Wall clock time and date at job start Tue Mar 31 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38046 * 119.99856 * 2 1 4 4 C 1.38875 * 119.99675 * 179.97438 * 3 2 1 5 5 N 1.39973 * 120.00432 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00163 * 215.55662 * 5 4 3 7 7 O 1.21287 * 119.99694 * 355.41899 * 6 5 4 8 8 C 1.50694 * 120.00105 * 175.42214 * 6 5 4 9 9 H 1.09007 * 109.47459 * 40.00454 * 8 6 5 10 10 N 1.46902 * 109.47079 * 160.00034 * 8 6 5 11 11 C 1.52994 * 109.47251 * 279.99958 * 8 6 5 12 12 C 1.53008 * 109.47239 * 175.00269 * 11 8 6 13 13 C 1.50698 * 109.46939 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00079 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99824 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99970 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00210 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46853 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47294 * 119.99585 * 17 15 13 20 20 H 1.48496 * 109.46902 * 239.99820 * 17 15 13 21 21 C 1.38916 * 119.98452 * 0.02562 * 4 3 2 22 22 C 1.37991 * 119.99714 * 359.97438 * 21 4 3 23 23 C 1.38818 * 120.00009 * 180.02562 * 2 1 3 24 24 N 1.40331 * 119.99110 * 0.02562 * 23 2 1 25 25 C 1.35048 * 127.38391 * 173.54976 * 24 23 2 26 26 N 1.30749 * 107.27377 * 179.97438 * 25 24 23 27 27 N 1.28424 * 110.64279 * 0.02562 * 26 25 24 28 28 N 1.28949 * 110.19876 * 359.72350 * 27 26 25 29 29 H 1.08991 * 109.47484 * 263.26974 * 1 2 3 30 30 H 1.09001 * 109.46842 * 23.27202 * 1 2 3 31 31 H 1.08996 * 109.47018 * 143.26540 * 1 2 3 32 32 H 1.08005 * 119.99924 * 359.97438 * 3 2 1 33 33 H 0.97003 * 120.00117 * 35.56700 * 5 4 3 34 34 H 1.00904 * 111.00440 * 296.04711 * 10 8 6 35 35 H 1.00905 * 110.99983 * 59.99985 * 10 8 6 36 36 H 1.09001 * 109.47429 * 294.99878 * 11 8 6 37 37 H 1.08997 * 109.47196 * 55.00029 * 11 8 6 38 38 H 1.09001 * 109.46591 * 300.00122 * 12 11 8 39 39 H 1.08997 * 109.47223 * 59.99776 * 12 11 8 40 40 H 0.97000 * 119.99969 * 180.02562 * 16 15 13 41 41 H 1.07997 * 119.99918 * 180.24753 * 21 4 3 42 42 H 1.07999 * 120.00018 * 180.02562 * 22 21 4 43 43 H 1.07996 * 126.36280 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1955 0.0000 4 6 3.5859 1.1955 0.0005 5 7 4.2859 2.4076 0.0011 6 6 5.4455 2.5165 -0.6772 7 8 5.9249 1.5429 -1.2188 8 6 6.1464 3.8478 -0.7625 9 1 6.0804 4.3556 0.1998 10 7 7.5583 3.6366 -1.1088 11 6 5.4802 4.7067 -1.8392 12 6 6.1097 6.1013 -1.8409 13 6 5.4531 6.9475 -2.9010 14 1 4.6659 6.5321 -3.5127 15 6 5.8580 8.2518 -3.0907 16 7 6.8169 8.7575 -2.3461 17 14 5.0436 9.3010 -4.4043 18 1 4.0010 8.5035 -5.0988 19 1 4.4182 10.4898 -3.7711 20 1 6.0646 9.7435 -5.3876 21 6 4.2802 -0.0078 0.0005 22 6 3.5898 -1.2026 0.0005 23 6 2.2011 -1.2022 -0.0005 24 7 1.4992 -2.4174 -0.0016 25 6 2.0126 -3.6606 -0.1228 26 7 1.0117 -4.5005 -0.0727 27 7 -0.0993 -3.8727 0.0714 28 7 0.1115 -2.6018 0.1287 29 1 -0.3634 -0.1204 1.0205 30 1 -0.3633 0.9441 -0.4060 31 1 -0.3633 -0.8236 -0.6146 32 1 1.6571 2.1309 -0.0004 33 1 3.9366 3.1693 0.4897 34 1 8.0366 3.1264 -0.3814 35 1 7.6463 3.1670 -1.9976 36 1 5.6237 4.2423 -2.8149 37 1 4.4138 4.7896 -1.6296 38 1 5.9662 6.5658 -0.8652 39 1 7.1761 6.0184 -2.0505 40 1 7.1015 9.6752 -2.4794 41 1 5.3601 -0.0081 0.0050 42 1 4.1294 -2.1381 0.0010 43 1 3.0559 -3.9141 -0.2387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573793639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:19 Heat of formation + Delta-G solvation = 89.120978 kcal Electronic energy + Delta-G solvation = -26798.242644 eV Core-core repulsion = 22880.287856 eV Total energy + Delta-G solvation = -3917.954788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.29948 -41.88210 -40.31422 -37.23871 -36.63642 -35.04034 -34.81732 -34.09711 -33.05829 -31.92850 -30.63517 -28.34084 -28.16793 -26.18016 -25.17480 -24.56296 -23.15989 -22.96329 -21.96411 -21.05713 -19.59244 -18.95134 -18.31104 -18.08577 -17.76844 -17.27308 -16.97912 -16.53343 -16.46826 -15.96301 -15.53073 -15.30996 -15.13785 -14.94615 -14.65139 -14.47235 -14.29515 -14.09735 -13.84490 -13.57212 -13.43106 -13.38964 -13.09405 -12.84300 -12.80369 -12.51284 -12.31162 -12.24610 -11.93753 -11.75803 -11.62562 -11.56107 -11.26869 -11.14258 -10.97988 -10.48610 -10.00269 -9.66046 -9.16514 -8.13627 -6.22957 -0.75731 0.12454 0.41581 0.71672 1.15975 1.37997 1.41556 1.43639 1.54648 1.91643 2.44625 2.50725 3.02458 3.20061 3.30516 3.49092 3.57909 3.68353 3.72486 3.86161 4.03986 4.09723 4.17110 4.25315 4.31049 4.37719 4.49866 4.69132 4.72421 4.77270 4.78911 4.93906 5.11294 5.12133 5.23143 5.26870 5.28753 5.38439 5.59141 5.77449 5.86831 6.00668 6.07784 6.29271 6.31461 6.54117 6.94101 6.96748 7.27548 7.45274 8.97442 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002137 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.921041 B =13096.858696 C =14008.413236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 C -0.127 4.127 4 C 0.157 3.843 5 N -0.661 5.661 6 C 0.494 3.506 7 O -0.550 6.550 8 C 0.089 3.911 9 H 0.118 0.882 10 N -0.819 5.819 11 C -0.084 4.084 12 C 0.038 3.962 13 C -0.540 4.540 14 H 0.055 0.945 15 C 0.002 3.998 16 N -0.928 5.928 17 Si 0.956 3.044 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.283 1.283 21 C -0.119 4.119 22 C -0.081 4.081 23 C 0.086 3.914 24 N -0.316 5.316 25 C 0.235 3.765 26 N -0.356 5.356 27 N -0.070 5.070 28 N -0.092 5.092 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.429 0.571 34 H 0.349 0.651 35 H 0.347 0.653 36 H 0.043 0.957 37 H 0.070 0.930 38 H -0.003 1.003 39 H 0.007 0.993 40 H 0.261 0.739 41 H 0.145 0.855 42 H 0.172 0.828 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -20.672 9.022 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.148 4.148 4 C 0.061 3.939 5 N -0.307 5.307 6 C 0.281 3.719 7 O -0.427 6.427 8 C -0.027 4.027 9 H 0.136 0.864 10 N -0.348 5.348 11 C -0.122 4.122 12 C 0.001 3.999 13 C -0.579 4.579 14 H 0.073 0.927 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.209 1.209 21 C -0.139 4.139 22 C -0.102 4.102 23 C -0.007 4.007 24 N -0.106 5.106 25 C -0.061 4.061 26 N -0.206 5.206 27 N -0.065 5.065 28 N -0.078 5.078 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.178 0.822 33 H 0.269 0.731 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.015 0.985 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.163 0.837 42 H 0.190 0.810 43 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -8.241 -20.767 8.762 23.999 hybrid contribution 0.312 0.604 -0.503 0.846 sum -7.929 -20.162 8.260 23.186 Atomic orbital electron populations 1.21057 0.88776 1.03960 1.03576 1.19681 0.97562 0.90431 0.97624 1.20947 0.91646 0.98785 1.03401 1.18159 0.91312 0.86499 0.97916 1.43715 1.22932 1.13238 1.50798 1.22675 0.80522 0.92596 0.76085 1.90651 1.65557 1.40146 1.46366 1.21666 0.88563 0.90193 1.02228 0.86420 1.58946 1.09712 1.57623 1.08547 1.21417 0.99030 0.95728 0.96058 1.18841 0.95723 0.90450 0.94911 1.21764 1.19609 0.97464 1.19031 0.92663 1.25866 0.95756 0.99593 0.98411 1.70097 1.30134 1.15413 1.41243 0.85540 0.78509 0.78707 0.79108 1.18865 1.20423 1.20884 1.21164 1.01456 0.90230 1.01100 1.20982 0.89667 1.00525 0.99058 1.17625 0.90905 0.81533 1.10641 1.49080 1.06244 1.07486 1.47749 1.28354 1.03962 0.79006 0.94744 1.74417 0.94873 1.28925 1.22412 1.78075 1.19073 0.98363 1.10982 1.82701 0.91183 1.11781 1.22086 0.90059 0.89651 0.90780 0.82226 0.73122 0.83673 0.83897 0.93834 0.91122 0.98493 0.97504 0.92997 0.83709 0.81020 0.69784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.74 71.24 0.62 -1.13 16 2 C -0.05 -0.80 5.89 -19.77 -0.12 -0.92 16 3 C -0.13 -1.90 9.59 22.38 0.21 -1.68 16 4 C 0.16 2.72 6.29 38.16 0.24 2.96 16 5 N -0.66 -11.59 5.33 -303.43 -1.62 -13.21 16 6 C 0.49 11.63 6.91 87.65 0.61 12.23 16 7 O -0.55 -15.30 13.72 -3.05 -0.04 -15.34 16 8 C 0.09 2.41 3.15 44.16 0.14 2.55 16 9 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 10 N -0.82 -23.20 8.44 -171.81 -1.45 -24.65 16 11 C -0.08 -2.97 4.78 30.59 0.15 -2.82 16 12 C 0.04 1.83 4.86 29.85 0.15 1.97 16 13 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 14 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 15 C 0.00 0.09 5.46 84.66 0.46 0.55 16 16 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 17 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 C -0.12 -1.98 8.68 22.37 0.19 -1.79 16 22 C -0.08 -1.00 9.48 22.36 0.21 -0.79 16 23 C 0.09 1.32 6.68 38.07 0.25 1.58 16 24 N -0.32 -5.28 3.83 -190.98 -0.73 -6.01 16 25 C 0.23 2.97 12.15 180.19 2.19 5.16 16 26 N -0.36 -7.25 12.15 -60.14 -0.73 -7.98 16 27 N -0.07 -1.71 13.39 37.02 0.50 -1.21 16 28 N -0.09 -2.02 10.18 37.02 0.38 -1.64 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.02 8.04 -2.39 -0.02 1.00 16 31 H 0.07 1.36 5.80 -2.39 -0.01 1.34 16 32 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.43 5.38 8.82 -92.71 -0.82 4.57 16 34 H 0.35 8.08 9.06 -89.69 -0.81 7.27 16 35 H 0.35 10.12 8.58 -89.69 -0.77 9.35 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 40 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.15 2.71 6.27 -2.91 -0.02 2.69 16 42 H 0.17 0.76 6.91 -2.91 -0.02 0.74 16 43 H 0.29 0.09 7.23 -2.91 -0.02 0.07 16 Total: -1.00 -74.10 366.24 2.85 -71.25 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -1.30 Total: 19.23 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 5.54 Total: -11.09 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -3.37 Total: -109.17 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.04 Total: -15.34 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.10 2.85 -71.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573793639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.372 kcal (2) G-P(sol) polarization free energy of solvation -74.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds