Wall clock time and date at job start Tue Mar 31 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38046 * 119.99856 * 2 1 4 4 C 1.38875 * 119.99675 * 179.97438 * 3 2 1 5 5 N 1.39973 * 120.00432 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00163 * 215.55662 * 5 4 3 7 7 O 1.21287 * 119.99694 * 355.41899 * 6 5 4 8 8 C 1.50694 * 120.00105 * 175.42214 * 6 5 4 9 9 H 1.09007 * 109.47459 * 40.00454 * 8 6 5 10 10 N 1.46902 * 109.47079 * 160.00034 * 8 6 5 11 11 C 1.52994 * 109.47251 * 279.99958 * 8 6 5 12 12 C 1.53008 * 109.47239 * 175.00269 * 11 8 6 13 13 C 1.50698 * 109.46939 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00079 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99824 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99970 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00210 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46853 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47294 * 119.99585 * 17 15 13 20 20 H 1.48496 * 109.46902 * 239.99820 * 17 15 13 21 21 C 1.38916 * 119.98452 * 0.02562 * 4 3 2 22 22 C 1.37991 * 119.99714 * 359.97438 * 21 4 3 23 23 C 1.38818 * 120.00009 * 180.02562 * 2 1 3 24 24 N 1.40331 * 119.99110 * 0.02562 * 23 2 1 25 25 C 1.35048 * 127.38391 * 173.54976 * 24 23 2 26 26 N 1.30749 * 107.27377 * 179.97438 * 25 24 23 27 27 N 1.28424 * 110.64279 * 0.02562 * 26 25 24 28 28 N 1.28949 * 110.19876 * 359.72350 * 27 26 25 29 29 H 1.08991 * 109.47484 * 263.26974 * 1 2 3 30 30 H 1.09001 * 109.46842 * 23.27202 * 1 2 3 31 31 H 1.08996 * 109.47018 * 143.26540 * 1 2 3 32 32 H 1.08005 * 119.99924 * 359.97438 * 3 2 1 33 33 H 0.97003 * 120.00117 * 35.56700 * 5 4 3 34 34 H 1.00904 * 111.00440 * 296.04711 * 10 8 6 35 35 H 1.00905 * 110.99983 * 59.99985 * 10 8 6 36 36 H 1.09001 * 109.47429 * 294.99878 * 11 8 6 37 37 H 1.08997 * 109.47196 * 55.00029 * 11 8 6 38 38 H 1.09001 * 109.46591 * 300.00122 * 12 11 8 39 39 H 1.08997 * 109.47223 * 59.99776 * 12 11 8 40 40 H 0.97000 * 119.99969 * 180.02562 * 16 15 13 41 41 H 1.07997 * 119.99918 * 180.24753 * 21 4 3 42 42 H 1.07999 * 120.00018 * 180.02562 * 22 21 4 43 43 H 1.07996 * 126.36280 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1955 0.0000 4 6 3.5859 1.1955 0.0005 5 7 4.2859 2.4076 0.0011 6 6 5.4455 2.5165 -0.6772 7 8 5.9249 1.5429 -1.2188 8 6 6.1464 3.8478 -0.7625 9 1 6.0804 4.3556 0.1998 10 7 7.5583 3.6366 -1.1088 11 6 5.4802 4.7067 -1.8392 12 6 6.1097 6.1013 -1.8409 13 6 5.4531 6.9475 -2.9010 14 1 4.6659 6.5321 -3.5127 15 6 5.8580 8.2518 -3.0907 16 7 6.8169 8.7575 -2.3461 17 14 5.0436 9.3010 -4.4043 18 1 4.0010 8.5035 -5.0988 19 1 4.4182 10.4898 -3.7711 20 1 6.0646 9.7435 -5.3876 21 6 4.2802 -0.0078 0.0005 22 6 3.5898 -1.2026 0.0005 23 6 2.2011 -1.2022 -0.0005 24 7 1.4992 -2.4174 -0.0016 25 6 2.0126 -3.6606 -0.1228 26 7 1.0117 -4.5005 -0.0727 27 7 -0.0993 -3.8727 0.0714 28 7 0.1115 -2.6018 0.1287 29 1 -0.3634 -0.1204 1.0205 30 1 -0.3633 0.9441 -0.4060 31 1 -0.3633 -0.8236 -0.6146 32 1 1.6571 2.1309 -0.0004 33 1 3.9366 3.1693 0.4897 34 1 8.0366 3.1264 -0.3814 35 1 7.6463 3.1670 -1.9976 36 1 5.6237 4.2423 -2.8149 37 1 4.4138 4.7896 -1.6296 38 1 5.9662 6.5658 -0.8652 39 1 7.1761 6.0184 -2.0505 40 1 7.1015 9.6752 -2.4794 41 1 5.3601 -0.0081 0.0050 42 1 4.1294 -2.1381 0.0010 43 1 3.0559 -3.9141 -0.2387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573793639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:20 Heat of formation + Delta-G solvation = 112.354598 kcal Electronic energy + Delta-G solvation = -26797.235159 eV Core-core repulsion = 22880.287856 eV Total energy + Delta-G solvation = -3916.947303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.57367 -41.03695 -39.49456 -36.31400 -35.39101 -34.25904 -33.43496 -32.91625 -32.34338 -30.29024 -29.84662 -27.67332 -26.72881 -25.11493 -24.05913 -23.72919 -22.29874 -22.04945 -20.61889 -20.02516 -18.91394 -17.96064 -17.30552 -17.04044 -16.64404 -16.33480 -15.73673 -15.71785 -15.07122 -14.67858 -14.64252 -14.40475 -14.28377 -13.97325 -13.73822 -13.70351 -13.44468 -12.89850 -12.67726 -12.48043 -12.35596 -12.20566 -12.07261 -11.73307 -11.63381 -11.21474 -10.98710 -10.85528 -10.82078 -10.65397 -10.46551 -10.27743 -9.94183 -9.51896 -9.35611 -9.09831 -8.58321 -8.42131 -8.34155 -6.02697 -4.05276 -0.07727 0.76556 1.14337 1.37380 1.88406 2.33708 2.75227 3.18381 3.27975 3.36150 3.39360 3.63182 3.83386 4.16455 4.31807 4.40411 4.44034 4.55923 4.68306 4.79828 4.87527 4.92197 5.04013 5.11890 5.28207 5.31953 5.33723 5.36138 5.39811 5.58800 5.77733 5.79686 5.87651 5.93302 6.07717 6.24679 6.45380 6.49194 6.90738 7.01604 7.26738 7.58152 7.65400 7.83049 7.86668 8.01791 8.01835 8.37820 9.02616 9.58624 11.08075 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002137 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.921041 B =13096.858696 C =14008.413236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 C -0.131 4.131 4 C 0.173 3.827 5 N -0.674 5.674 6 C 0.485 3.515 7 O -0.530 6.530 8 C 0.082 3.918 9 H 0.104 0.896 10 N -0.805 5.805 11 C -0.097 4.097 12 C 0.031 3.969 13 C -0.524 4.524 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.108 4.108 22 C -0.093 4.093 23 C 0.093 3.907 24 N -0.313 5.313 25 C 0.220 3.780 26 N -0.330 5.330 27 N -0.045 5.045 28 N -0.078 5.078 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.418 0.582 34 H 0.336 0.664 35 H 0.350 0.650 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.014 0.986 39 H 0.036 0.964 40 H 0.260 0.740 41 H 0.153 0.847 42 H 0.137 0.863 43 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -19.943 9.024 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.043 4.043 3 C -0.152 4.152 4 C 0.077 3.923 5 N -0.319 5.319 6 C 0.273 3.727 7 O -0.405 6.405 8 C -0.034 4.034 9 H 0.121 0.879 10 N -0.332 5.332 11 C -0.135 4.135 12 C -0.006 4.006 13 C -0.562 4.562 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.129 4.129 22 C -0.115 4.115 23 C 0.000 4.000 24 N -0.102 5.102 25 C -0.077 4.077 26 N -0.180 5.180 27 N -0.039 5.039 28 N -0.062 5.062 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.255 0.745 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.171 0.829 42 H 0.155 0.845 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.739 -20.027 8.738 23.180 hybrid contribution 0.143 0.414 -0.533 0.690 sum -7.596 -19.613 8.204 22.576 Atomic orbital electron populations 1.21096 0.89055 1.03843 1.03720 1.19500 0.97189 0.90085 0.97511 1.20834 0.92091 0.98163 1.04144 1.18009 0.90839 0.86648 0.96810 1.43948 1.23951 1.12498 1.51527 1.23251 0.79931 0.93704 0.75827 1.90652 1.64823 1.39810 1.45257 1.21925 0.88775 0.89619 1.03129 0.87866 1.58972 1.09171 1.57041 1.08063 1.21706 0.98260 0.98486 0.95052 1.19024 0.97282 0.87484 0.96794 1.21283 1.19642 0.96812 1.18488 0.92920 1.24995 0.95117 0.98031 0.96188 1.69976 1.28629 1.14968 1.39476 0.86590 0.79401 0.80420 0.81885 1.19855 1.21050 1.21009 1.21123 1.01684 0.89591 1.00481 1.20714 0.90210 0.99633 1.00905 1.17435 0.90385 0.81696 1.10517 1.49039 1.06726 1.06793 1.47668 1.27415 1.02695 0.80234 0.97370 1.74483 0.94436 1.27833 1.21245 1.78087 1.18008 0.97858 1.09984 1.82729 0.89827 1.12078 1.21596 0.90147 0.90948 0.89395 0.83863 0.74479 0.85220 0.83570 0.92645 0.92658 0.96784 0.94582 0.93075 0.82935 0.84492 0.74632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.74 36.01 0.31 -0.66 16 2 C -0.04 -0.35 5.89 -104.48 -0.62 -0.97 16 3 C -0.13 -1.12 9.59 -39.42 -0.38 -1.50 16 4 C 0.17 1.68 6.29 -83.65 -0.53 1.15 16 5 N -0.67 -6.58 5.33 -9.84 -0.05 -6.63 16 6 C 0.49 6.08 6.91 -10.99 -0.08 6.01 16 7 O -0.53 -7.73 13.72 5.55 0.08 -7.65 16 8 C 0.08 1.14 3.15 -68.87 -0.22 0.92 16 9 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 10 N -0.80 -11.54 8.44 -5.66 -0.05 -11.59 16 11 C -0.10 -1.74 4.78 -26.73 -0.13 -1.86 16 12 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 13 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 14 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 17 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.11 -1.02 8.68 -39.42 -0.34 -1.36 16 22 C -0.09 -0.71 9.48 -39.44 -0.37 -1.08 16 23 C 0.09 0.82 6.68 -83.52 -0.56 0.26 16 24 N -0.31 -2.91 3.83 -11.72 -0.04 -2.96 16 25 C 0.22 1.67 12.15 -90.16 -1.10 0.58 16 26 N -0.33 -3.57 12.15 29.64 0.36 -3.21 16 27 N -0.04 -0.55 13.39 60.35 0.81 0.26 16 28 N -0.08 -0.87 10.18 60.35 0.61 -0.26 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 31 H 0.09 0.83 5.80 -51.93 -0.30 0.53 16 32 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.42 3.09 8.82 -40.82 -0.36 2.73 16 34 H 0.34 4.01 9.06 -39.29 -0.36 3.65 16 35 H 0.35 5.12 8.58 -39.29 -0.34 4.78 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.04 0.94 7.75 -51.93 -0.40 0.53 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 41 H 0.15 1.57 6.27 -52.49 -0.33 1.24 16 42 H 0.14 0.60 6.91 -52.49 -0.36 0.24 16 43 H 0.24 0.57 7.23 -52.49 -0.38 0.19 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -33.70 366.24 -6.92 -40.62 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.32 Total: 5.90 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -4.54 Total: -10.83 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 2.37 Total: -49.60 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.08 Total: -7.65 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.70 -6.92 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573793639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.971 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds