Wall clock time and date at job start Tue Mar 31 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48502 * 109.47278 * 270.00153 * 3 2 1 5 5 H 1.48505 * 109.47125 * 30.00014 * 3 2 1 6 6 H 1.48504 * 109.47334 * 149.99915 * 3 2 1 7 7 C 1.38813 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00610 * 163.07103 * 7 2 1 9 9 N 1.36937 * 119.99678 * 343.08049 * 7 2 1 10 10 C 1.46926 * 120.62968 * 331.83856 * 9 7 2 11 11 C 1.53191 * 108.77714 * 233.59024 * 10 9 7 12 12 C 1.53042 * 109.31450 * 305.36315 * 11 10 9 13 13 C 1.52995 * 109.46235 * 181.38365 * 12 11 10 14 14 N 1.46496 * 109.47279 * 174.97655 * 13 12 11 15 15 C 1.34777 * 120.00188 * 180.02562 * 14 13 12 16 16 O 1.21564 * 119.99812 * 359.97438 * 15 14 13 17 17 C 1.47823 * 120.00269 * 180.02562 * 15 14 13 18 18 C 1.41583 * 120.37020 * 359.97438 * 17 15 14 19 19 C 1.34817 * 120.10816 * 180.02562 * 18 17 15 20 20 N 1.36055 * 120.83127 * 0.02562 * 19 18 17 21 21 N 1.40253 * 133.72858 * 179.97438 * 20 19 18 22 22 N 1.28971 * 107.02020 * 180.02562 * 21 20 19 23 23 N 1.28546 * 110.84170 * 0.02562 * 22 21 20 24 24 C 1.32617 * 110.18581 * 0.02562 * 23 22 21 25 25 C 1.38455 * 120.37559 * 180.23930 * 17 15 14 26 26 C 1.53046 * 109.52165 * 61.37077 * 12 11 10 27 27 C 1.46929 * 120.63435 * 151.82247 * 9 7 2 28 28 H 0.97002 * 119.99524 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58810 * 113.80332 * 10 9 7 30 30 H 1.08995 * 109.70471 * 353.45070 * 10 9 7 31 31 H 1.09006 * 109.49787 * 185.41837 * 11 10 9 32 32 H 1.09000 * 109.52430 * 65.33736 * 11 10 9 33 33 H 1.08997 * 109.46437 * 301.35972 * 12 11 10 34 34 H 1.09004 * 109.47009 * 54.97391 * 13 12 11 35 35 H 1.09000 * 109.47091 * 294.97788 * 13 12 11 36 36 H 0.97000 * 120.00209 * 359.97438 * 14 13 12 37 37 H 1.07997 * 119.94214 * 0.02562 * 18 17 15 38 38 H 1.08006 * 119.57788 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.51655 * 359.77724 * 25 17 15 40 40 H 1.09000 * 109.49779 * 58.58433 * 26 12 11 41 41 H 1.09000 * 109.49529 * 178.67397 * 26 12 11 42 42 H 1.08995 * 109.58626 * 246.19679 * 27 9 7 43 43 H 1.09008 * 109.58527 * 6.48081 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2718 9 7 1.3701 -2.3622 0.3462 10 6 0.2261 -2.3398 1.2679 11 6 0.4974 -3.3189 2.4144 12 6 0.8118 -4.7006 1.8365 13 6 1.0495 -5.6893 2.9796 14 7 1.2318 -7.0354 2.4311 15 6 1.4562 -8.0756 3.2583 16 8 1.5076 -7.8966 4.4596 17 6 1.6407 -9.4338 2.7047 18 6 1.5828 -9.6510 1.3069 19 6 1.7514 -10.8920 0.8078 20 7 1.9779 -11.9503 1.6323 21 7 2.1858 -13.3205 1.4163 22 7 2.3505 -13.8644 2.5740 23 7 2.2693 -12.9851 3.5082 24 6 2.0397 -11.7864 2.9896 25 6 1.8667 -10.5086 3.5477 26 6 2.0674 -4.6170 0.9654 27 6 1.8138 -3.6529 -0.1978 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6771 -2.6404 0.7367 30 1 0.0967 -1.3346 1.6687 31 1 -0.3833 -3.3838 3.0535 32 1 1.3468 -2.9676 3.0002 33 1 -0.0282 -5.0408 1.2309 34 1 0.1898 -5.6834 3.6497 35 1 1.9428 -5.3980 3.5321 36 1 1.1904 -7.1783 1.4725 37 1 1.4034 -8.8212 0.6394 38 1 1.7052 -11.0481 -0.2599 39 1 1.9141 -10.3663 4.6173 40 1 2.9022 -4.2531 1.5644 41 1 2.3045 -5.6059 0.5730 42 1 1.0402 -4.0606 -0.8485 43 1 2.7332 -3.5132 -0.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597294113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:11 Heat of formation + Delta-G solvation = 132.317523 kcal Electronic energy + Delta-G solvation = -27046.991829 eV Core-core repulsion = 23130.910184 eV Total energy + Delta-G solvation = -3916.081645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.89173 -40.58641 -38.80808 -37.92578 -35.31016 -34.52146 -33.29082 -32.50183 -31.07164 -30.88794 -29.86175 -27.50749 -25.61535 -25.30173 -23.93888 -23.36685 -22.42508 -21.45693 -21.17336 -19.45487 -19.07216 -18.54948 -17.54798 -17.38285 -16.84154 -16.13599 -15.67003 -15.62450 -15.26551 -14.87915 -14.20818 -14.18974 -13.96820 -13.77262 -13.61985 -13.50742 -13.27800 -12.98671 -12.59111 -12.49601 -12.46667 -12.14199 -11.95663 -11.56232 -11.46525 -11.08462 -10.78085 -10.75000 -10.64976 -10.58710 -10.35534 -10.31408 -10.00627 -9.69167 -9.57242 -9.37286 -9.19333 -8.54484 -6.75571 -5.86878 -3.29453 -0.50653 -0.17222 1.13754 1.54960 2.01590 2.49644 2.86150 3.17843 3.31997 3.39792 3.41749 3.49565 3.71346 3.96552 4.26021 4.33681 4.43066 4.69657 4.85444 4.91097 5.03161 5.05393 5.11815 5.21071 5.31860 5.33601 5.47369 5.68507 5.70238 5.73893 5.87023 5.93944 6.12555 6.18835 6.28831 6.47760 6.55368 6.62506 6.68433 6.85037 7.06034 7.27416 7.56879 7.70969 7.72443 7.83212 8.37441 9.13673 9.76979 10.32933 11.21689 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.002025 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.083565 B =13824.733254 C =14270.906398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.121 3.879 14 N -0.710 5.710 15 C 0.556 3.444 16 O -0.521 6.521 17 C -0.067 4.067 18 C -0.115 4.115 19 C 0.110 3.890 20 N -0.295 5.295 21 N -0.107 5.107 22 N -0.007 5.007 23 N -0.312 5.312 24 C 0.237 3.763 25 C -0.024 4.024 26 C -0.128 4.128 27 C 0.145 3.855 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.173 0.827 38 H 0.190 0.810 39 H 0.182 0.818 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -18.812 2.054 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.110 4.110 13 C -0.001 4.001 14 N -0.361 5.361 15 C 0.340 3.660 16 O -0.398 6.398 17 C -0.079 4.079 18 C -0.139 4.139 19 C -0.017 4.017 20 N -0.076 5.076 21 N -0.090 5.090 22 N 0.000 5.000 23 N -0.173 5.173 24 C -0.017 4.017 25 C -0.048 4.048 26 C -0.167 4.167 27 C 0.018 3.982 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.237 0.763 37 H 0.191 0.809 38 H 0.207 0.793 39 H 0.199 0.801 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.321 -20.142 2.862 20.387 hybrid contribution 0.199 1.683 -0.810 1.879 sum 1.521 -18.459 2.052 18.635 Atomic orbital electron populations 1.70019 1.05275 1.25590 1.53803 1.25046 0.95292 0.98462 1.00807 0.86320 0.79209 0.83638 0.77737 1.21389 1.21521 1.20469 1.19152 0.92519 0.84822 1.41856 0.91768 1.44043 1.35907 1.01504 1.50026 1.20762 0.88604 0.98220 0.87872 1.22186 1.00493 0.94447 1.00171 1.21340 0.98872 0.95472 0.95305 1.21742 1.02162 0.79202 0.97037 1.46004 1.71551 1.08233 1.10347 1.17752 0.78068 0.83554 0.86581 1.90858 1.49908 1.84733 1.14277 1.20410 0.99356 0.94838 0.93290 1.21247 1.01005 0.96576 0.95035 1.21609 0.98877 0.83462 0.97744 1.49065 1.41915 1.08960 1.07651 1.82841 1.26746 0.82089 1.17302 1.77912 1.06913 1.22218 0.92965 1.75277 1.24032 0.95042 1.22915 1.22772 1.00043 0.96950 0.81903 1.20804 0.95840 0.85206 1.02924 1.22097 0.97024 0.98657 0.98954 1.20885 0.97584 0.87090 0.92617 0.93584 0.96416 0.89354 0.92943 0.92270 0.91132 0.91117 0.90940 0.76269 0.80929 0.79311 0.80096 0.92001 0.93610 0.96623 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 11.19 55.49 0.62 -24.45 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.25 -6.59 9.58 -15.06 -0.14 -6.74 16 8 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 9 N -0.59 -13.60 2.99 -172.32 -0.52 -14.12 16 10 C 0.17 3.71 5.30 -3.71 -0.02 3.69 16 11 C -0.13 -2.17 5.36 -26.61 -0.14 -2.32 16 12 C -0.09 -1.17 2.19 -90.58 -0.20 -1.37 16 13 C 0.12 1.32 5.06 -4.05 -0.02 1.30 16 14 N -0.71 -5.88 5.23 -61.26 -0.32 -6.20 16 15 C 0.56 5.19 7.78 -12.34 -0.10 5.09 16 16 O -0.52 -6.86 16.37 5.31 0.09 -6.77 16 17 C -0.07 -0.46 5.90 -104.62 -0.62 -1.07 16 18 C -0.11 -0.44 9.48 -39.52 -0.37 -0.81 16 19 C 0.11 0.50 11.18 -16.89 -0.19 0.31 16 20 N -0.30 -2.56 3.94 -12.43 -0.05 -2.61 16 21 N -0.11 -1.19 13.98 60.35 0.84 -0.34 16 22 N -0.01 -0.09 13.35 60.35 0.81 0.72 16 23 N -0.31 -3.79 12.27 31.03 0.38 -3.41 16 24 C 0.24 2.31 8.02 -156.37 -1.25 1.06 16 25 C -0.02 -0.19 9.70 -38.65 -0.37 -0.56 16 26 C -0.13 -1.74 5.25 -26.61 -0.14 -1.88 16 27 C 0.14 2.63 6.52 -3.71 -0.02 2.60 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 2.20 6.07 -51.93 -0.31 1.89 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 2.22 5.72 -40.82 -0.23 1.98 16 37 H 0.17 0.11 6.46 -52.49 -0.34 -0.23 16 38 H 0.19 0.20 8.06 -52.48 -0.42 -0.22 16 39 H 0.18 1.36 7.67 -52.48 -0.40 0.95 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.46 7.15 -51.93 -0.37 0.09 16 42 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.97 7.93 -51.92 -0.41 0.56 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -33.02 356.87 -6.91 -39.93 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.43 Total: -3.23 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.68 Total: -0.72 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 1.77 Total: -50.42 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.09 Total: -6.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.02 -6.91 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.246 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds