Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46898 * 109.46885 * 2 1 4 4 C 1.46908 * 110.99714 * 160.54811 * 3 2 1 5 5 C 1.52996 * 109.47176 * 287.93363 * 4 3 2 6 6 C 1.46897 * 111.00408 * 284.50116 * 3 2 1 7 7 C 1.52998 * 109.47330 * 170.00115 * 6 3 2 8 8 S 1.81405 * 109.47095 * 179.97438 * 7 6 3 9 9 C 1.81406 * 102.99787 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.46756 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00390 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99670 * 179.72676 * 10 9 8 13 13 C 1.47426 * 125.64815 * 359.96972 * 12 10 9 14 14 C 1.55130 * 104.71940 * 155.81863 * 13 12 10 15 15 C 1.55148 * 101.49118 * 37.29242 * 14 13 12 16 16 O 1.42905 * 110.72078 * 82.69441 * 15 14 13 17 17 C 1.50700 * 110.87733 * 205.89954 * 15 14 13 18 18 H 1.08005 * 119.99667 * 351.82864 * 17 15 14 19 19 C 1.37870 * 120.00467 * 171.82884 * 17 15 14 20 20 N 1.31516 * 120.00148 * 5.90253 * 19 17 15 21 21 Si 1.86805 * 120.00156 * 185.90846 * 19 17 15 22 22 H 1.48497 * 109.47131 * 94.97929 * 21 19 17 23 23 H 1.48497 * 109.46799 * 214.97925 * 21 19 17 24 24 H 1.48501 * 109.47095 * 334.97807 * 21 19 17 25 25 C 1.47026 * 125.64522 * 180.27183 * 12 10 9 26 26 H 1.09000 * 109.47280 * 65.71835 * 1 2 3 27 27 H 1.08993 * 109.46826 * 185.72061 * 1 2 3 28 28 H 1.09000 * 109.46444 * 305.71362 * 1 2 3 29 29 H 1.09004 * 109.46763 * 240.00181 * 2 1 3 30 30 H 1.08995 * 109.47243 * 120.00226 * 2 1 3 31 31 H 1.09001 * 109.46989 * 47.93382 * 4 3 2 32 32 H 1.09000 * 109.46988 * 167.92673 * 4 3 2 33 33 H 1.09001 * 109.47189 * 187.38069 * 5 4 3 34 34 H 1.09007 * 109.46899 * 307.37661 * 5 4 3 35 35 H 1.09001 * 109.47588 * 67.37336 * 5 4 3 36 36 H 1.09008 * 109.47053 * 50.00084 * 6 3 2 37 37 H 1.09001 * 109.47547 * 290.00646 * 6 3 2 38 38 H 1.09003 * 109.46810 * 60.00344 * 7 6 3 39 39 H 1.08996 * 109.46972 * 300.00362 * 7 6 3 40 40 H 1.09004 * 109.46538 * 60.00376 * 9 8 7 41 41 H 1.08994 * 109.47009 * 300.00517 * 9 8 7 42 42 H 1.08995 * 110.36297 * 274.74478 * 13 12 10 43 43 H 1.08990 * 110.36768 * 37.06878 * 13 12 10 44 44 H 1.09009 * 111.18796 * 279.18646 * 14 13 12 45 45 H 1.09003 * 110.93784 * 155.29089 * 14 13 12 46 46 H 0.96705 * 113.99934 * 185.02265 * 16 15 14 47 47 H 0.97000 * 120.00234 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.88437 * 300.43920 * 25 12 10 49 49 H 1.08995 * 109.88171 * 61.61071 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4144 1.4503 0.4567 5 6 3.4710 1.1843 1.9623 6 6 1.8714 1.9959 -1.3277 7 6 2.1535 3.4966 -1.2330 8 16 1.9712 4.2508 -2.8727 9 6 2.3379 5.9998 -2.5605 10 6 2.2259 6.7741 -3.8484 11 8 1.9285 6.2024 -4.8759 12 7 2.4514 8.1028 -3.8576 13 6 2.8130 8.9210 -2.6857 14 6 3.5463 10.1537 -3.2768 15 6 2.7328 10.4046 -4.5739 16 8 1.5522 11.1590 -4.2924 17 6 3.5754 11.1035 -5.6095 18 1 4.5550 11.4753 -5.3474 19 6 3.0960 11.2684 -6.8916 20 7 1.8610 10.9212 -7.1816 21 14 4.2004 11.9848 -8.2170 22 1 4.8405 10.8816 -8.9776 23 1 3.3888 12.8172 -9.1409 24 1 5.2498 12.8250 -7.5860 25 6 2.3714 8.9774 -5.0367 26 1 -0.3634 0.4226 -0.9367 27 1 -0.3633 -1.0225 0.1024 28 1 -0.3632 0.5999 0.8344 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0040 0.6981 -0.0675 32 1 3.8194 2.4403 0.2471 33 1 4.4837 1.3610 2.3247 34 1 2.7797 1.8527 2.4756 35 1 3.1899 0.1498 2.1594 36 1 0.8547 1.8393 -1.6882 37 1 2.5770 1.5365 -2.0199 38 1 3.1703 3.6531 -0.8726 39 1 1.4479 3.9560 -0.5408 40 1 3.3498 6.0939 -2.1662 41 1 1.6271 6.3962 -1.8355 42 1 1.9168 9.2314 -2.1487 43 1 3.4785 8.3649 -2.0255 44 1 4.5861 9.9209 -3.5066 45 1 3.4792 11.0073 -2.6022 46 1 0.9698 11.2774 -5.0552 47 1 1.5238 11.0369 -8.0837 48 1 3.0794 8.6431 -5.7949 49 1 1.3590 8.9638 -5.4402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = -82.562557 kcal Electronic energy + Delta-G solvation = -26017.599756 eV Core-core repulsion = 22298.891755 eV Total energy + Delta-G solvation = -3718.708001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.42697 -38.60133 -37.25153 -34.33046 -32.33239 -32.27426 -32.19167 -30.75246 -29.44715 -28.27522 -27.64284 -24.95677 -23.54647 -23.32006 -22.64660 -20.70531 -19.72448 -18.86492 -17.23324 -16.75551 -16.48979 -16.21281 -15.87761 -15.73225 -15.18551 -15.02987 -14.63531 -14.57302 -14.22968 -14.20241 -13.67763 -13.22050 -13.02192 -12.90507 -12.85429 -12.57627 -12.45424 -12.24718 -12.00935 -11.94925 -11.85219 -11.71265 -11.66487 -11.44435 -11.08864 -11.03342 -10.95142 -10.86404 -10.72738 -10.50854 -10.21580 -9.92352 -9.50474 -9.36167 -8.72998 -8.69956 -8.34537 -7.98762 -7.62475 -6.31636 -4.39617 1.39250 2.51243 3.01244 3.19861 3.28132 3.30195 3.54407 3.61486 4.25283 4.46114 4.57725 4.66332 4.78136 4.81277 4.86567 4.97772 5.02663 5.09332 5.12930 5.17199 5.22660 5.25478 5.32192 5.33099 5.49681 5.52963 5.60103 5.62680 5.64193 5.71680 5.73866 5.86253 5.93556 5.95303 6.07773 6.44032 6.67825 6.68304 6.71024 6.79957 6.89192 7.21070 7.33496 7.69996 7.97479 8.11051 8.58582 8.65394 9.25166 9.36346 10.76447 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.002052 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.012432 B =13644.899419 C =13940.314273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.537 5.537 4 C 0.043 3.957 5 C -0.147 4.147 6 C 0.072 3.928 7 C -0.106 4.106 8 S -0.180 6.180 9 C -0.117 4.117 10 C 0.534 3.466 11 O -0.531 6.531 12 N -0.608 5.608 13 C 0.099 3.901 14 C -0.117 4.117 15 C 0.247 3.753 16 O -0.586 6.586 17 C -0.539 4.539 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.892 5.892 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.106 3.894 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.383 0.617 47 H 0.270 0.730 48 H 0.068 0.932 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -17.300 16.670 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.262 5.262 4 C -0.085 4.085 5 C -0.204 4.204 6 C -0.056 4.056 7 C -0.255 4.255 8 S 0.045 5.955 9 C -0.268 4.268 10 C 0.320 3.680 11 O -0.408 6.408 12 N -0.342 5.342 13 C -0.024 4.024 14 C -0.155 4.155 15 C 0.207 3.793 16 O -0.395 6.395 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.530 5.530 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.016 4.016 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.233 0.767 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.626 -17.882 15.937 23.961 hybrid contribution 1.144 0.559 -0.685 1.446 sum 1.771 -17.323 15.252 23.148 Atomic orbital electron populations 1.21785 0.94679 1.01505 1.02646 1.22123 0.96423 0.88442 1.00912 1.62089 1.20285 1.18168 1.25686 1.22184 0.88498 1.01546 0.96266 1.21785 1.01716 1.01763 0.95186 1.21732 1.02594 0.91729 0.89556 1.23517 1.04841 0.98704 0.98463 1.87431 1.92708 1.03534 1.11851 1.23487 1.06207 0.95956 1.01171 1.19150 0.78494 0.81343 0.89007 1.90726 1.48121 1.68114 1.33850 1.48723 1.67225 1.05903 1.12343 1.22415 0.98913 0.92768 0.88304 1.22782 0.98828 0.95693 0.98196 1.19522 0.83486 0.85963 0.90319 1.86107 1.35968 1.76140 1.41250 1.21478 1.02956 1.38682 0.94632 0.91486 1.25078 0.95151 0.94250 0.98803 1.69694 1.14544 1.47302 1.21484 0.86397 0.80421 0.79043 0.81124 1.20413 1.20978 1.19655 1.23023 1.02041 0.90796 0.85715 0.92619 0.92388 0.91732 0.94632 0.90633 0.94696 0.90496 0.92301 0.91674 0.92933 0.89509 0.93793 0.90236 0.89304 0.87674 0.87564 0.91475 0.92059 0.90352 0.90444 0.76681 0.91951 0.91405 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.93 37.16 0.37 -0.64 16 2 C 0.05 0.35 5.55 -3.82 -0.02 0.33 16 3 N -0.54 -4.44 4.39 -234.62 -1.03 -5.47 16 4 C 0.04 0.32 5.55 -3.82 -0.02 0.29 16 5 C -0.15 -0.91 9.85 37.16 0.37 -0.55 16 6 C 0.07 0.68 4.79 -3.83 -0.02 0.66 16 7 C -0.11 -1.06 5.90 37.16 0.22 -0.84 16 8 S -0.18 -2.56 20.87 -107.50 -2.24 -4.80 16 9 C -0.12 -1.64 5.43 36.00 0.20 -1.45 16 10 C 0.53 10.43 7.87 -10.99 -0.09 10.34 16 11 O -0.53 -12.52 16.19 5.55 0.09 -12.43 16 12 N -0.61 -12.17 3.32 -170.38 -0.57 -12.73 16 13 C 0.10 1.64 6.69 -2.41 -0.02 1.63 16 14 C -0.12 -2.23 6.25 -24.47 -0.15 -2.39 16 15 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 16 O -0.59 -14.41 13.08 -35.23 -0.46 -14.87 16 17 C -0.54 -13.90 8.14 -34.44 -0.28 -14.18 16 18 H 0.07 1.70 7.80 -52.48 -0.41 1.29 16 19 C 0.07 1.84 5.22 -17.82 -0.09 1.74 16 20 N -0.89 -23.64 11.00 55.43 0.61 -23.03 16 21 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.11 2.52 5.20 -3.06 -0.02 2.51 16 26 H 0.05 0.41 6.96 -51.93 -0.36 0.05 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.26 8.00 -51.93 -0.42 -0.16 16 30 H 0.08 0.48 6.37 -51.93 -0.33 0.15 16 31 H 0.03 0.26 8.05 -51.93 -0.42 -0.16 16 32 H 0.08 0.57 5.94 -51.93 -0.31 0.27 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.05 0.30 6.79 -51.93 -0.35 -0.05 16 36 H 0.09 0.84 6.71 -51.92 -0.35 0.49 16 37 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.08 0.72 6.28 -51.92 -0.33 0.39 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.24 7.86 -51.92 -0.41 0.83 16 41 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.79 7.49 -51.93 -0.39 0.41 16 44 H 0.08 1.44 8.05 -51.92 -0.42 1.02 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.38 9.69 7.50 45.56 0.34 10.03 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 48 H 0.07 1.78 7.80 -51.93 -0.40 1.37 16 49 H 0.07 1.76 7.91 -51.93 -0.41 1.35 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -29.50 398.01 -10.16 -39.65 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.90 Total: 9.09 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 0.37 Total: 3.23 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.99 Total: -41.23 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.37 Total: -27.29 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.24 Total: -4.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.50 -10.16 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.910 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds