Wall clock time and date at job start Tue Mar 31 2020 05:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34954 * 125.52821 * 2 1 4 4 C 1.41203 * 108.24183 * 180.02562 * 3 2 1 5 5 N 1.32940 * 126.37845 * 179.97438 * 4 3 2 6 6 C 1.33834 * 119.99489 * 0.02562 * 5 4 3 7 7 O 1.21838 * 120.00246 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99535 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47242 * 180.02562 * 10 9 8 12 12 C 1.38598 * 120.79911 * 269.72481 * 11 10 9 13 13 N 1.32332 * 119.10538 * 179.71511 * 12 11 10 14 14 C 1.31798 * 120.81712 * 0.56812 * 13 12 11 15 15 N 1.31797 * 121.75614 * 359.70041 * 14 13 12 16 16 C 1.32336 * 120.81334 * 0.02562 * 15 14 13 17 17 N 1.37416 * 107.24508 * 0.24135 * 4 3 2 18 18 H 0.97000 * 126.36568 * 179.75707 * 17 4 3 19 19 N 1.36453 * 125.52232 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.85126 * 0.02562 * 19 2 1 21 21 C 1.50704 * 109.46850 * 85.00475 * 20 19 2 22 22 H 1.07995 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99846 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00143 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00090 * 359.97438 * 23 21 20 26 26 H 1.48491 * 109.47433 * 90.00056 * 25 23 21 27 27 H 1.48503 * 109.47139 * 210.00508 * 25 23 21 28 28 H 1.48508 * 109.47161 * 329.99977 * 25 23 21 29 29 H 1.08998 * 109.47244 * 89.97055 * 1 2 3 30 30 H 1.08998 * 109.47310 * 209.97454 * 1 2 3 31 31 H 1.08997 * 109.46626 * 329.97393 * 1 2 3 32 32 H 1.08000 * 125.87855 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00676 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 35 35 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 36 36 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 37 37 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 38 38 H 1.08004 * 120.44694 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.12085 * 179.72780 * 14 13 12 40 40 H 1.08004 * 120.44559 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.47084 * 205.00187 * 20 19 2 42 42 H 1.09000 * 109.47591 * 325.00519 * 20 19 2 43 43 H 0.96998 * 120.00040 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2913 1.0983 0.0000 4 6 3.6396 0.6787 -0.0006 5 7 4.7105 1.4664 -0.0013 6 6 4.5627 2.7966 -0.0009 7 8 3.4467 3.2855 0.0005 8 7 5.6484 3.5951 -0.0021 9 6 5.4867 5.0512 -0.0011 10 6 6.8641 5.7173 -0.0035 11 6 6.6978 7.2151 -0.0018 12 6 6.6227 7.9220 -1.1916 13 7 6.4709 9.2360 -1.1510 14 6 6.4026 9.8726 0.0010 15 7 6.4758 9.2342 1.1517 16 6 6.6223 7.9195 1.1894 17 7 3.6386 -0.6954 -0.0065 18 1 4.4193 -1.2711 -0.0116 19 7 2.2999 -1.1106 -0.0005 20 6 1.8320 -2.4988 -0.0016 21 6 1.5549 -2.9343 -1.4175 22 1 1.7112 -2.2457 -2.2347 23 6 1.1017 -4.2119 -1.6697 24 7 0.8603 -4.5921 -2.9053 25 14 0.8320 -5.4032 -0.2563 26 1 -0.5613 -5.2742 0.2408 27 1 1.0625 -6.7920 -0.7287 28 1 1.7806 -5.0904 0.8427 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3632 0.8897 0.5142 32 1 1.9470 2.1219 0.0004 33 1 6.5369 3.2059 -0.0028 34 1 4.9346 5.3561 -0.8901 35 1 4.9372 5.3552 0.8899 36 1 7.4165 5.4125 0.8854 37 1 7.4132 5.4133 -0.8946 38 1 6.6829 7.4070 -2.1390 39 1 6.2829 10.9460 0.0021 40 1 6.6821 7.4024 2.1357 41 1 2.5984 -3.1409 0.4325 42 1 0.9180 -2.5748 0.5873 43 1 0.5411 -5.4907 -3.0826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529038371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:08 Heat of formation + Delta-G solvation = 94.414340 kcal Electronic energy + Delta-G solvation = -26150.337732 eV Core-core repulsion = 22232.612481 eV Total energy + Delta-G solvation = -3917.725251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38617 -41.98426 -40.31986 -36.99166 -35.88630 -34.74875 -34.67468 -34.15724 -33.68900 -32.58965 -29.99914 -28.83350 -28.60580 -25.69582 -25.56441 -24.40722 -23.25475 -22.56342 -21.27479 -20.95350 -19.26964 -18.85055 -18.59625 -18.53267 -17.71618 -17.22938 -16.70776 -16.41467 -16.08622 -15.92065 -15.59913 -15.43360 -14.90101 -14.75771 -14.65771 -14.57040 -14.45605 -14.29525 -14.21893 -13.86962 -13.73617 -13.27538 -13.10662 -13.00454 -12.58823 -12.41964 -12.21273 -11.88278 -11.84129 -11.83543 -11.23357 -11.13215 -10.90378 -10.38881 -10.31933 -10.20852 -9.93098 -9.90780 -8.41810 -8.33454 -6.54670 -0.11634 0.09788 0.24164 0.55890 1.39137 1.40493 1.49005 1.61567 2.26276 2.30416 2.78465 2.90070 3.00626 3.15109 3.27238 3.29562 3.66748 3.67650 3.83630 3.85287 4.06017 4.18730 4.27397 4.35290 4.43913 4.48430 4.54958 4.69279 4.78422 4.79068 4.83020 4.94084 5.05987 5.10657 5.12372 5.16576 5.29534 5.44085 5.72831 5.94207 5.97266 6.03791 6.12591 6.44467 6.55294 6.91276 7.02696 7.08556 7.11423 8.13620 8.74994 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034712 B = 0.001766 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.433232 B =15847.890888 C =15943.460195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.197 3.803 3 C -0.348 4.348 4 C 0.476 3.524 5 N -0.718 5.718 6 C 0.670 3.330 7 O -0.663 6.663 8 N -0.716 5.716 9 C 0.147 3.853 10 C -0.066 4.066 11 C -0.180 4.180 12 C 0.145 3.855 13 N -0.541 5.541 14 C 0.278 3.722 15 N -0.540 5.540 16 C 0.146 3.854 17 N -0.466 5.466 18 H 0.454 0.546 19 N -0.350 5.350 20 C 0.234 3.766 21 C -0.561 4.561 22 H 0.032 0.968 23 C 0.026 3.974 24 N -0.934 5.934 25 Si 0.946 3.054 26 H -0.254 1.254 27 H -0.288 1.288 28 H -0.234 1.234 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.172 0.828 33 H 0.410 0.590 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.186 0.814 39 H 0.217 0.783 40 H 0.189 0.811 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 15.797 10.084 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.381 4.381 4 C 0.223 3.777 5 N -0.483 5.483 6 C 0.368 3.632 7 O -0.547 6.547 8 N -0.371 5.371 9 C 0.023 3.977 10 C -0.105 4.105 11 C -0.184 4.184 12 C -0.021 4.021 13 N -0.255 5.255 14 C -0.009 4.009 15 N -0.254 5.254 16 C -0.019 4.019 17 N -0.190 5.190 18 H 0.303 0.697 19 N -0.137 5.137 20 C 0.116 3.884 21 C -0.599 4.599 22 H 0.050 0.950 23 C -0.175 4.175 24 N -0.572 5.572 25 Si 0.767 3.233 26 H -0.179 1.179 27 H -0.213 1.213 28 H -0.157 1.157 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.189 0.811 33 H 0.246 0.754 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.203 0.797 39 H 0.233 0.767 40 H 0.206 0.794 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.049 16.422 9.973 21.238 hybrid contribution 0.106 -1.690 -0.362 1.731 sum 9.155 14.733 9.611 19.830 Atomic orbital electron populations 1.20795 0.83713 1.05804 1.04879 1.21816 0.95952 0.84566 0.90426 1.22113 0.91523 1.00236 1.24205 1.18877 0.91489 0.82550 0.84822 1.68113 1.28661 1.04154 1.47373 1.16990 0.83685 0.85199 0.77288 1.90716 1.25881 1.79072 1.59063 1.44568 1.07957 1.05376 1.79202 1.21061 0.97360 0.78373 1.00925 1.20553 0.95722 0.87726 1.06501 1.21550 1.03005 0.98434 0.95443 1.23638 0.89295 0.89583 0.99562 1.68498 1.14408 1.10993 1.31577 1.25482 0.90571 1.02353 0.82504 1.68504 1.14396 1.10919 1.31556 1.23656 0.89198 0.89559 0.99506 1.44300 0.98759 1.04628 1.71328 0.69727 1.47316 0.93276 1.07387 1.65741 1.20211 0.97676 0.73167 0.97369 1.21341 1.47551 0.99083 0.91933 0.95014 1.25792 0.93505 0.99598 0.98627 1.70030 1.44888 1.20323 1.21952 0.85755 0.80735 0.77631 0.79132 1.17874 1.21338 1.15737 0.89189 0.88894 0.86755 0.81097 0.75413 0.93569 0.93176 0.87479 0.87759 0.79673 0.76678 0.79404 0.91555 0.89376 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 10.09 71.24 0.72 -1.70 16 2 C 0.20 6.73 6.92 41.09 0.28 7.02 16 3 C -0.35 -13.34 9.41 22.24 0.21 -13.13 16 4 C 0.48 18.46 8.07 133.95 1.08 19.54 16 5 N -0.72 -27.67 10.59 -322.55 -3.42 -31.09 16 6 C 0.67 25.42 8.47 179.35 1.52 26.94 16 7 O -0.66 -28.92 13.26 -4.79 -0.06 -28.99 16 8 N -0.72 -19.21 5.56 -479.05 -2.66 -21.87 16 9 C 0.15 3.14 5.66 86.38 0.49 3.62 16 10 C -0.07 -0.77 5.51 29.85 0.16 -0.61 16 11 C -0.18 -2.53 5.17 -19.69 -0.10 -2.63 16 12 C 0.14 2.27 11.01 84.70 0.93 3.21 16 13 N -0.54 -10.21 10.44 -200.04 -2.09 -12.30 16 14 C 0.28 4.76 12.29 180.88 2.22 6.98 16 15 N -0.54 -9.96 10.44 -200.04 -2.09 -12.05 16 16 C 0.15 2.21 11.01 84.70 0.93 3.15 16 17 N -0.47 -16.22 7.38 -54.79 -0.40 -16.63 16 18 H 0.45 13.49 8.96 -213.28 -1.91 11.58 16 19 N -0.35 -12.51 3.63 -337.52 -1.23 -13.73 16 20 C 0.23 8.50 5.00 85.63 0.43 8.93 16 21 C -0.56 -26.97 9.94 25.60 0.25 -26.72 16 22 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 23 C 0.03 1.26 5.47 84.66 0.46 1.72 16 24 N -0.93 -51.80 13.96 21.45 0.30 -51.50 16 25 Si 0.95 34.94 27.47 68.60 1.88 36.83 16 26 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 27 H -0.29 -11.05 7.11 99.48 0.71 -10.35 16 28 H -0.23 -7.46 6.54 99.48 0.65 -6.81 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.09 2.11 7.14 -2.39 -0.02 2.10 16 31 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.17 7.02 5.77 -2.91 -0.02 7.01 16 33 H 0.41 8.85 8.57 -92.71 -0.79 8.05 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.11 0.87 8.10 -2.39 -0.02 0.85 16 37 H 0.10 0.92 8.10 -2.39 -0.02 0.90 16 38 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 41 H 0.07 2.22 7.20 -2.39 -0.02 2.20 16 42 H 0.09 2.76 6.61 -2.39 -0.02 2.75 16 43 H 0.27 14.10 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -74.69 371.06 -1.86 -76.55 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.69 Total: 38.46 kcal Atomic # 6 Polarization: 26.72 SS G_CDS: 9.60 Total: 36.32 kcal Atomic # 7 Polarization: -147.58 SS G_CDS: -11.59 Total: -159.17 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.06 Total: -28.99 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 1.88 Total: 36.83 kcal Total: -74.69 -1.86 -76.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529038371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.963 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds