Wall clock time and date at job start Tue Mar 31 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38042 * 119.99571 * 2 1 4 4 C 1.38885 * 119.99068 * 180.02562 * 3 2 1 5 5 N 1.39979 * 120.00197 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99657 * 146.06969 * 5 4 3 7 7 O 1.21291 * 120.00154 * 354.96081 * 6 5 4 8 8 C 1.50705 * 119.99725 * 174.95437 * 6 5 4 9 9 H 1.08997 * 109.47050 * 320.00283 * 8 6 5 10 10 N 1.46901 * 109.46697 * 200.00423 * 8 6 5 11 11 C 1.53000 * 109.46865 * 80.00505 * 8 6 5 12 12 C 1.52999 * 109.47013 * 184.99705 * 11 8 6 13 13 C 1.50694 * 109.47304 * 179.97438 * 12 11 8 14 14 H 1.08003 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00098 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00236 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47087 * 89.99869 * 17 15 13 19 19 H 1.48494 * 109.47089 * 209.99976 * 17 15 13 20 20 H 1.48500 * 109.47491 * 330.00518 * 17 15 13 21 21 C 1.38909 * 119.98912 * 359.97438 * 4 3 2 22 22 C 1.38000 * 119.99823 * 359.97438 * 21 4 3 23 23 C 1.38824 * 119.99630 * 179.72639 * 2 1 3 24 24 N 1.40319 * 119.99703 * 359.97438 * 23 2 1 25 25 C 1.35046 * 127.38860 * 187.19469 * 24 23 2 26 26 N 1.30752 * 107.27641 * 180.02562 * 25 24 23 27 27 N 1.28426 * 110.64120 * 359.97438 * 26 25 24 28 28 N 1.28948 * 110.19831 * 359.71116 * 27 26 25 29 29 H 1.09001 * 109.47171 * 96.51796 * 1 2 3 30 30 H 1.09000 * 109.47450 * 336.51728 * 1 2 3 31 31 H 1.09002 * 109.47063 * 216.51887 * 1 2 3 32 32 H 1.08000 * 120.00711 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99907 * 326.07743 * 5 4 3 34 34 H 1.00898 * 110.99604 * 176.05015 * 10 8 6 35 35 H 1.00903 * 111.00081 * 299.99761 * 10 8 6 36 36 H 1.08999 * 109.47174 * 304.99416 * 11 8 6 37 37 H 1.09004 * 109.47304 * 64.99710 * 11 8 6 38 38 H 1.08994 * 109.47308 * 300.00487 * 12 11 8 39 39 H 1.09004 * 109.47082 * 59.99869 * 12 11 8 40 40 H 0.96998 * 120.00245 * 180.02562 * 16 15 13 41 41 H 1.08003 * 120.00288 * 179.97438 * 21 4 3 42 42 H 1.08000 * 120.00096 * 179.97438 * 22 21 4 43 43 H 1.07998 * 126.36256 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1955 0.0000 4 6 3.5859 1.1954 -0.0005 5 7 4.2860 2.4076 -0.0011 6 6 5.4619 2.5069 0.6500 7 8 5.8692 1.5756 1.3118 8 6 6.2706 3.7750 0.5556 9 1 6.2299 4.1568 -0.4646 10 7 7.6662 3.4937 0.9179 11 6 5.6953 4.8193 1.5143 12 6 6.4365 6.1449 1.3291 13 6 5.8695 7.1737 2.2730 14 1 5.0615 6.9086 2.9388 15 6 6.3822 8.4536 2.2866 16 7 7.3657 8.7767 1.4756 17 14 5.6787 9.7290 3.4562 18 1 6.4209 9.6846 4.7417 19 1 5.8122 11.0798 2.8539 20 1 4.2438 9.4366 3.7028 21 6 4.2801 -0.0078 -0.0005 22 6 3.5898 -1.2027 0.0005 23 6 2.2010 -1.2023 0.0057 24 7 1.4993 -2.4174 0.0121 25 6 2.0111 -3.6592 0.1525 26 7 1.0108 -4.4996 0.1002 27 7 -0.0985 -3.8735 -0.0631 28 7 0.1117 -2.6026 -0.1200 29 1 -0.3633 -0.1167 -1.0210 30 1 -0.3634 0.9425 0.4095 31 1 -0.3633 -0.8259 0.6116 32 1 1.6571 2.1309 0.0004 33 1 3.9247 3.1761 -0.4699 34 1 8.2424 4.3136 0.8006 35 1 7.7306 3.1383 1.8600 36 1 4.6358 4.9628 1.3021 37 1 5.8168 4.4756 2.5416 38 1 7.4960 6.0015 1.5412 39 1 6.3150 6.4887 0.3019 40 1 7.7266 9.6769 1.4855 41 1 5.3602 -0.0081 -0.0014 42 1 4.1294 -2.1381 0.0001 43 1 3.0530 -3.9113 0.2836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573793638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:17 Heat of formation + Delta-G solvation = 110.667156 kcal Electronic energy + Delta-G solvation = -26756.529129 eV Core-core repulsion = 22839.508653 eV Total energy + Delta-G solvation = -3917.020476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.54026 -40.94604 -39.39500 -36.31581 -35.56158 -34.19788 -33.40195 -32.96821 -32.31107 -30.07941 -29.83545 -27.64105 -26.84024 -25.08522 -24.13618 -23.75307 -22.27356 -22.09081 -20.69437 -19.96284 -18.86045 -17.94594 -17.41765 -17.01176 -16.63831 -16.37533 -15.72310 -15.18013 -14.81248 -14.74997 -14.57052 -14.35229 -14.26627 -13.94798 -13.76778 -13.53514 -13.29704 -13.18400 -12.84668 -12.64356 -12.32615 -12.30286 -12.06994 -11.88153 -11.59728 -11.24183 -11.17979 -11.03597 -10.79638 -10.78204 -10.39207 -10.14466 -10.10208 -9.52502 -9.35985 -9.30006 -8.54390 -8.43841 -8.33513 -6.18343 -4.22056 -0.03534 0.80844 1.18260 1.40985 1.91492 2.48549 2.75590 3.20513 3.24223 3.27851 3.30187 3.66846 3.87310 4.20423 4.30712 4.34894 4.46032 4.62325 4.75414 4.89881 4.95031 4.95513 5.07810 5.16019 5.18003 5.33831 5.35821 5.38898 5.43026 5.52165 5.81190 5.84154 5.91105 5.97060 6.07886 6.12725 6.32224 6.52776 6.70130 7.06586 7.32943 7.38697 7.48249 7.69825 7.78002 7.98471 8.04895 8.19439 8.83692 9.43605 10.92387 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.002069 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.094136 B =13531.790271 C =14374.085236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.039 4.039 3 C -0.134 4.134 4 C 0.181 3.819 5 N -0.678 5.678 6 C 0.527 3.473 7 O -0.513 6.513 8 C 0.077 3.923 9 H 0.103 0.897 10 N -0.830 5.830 11 C -0.139 4.139 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.108 4.108 22 C -0.090 4.090 23 C 0.090 3.910 24 N -0.312 5.312 25 C 0.220 3.780 26 N -0.331 5.331 27 N -0.045 5.045 28 N -0.078 5.078 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.417 0.583 34 H 0.358 0.642 35 H 0.347 0.653 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 -18.446 -6.037 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.042 4.042 3 C -0.155 4.155 4 C 0.085 3.915 5 N -0.323 5.323 6 C 0.316 3.684 7 O -0.386 6.386 8 C -0.039 4.039 9 H 0.121 0.879 10 N -0.363 5.363 11 C -0.179 4.179 12 C -0.013 4.013 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.129 4.129 22 C -0.112 4.112 23 C -0.003 4.003 24 N -0.101 5.101 25 C -0.077 4.077 26 N -0.181 5.181 27 N -0.040 5.040 28 N -0.063 5.063 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.254 0.746 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.170 0.830 42 H 0.156 0.844 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.122 -19.863 -6.330 22.756 hybrid contribution 0.340 2.420 1.235 2.738 sum -8.782 -17.443 -5.096 20.183 Atomic orbital electron populations 1.21098 0.89118 1.03789 1.03713 1.19480 0.97127 0.90090 0.97478 1.20791 0.92020 0.98124 1.04600 1.17926 0.90758 0.86487 0.96367 1.43791 1.22513 1.12218 1.53817 1.21258 0.79876 0.90163 0.77098 1.90664 1.68927 1.40251 1.38713 1.21500 0.89789 0.90392 1.02182 0.87948 1.58760 1.06446 1.38211 1.32889 1.22431 1.00736 0.97032 0.97721 1.19102 0.95317 0.89283 0.97554 1.21147 1.18795 0.95413 1.21106 0.92698 1.25011 0.94965 0.98575 0.95727 1.69936 1.25565 1.20095 1.37449 0.86575 0.79494 0.80810 0.81031 1.20573 1.21102 1.19876 1.21042 1.01641 0.89607 1.00590 1.20695 0.90179 0.99598 1.00721 1.17419 0.90383 0.81663 1.10821 1.49028 1.06722 1.06857 1.47521 1.27420 1.02687 0.80279 0.97327 1.74482 0.94527 1.27855 1.21189 1.78082 1.18046 0.97886 1.09990 1.82719 0.89853 1.12028 1.21717 0.90156 0.91018 0.89394 0.83941 0.74568 0.82584 0.83985 0.92424 0.92440 0.96318 0.96222 0.92788 0.83043 0.84440 0.74610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.76 36.00 0.32 -0.66 16 2 C -0.04 -0.35 5.89 -104.48 -0.62 -0.96 16 3 C -0.13 -1.16 9.58 -39.41 -0.38 -1.54 16 4 C 0.18 1.82 6.27 -83.65 -0.52 1.29 16 5 N -0.68 -6.99 5.34 -9.84 -0.05 -7.04 16 6 C 0.53 7.10 6.81 -10.98 -0.07 7.03 16 7 O -0.51 -8.14 13.97 5.55 0.08 -8.06 16 8 C 0.08 1.09 3.21 -68.86 -0.22 0.87 16 9 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 10 N -0.83 -12.28 8.94 -5.65 -0.05 -12.33 16 11 C -0.14 -2.41 4.78 -26.73 -0.13 -2.54 16 12 C 0.02 0.55 4.74 -27.89 -0.13 0.42 16 13 C -0.53 -13.69 9.11 -34.44 -0.31 -14.00 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.11 -1.07 8.65 -39.42 -0.34 -1.41 16 22 C -0.09 -0.71 9.48 -39.43 -0.37 -1.09 16 23 C 0.09 0.81 6.68 -83.52 -0.56 0.25 16 24 N -0.31 -2.94 3.82 -11.71 -0.04 -2.99 16 25 C 0.22 1.70 12.14 -90.16 -1.09 0.61 16 26 N -0.33 -3.61 12.15 29.64 0.36 -3.25 16 27 N -0.05 -0.56 13.39 60.35 0.81 0.25 16 28 N -0.08 -0.89 10.18 60.35 0.61 -0.27 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 31 H 0.09 0.83 5.77 -51.93 -0.30 0.53 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.42 3.30 8.82 -40.82 -0.36 2.94 16 34 H 0.36 5.41 7.55 -39.29 -0.30 5.12 16 35 H 0.35 5.22 8.58 -39.29 -0.34 4.88 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.15 1.66 6.45 -52.48 -0.34 1.33 16 42 H 0.14 0.64 6.93 -52.49 -0.36 0.28 16 43 H 0.24 0.61 7.24 -52.49 -0.38 0.23 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -32.28 364.56 -6.84 -39.12 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.23 Total: 8.06 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -4.54 Total: -10.24 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 2.37 Total: -49.87 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.28 -6.84 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573793638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.791 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds