Wall clock time and date at job start Tue Mar 31 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00029 * 2 1 4 4 N 1.46500 * 109.47295 * 124.06362 * 3 2 1 5 5 C 1.46499 * 120.00026 * 273.82235 * 4 3 2 6 6 C 1.50704 * 109.46819 * 272.87600 * 5 4 3 7 7 H 1.08003 * 119.99676 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99788 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99761 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00047 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47241 * 90.00251 * 10 8 6 12 12 H 1.48501 * 109.47092 * 209.99820 * 10 8 6 13 13 H 1.48502 * 109.47394 * 330.00256 * 10 8 6 14 14 C 1.34777 * 119.99735 * 93.81867 * 4 3 2 15 15 O 1.21285 * 119.99857 * 3.80267 * 14 4 3 16 16 C 1.50700 * 120.00044 * 183.80830 * 14 4 3 17 17 H 1.09003 * 109.47282 * 32.35523 * 16 14 4 18 18 C 1.52993 * 109.46908 * 272.35706 * 16 14 4 19 19 N 1.46494 * 109.47386 * 152.35574 * 16 14 4 20 20 C 1.36322 * 126.27662 * 59.97299 * 19 16 14 21 21 N 1.30137 * 109.97797 * 180.02562 * 20 19 16 22 22 C 1.35475 * 109.44363 * 0.02562 * 21 20 19 23 23 C 1.37195 * 126.27977 * 239.97437 * 19 16 14 24 24 N 1.32894 * 134.91801 * 0.03896 * 23 19 16 25 25 C 1.31652 * 120.63793 * 179.97438 * 24 23 19 26 26 N 1.32047 * 122.46419 * 0.02562 * 25 24 23 27 27 C 1.32912 * 121.18949 * 359.97438 * 26 25 24 28 28 N 1.38396 * 120.76857 * 180.02562 * 27 26 25 29 29 H 1.08002 * 120.00464 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00127 * 179.97438 * 1 2 3 31 31 H 1.07993 * 119.99895 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46899 * 4.06422 * 3 2 1 33 33 H 1.08997 * 109.47343 * 244.06968 * 3 2 1 34 34 H 1.09000 * 109.47658 * 32.87575 * 5 4 3 35 35 H 1.09000 * 109.46886 * 152.87746 * 5 4 3 36 36 H 0.96998 * 120.00296 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.47406 * 54.49770 * 18 16 14 38 38 H 1.08997 * 109.47667 * 174.49273 * 18 16 14 39 39 H 1.08998 * 109.47347 * 294.49718 * 18 16 14 40 40 H 1.08000 * 125.00999 * 0.06124 * 20 19 16 41 41 H 1.07995 * 118.76577 * 179.97438 * 25 24 23 42 42 H 0.96996 * 119.99708 * 0.02562 * 28 27 26 43 43 H 0.96997 * 119.99933 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9776 1.3412 1.1442 5 6 2.5003 1.8067 2.4487 6 6 2.6426 3.3048 2.5303 7 1 3.0476 3.8551 1.6938 8 6 2.2556 3.9728 3.6727 9 7 2.3793 5.2802 3.7437 10 14 1.5545 3.0210 5.1190 11 1 2.6577 2.6173 6.0275 12 1 0.5942 3.8796 5.8578 13 1 0.8544 1.8095 4.6217 14 6 4.2577 0.9462 0.9967 15 8 4.6714 0.6264 -0.0977 16 6 5.1750 0.9017 2.1915 17 1 4.5996 0.6494 3.0822 18 6 5.8334 2.2698 2.3802 19 7 6.2098 -0.1125 1.9753 20 6 7.1202 -0.1325 0.9609 21 7 7.8889 -1.1765 1.0738 22 6 7.5215 -1.8912 2.1644 23 6 6.4404 -1.2165 2.7566 24 7 5.8892 -1.7195 3.8563 25 6 6.3479 -2.8334 4.3874 26 7 7.3621 -3.5009 3.8685 27 6 7.9766 -3.0747 2.7697 28 7 9.0384 -3.7816 2.2329 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3573 2.1323 0.0728 33 1 2.6343 1.3951 -0.9242 34 1 1.4520 1.5341 2.5706 35 1 3.0907 1.3421 3.2385 36 1 2.1075 5.7501 4.5475 37 1 5.0628 3.0382 2.4435 38 1 6.4200 2.2672 3.2989 39 1 6.4862 2.4788 1.5329 40 1 7.1931 0.6091 0.1791 41 1 5.8776 -3.2149 5.2816 42 1 9.3421 -4.5984 2.6588 43 1 9.4785 -3.4605 1.4303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597683021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:04 Heat of formation + Delta-G solvation = 98.016619 kcal Electronic energy + Delta-G solvation = -28653.778928 eV Core-core repulsion = 24736.209883 eV Total energy + Delta-G solvation = -3917.569044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47677 -39.89134 -38.90394 -35.93075 -35.72000 -34.59461 -33.43104 -32.38227 -31.97538 -30.09032 -29.15127 -28.33913 -26.28405 -24.25518 -24.01734 -23.33061 -22.75488 -21.02005 -19.91704 -19.05508 -18.41333 -17.92402 -17.18307 -16.89657 -16.49422 -16.36746 -15.83066 -15.53087 -14.94969 -14.70011 -14.48458 -14.28429 -14.22675 -13.88215 -13.55225 -13.39866 -12.97309 -12.61044 -12.28535 -12.09878 -11.99741 -11.82723 -11.72513 -11.61155 -11.35012 -11.19252 -11.03645 -10.80226 -10.39183 -10.28884 -10.08183 -9.78712 -9.53808 -9.25735 -9.02937 -8.99617 -8.83891 -8.06297 -7.85128 -6.36162 -4.39784 0.96896 1.42891 2.21928 2.44382 2.85499 2.93752 3.10960 3.19158 3.22178 3.25045 3.64880 4.00771 4.10738 4.15758 4.21380 4.50296 4.74751 4.91158 4.94430 5.02292 5.15674 5.18064 5.21048 5.36951 5.73815 5.77926 5.80958 5.99354 6.02689 6.05126 6.15910 6.24666 6.48189 6.48990 6.60826 6.73510 6.76006 6.81111 6.94494 7.07856 7.13666 7.26338 7.59015 7.78299 7.80970 8.19547 8.35613 8.47135 8.67425 9.22070 10.75202 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.004130 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.070298 B = 6778.441533 C = 7487.301387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.143 3.857 4 N -0.575 5.575 5 C 0.202 3.798 6 C -0.547 4.547 7 H 0.083 0.917 8 C 0.083 3.917 9 N -0.884 5.884 10 Si 0.865 3.135 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.513 3.487 15 O -0.557 6.557 16 C 0.122 3.878 17 H 0.131 0.869 18 C -0.162 4.162 19 N -0.452 5.452 20 C 0.289 3.711 21 N -0.479 5.479 22 C -0.105 4.105 23 C 0.296 3.704 24 N -0.553 5.553 25 C 0.353 3.647 26 N -0.596 5.596 27 C 0.502 3.498 28 N -0.823 5.823 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.031 0.969 36 H 0.269 0.731 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.220 0.780 41 H 0.202 0.798 42 H 0.407 0.593 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -12.522 -2.034 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.020 3.980 4 N -0.304 5.304 5 C 0.082 3.918 6 C -0.585 4.585 7 H 0.101 0.899 8 C -0.122 4.122 9 N -0.520 5.520 10 Si 0.691 3.309 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.187 1.187 14 C 0.299 3.701 15 O -0.437 6.437 16 C 0.017 3.983 17 H 0.149 0.851 18 C -0.220 4.220 19 N -0.143 5.143 20 C 0.003 3.997 21 N -0.198 5.198 22 C -0.232 4.232 23 C 0.055 3.945 24 N -0.277 5.277 25 C 0.061 3.939 26 N -0.326 5.326 27 C 0.248 3.752 28 N -0.366 5.366 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.237 0.763 41 H 0.218 0.782 42 H 0.237 0.763 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.723 -12.849 -2.220 14.671 hybrid contribution -0.620 0.055 0.624 0.881 sum 6.103 -12.794 -1.596 14.265 Atomic orbital electron populations 1.23826 0.95732 1.01806 1.00991 1.23340 0.96178 0.99076 0.99471 1.20509 0.92505 0.95054 0.89889 1.47833 1.08432 1.61594 1.12495 1.19992 0.96102 0.96384 0.79366 1.21264 1.44787 0.89403 1.03085 0.89948 1.24831 0.94543 0.94702 0.98170 1.69869 1.46240 1.07151 1.28746 0.87004 0.80070 0.80569 0.83228 1.19510 1.20694 1.18720 1.20232 0.82924 0.77456 0.89476 1.90641 1.75440 1.50842 1.26741 1.21540 0.87789 0.89364 0.99586 0.85138 1.22265 1.03153 0.94221 1.02386 1.45104 1.28044 1.19152 1.22010 1.25316 0.85496 0.97403 0.91510 1.70282 1.26919 1.05349 1.17281 1.19684 1.02836 1.00604 1.00081 1.18725 0.94119 0.89286 0.92371 1.67229 1.33657 1.15593 1.11192 1.24357 0.87796 0.85131 0.96621 1.67993 1.15192 1.36478 1.12978 1.17731 0.85924 0.84566 0.86946 1.42131 1.33733 1.28679 1.32101 0.88153 0.88751 0.87971 0.89218 0.89373 0.94261 0.95100 0.92111 0.85964 0.91300 0.91841 0.76342 0.78198 0.76341 0.75170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 29.02 0.42 -2.06 16 2 C -0.16 -2.47 9.85 -36.02 -0.35 -2.83 16 3 C 0.14 2.43 5.93 -5.19 -0.03 2.40 16 4 N -0.57 -10.91 2.44 -176.43 -0.43 -11.34 16 5 C 0.20 4.16 4.11 -5.19 -0.02 4.14 16 6 C -0.55 -13.04 8.00 -34.44 -0.28 -13.31 16 7 H 0.08 2.18 8.03 -52.48 -0.42 1.75 16 8 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.88 -23.94 13.96 55.43 0.77 -23.17 16 10 Si 0.87 18.83 27.47 -169.99 -4.67 14.16 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 14 C 0.51 9.68 6.86 -10.99 -0.08 9.60 16 15 O -0.56 -11.11 14.65 5.55 0.08 -11.03 16 16 C 0.12 2.13 2.69 -69.09 -0.19 1.94 16 17 H 0.13 2.38 5.96 -51.93 -0.31 2.07 16 18 C -0.16 -2.65 9.28 37.15 0.34 -2.30 16 19 N -0.45 -7.69 2.60 -111.75 -0.29 -7.98 16 20 C 0.29 4.58 10.44 -89.50 -0.93 3.64 16 21 N -0.48 -7.68 11.28 -11.85 -0.13 -7.82 16 22 C -0.10 -1.71 7.17 -84.54 -0.61 -2.32 16 23 C 0.30 5.19 8.01 -155.80 -1.25 3.94 16 24 N -0.55 -9.22 10.47 -13.90 -0.15 -9.37 16 25 C 0.35 4.87 12.25 -92.06 -1.13 3.74 16 26 N -0.60 -8.28 10.45 -13.61 -0.14 -8.42 16 27 C 0.50 7.07 7.87 -154.65 -1.22 5.85 16 28 N -0.82 -8.14 9.05 31.37 0.28 -7.85 16 29 H 0.10 1.28 7.84 -52.49 -0.41 0.86 16 30 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.51 7.75 -51.93 -0.40 1.11 16 33 H 0.09 1.50 7.26 -51.93 -0.38 1.13 16 34 H 0.04 0.82 7.15 -51.93 -0.37 0.45 16 35 H 0.03 0.63 5.09 -51.93 -0.26 0.36 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.12 2.31 5.97 -51.93 -0.31 2.00 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 40 H 0.22 2.97 7.78 -52.49 -0.41 2.56 16 41 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 42 H 0.41 3.03 8.95 -40.82 -0.37 2.67 16 43 H 0.42 3.67 8.85 -40.82 -0.36 3.31 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -30.03 364.42 -9.86 -39.89 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.27 Total: 13.03 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: -5.41 Total: 14.40 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -0.08 Total: -75.94 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.67 Total: 14.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.03 -9.86 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.904 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds