Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00029 * 2 1 4 4 N 1.46500 * 109.47295 * 124.06362 * 3 2 1 5 5 C 1.46499 * 120.00026 * 273.82235 * 4 3 2 6 6 C 1.50704 * 109.46819 * 272.87600 * 5 4 3 7 7 H 1.08003 * 119.99676 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99788 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99761 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00047 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47241 * 90.00251 * 10 8 6 12 12 H 1.48501 * 109.47092 * 209.99820 * 10 8 6 13 13 H 1.48502 * 109.47394 * 330.00256 * 10 8 6 14 14 C 1.34777 * 119.99735 * 93.81867 * 4 3 2 15 15 O 1.21285 * 119.99857 * 3.80267 * 14 4 3 16 16 C 1.50700 * 120.00044 * 183.80830 * 14 4 3 17 17 H 1.09003 * 109.47282 * 32.35523 * 16 14 4 18 18 C 1.52993 * 109.46908 * 272.35706 * 16 14 4 19 19 N 1.46494 * 109.47386 * 152.35574 * 16 14 4 20 20 C 1.36322 * 126.27662 * 59.97299 * 19 16 14 21 21 N 1.30137 * 109.97797 * 180.02562 * 20 19 16 22 22 C 1.35475 * 109.44363 * 0.02562 * 21 20 19 23 23 C 1.37195 * 126.27977 * 239.97437 * 19 16 14 24 24 N 1.32894 * 134.91801 * 0.03896 * 23 19 16 25 25 C 1.31652 * 120.63793 * 179.97438 * 24 23 19 26 26 N 1.32047 * 122.46419 * 0.02562 * 25 24 23 27 27 C 1.32912 * 121.18949 * 359.97438 * 26 25 24 28 28 N 1.38396 * 120.76857 * 180.02562 * 27 26 25 29 29 H 1.08002 * 120.00464 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00127 * 179.97438 * 1 2 3 31 31 H 1.07993 * 119.99895 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46899 * 4.06422 * 3 2 1 33 33 H 1.08997 * 109.47343 * 244.06968 * 3 2 1 34 34 H 1.09000 * 109.47658 * 32.87575 * 5 4 3 35 35 H 1.09000 * 109.46886 * 152.87746 * 5 4 3 36 36 H 0.96998 * 120.00296 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.47406 * 54.49770 * 18 16 14 38 38 H 1.08997 * 109.47667 * 174.49273 * 18 16 14 39 39 H 1.08998 * 109.47347 * 294.49718 * 18 16 14 40 40 H 1.08000 * 125.00999 * 0.06124 * 20 19 16 41 41 H 1.07995 * 118.76577 * 179.97438 * 25 24 23 42 42 H 0.96996 * 119.99708 * 0.02562 * 28 27 26 43 43 H 0.96997 * 119.99933 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9776 1.3412 1.1442 5 6 2.5003 1.8067 2.4487 6 6 2.6426 3.3048 2.5303 7 1 3.0476 3.8551 1.6938 8 6 2.2556 3.9728 3.6727 9 7 2.3793 5.2802 3.7437 10 14 1.5545 3.0210 5.1190 11 1 2.6577 2.6173 6.0275 12 1 0.5942 3.8796 5.8578 13 1 0.8544 1.8095 4.6217 14 6 4.2577 0.9462 0.9967 15 8 4.6714 0.6264 -0.0977 16 6 5.1750 0.9017 2.1915 17 1 4.5996 0.6494 3.0822 18 6 5.8334 2.2698 2.3802 19 7 6.2098 -0.1125 1.9753 20 6 7.1202 -0.1325 0.9609 21 7 7.8889 -1.1765 1.0738 22 6 7.5215 -1.8912 2.1644 23 6 6.4404 -1.2165 2.7566 24 7 5.8892 -1.7195 3.8563 25 6 6.3479 -2.8334 4.3874 26 7 7.3621 -3.5009 3.8685 27 6 7.9766 -3.0747 2.7697 28 7 9.0384 -3.7816 2.2329 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3573 2.1323 0.0728 33 1 2.6343 1.3951 -0.9242 34 1 1.4520 1.5341 2.5706 35 1 3.0907 1.3421 3.2385 36 1 2.1075 5.7501 4.5475 37 1 5.0628 3.0382 2.4435 38 1 6.4200 2.2672 3.2989 39 1 6.4862 2.4788 1.5329 40 1 7.1931 0.6091 0.1791 41 1 5.8776 -3.2149 5.2816 42 1 9.3421 -4.5984 2.6588 43 1 9.4785 -3.4605 1.4303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597683021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = 80.737240 kcal Electronic energy + Delta-G solvation = -28654.528218 eV Core-core repulsion = 24736.209883 eV Total energy + Delta-G solvation = -3918.318334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.66905 -41.28405 -40.10653 -37.37069 -36.83679 -35.90900 -34.94410 -34.01060 -33.04880 -31.36500 -30.26198 -30.06827 -27.66445 -25.52549 -25.18303 -24.62726 -24.38521 -22.28284 -21.10922 -20.32928 -19.55332 -19.27048 -18.97684 -18.28464 -17.83996 -17.45402 -17.04415 -16.79558 -16.47238 -15.98021 -15.82765 -15.61124 -15.44764 -15.02918 -14.95652 -14.66698 -14.47285 -14.19835 -13.78105 -13.44280 -13.36730 -13.17965 -13.09189 -12.95647 -12.77397 -12.61510 -12.43784 -12.33780 -11.98291 -11.67653 -11.49856 -11.31761 -10.83515 -10.75073 -10.43486 -10.27273 -10.15464 -9.62365 -8.94551 -8.29771 -6.36325 -0.14217 0.25941 0.96465 1.26475 1.40142 1.44327 1.44908 1.50232 1.66359 2.24635 2.30481 2.33994 2.87458 2.94929 3.03409 3.11727 3.23083 3.40356 3.64269 3.81750 3.87164 4.00405 4.11270 4.12284 4.44142 4.51148 4.57355 4.63202 4.72635 4.75997 4.82853 4.91777 4.98429 5.19139 5.36917 5.38782 5.43711 5.62925 5.66150 5.80203 5.84618 6.11183 6.13533 6.42574 6.57548 6.68362 6.70994 6.97255 7.28778 7.28986 8.84873 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.004130 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.070298 B = 6778.441533 C = 7487.301387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.184 4.184 3 C 0.142 3.858 4 N -0.580 5.580 5 C 0.213 3.787 6 C -0.533 4.533 7 H 0.046 0.954 8 C 0.034 3.966 9 N -0.932 5.932 10 Si 0.922 3.078 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.243 1.243 14 C 0.511 3.489 15 O -0.570 6.570 16 C 0.131 3.869 17 H 0.123 0.877 18 C -0.152 4.152 19 N -0.456 5.456 20 C 0.278 3.722 21 N -0.479 5.479 22 C -0.125 4.125 23 C 0.274 3.726 24 N -0.580 5.580 25 C 0.357 3.643 26 N -0.597 5.597 27 C 0.500 3.500 28 N -0.800 5.800 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.269 0.731 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.234 0.766 41 H 0.238 0.762 42 H 0.421 0.579 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -14.996 -1.284 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.020 3.980 4 N -0.308 5.308 5 C 0.091 3.909 6 C -0.572 4.572 7 H 0.064 0.936 8 C -0.167 4.167 9 N -0.571 5.571 10 Si 0.745 3.255 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.167 1.167 14 C 0.297 3.703 15 O -0.450 6.450 16 C 0.025 3.975 17 H 0.141 0.859 18 C -0.210 4.210 19 N -0.148 5.148 20 C -0.008 4.008 21 N -0.198 5.198 22 C -0.252 4.252 23 C 0.034 3.966 24 N -0.306 5.306 25 C 0.066 3.934 26 N -0.328 5.328 27 C 0.245 3.755 28 N -0.344 5.344 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.250 0.750 41 H 0.254 0.746 42 H 0.254 0.746 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.614 -15.381 -1.504 16.810 hybrid contribution -0.517 0.747 0.312 0.961 sum 6.097 -14.634 -1.191 15.898 Atomic orbital electron populations 1.24078 0.94945 1.03281 0.97459 1.23120 0.96800 0.97669 1.02700 1.20574 0.92264 0.96233 0.88936 1.47884 1.08942 1.61491 1.12498 1.19772 0.96550 0.94058 0.80528 1.21315 1.43234 0.90993 1.01619 0.93595 1.25539 0.95052 0.95262 1.00808 1.70002 1.48381 1.08994 1.29676 0.86091 0.79519 0.79802 0.80053 1.18901 1.21114 1.16683 1.20497 0.82967 0.77015 0.89790 1.90623 1.75602 1.51427 1.27384 1.21351 0.87802 0.89937 0.98385 0.85947 1.22126 1.02446 0.92877 1.03578 1.45067 1.28062 1.19167 1.22473 1.25653 0.85463 0.97911 0.91773 1.70255 1.26892 1.05368 1.17261 1.19963 1.03253 1.01598 1.00412 1.19058 0.94886 0.89622 0.93059 1.67299 1.34760 1.16976 1.11594 1.25178 0.87190 0.84043 0.96940 1.68137 1.15426 1.36325 1.12896 1.17959 0.86498 0.84229 0.86858 1.42116 1.32017 1.28446 1.31785 0.87414 0.86406 0.88659 0.89450 0.90051 0.93626 0.94161 0.92198 0.88719 0.90297 0.90434 0.74958 0.74582 0.74645 0.74366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 14.32 67.79 0.97 -2.90 16 2 C -0.18 -5.42 9.85 25.65 0.25 -5.17 16 3 C 0.14 4.82 5.93 85.63 0.51 5.33 16 4 N -0.58 -22.04 2.44 -830.49 -2.03 -24.07 16 5 C 0.21 8.62 4.11 85.63 0.35 8.97 16 6 C -0.53 -25.82 8.00 25.60 0.20 -25.62 16 7 H 0.05 2.53 8.03 -2.91 -0.02 2.50 16 8 C 0.03 1.71 5.47 84.66 0.46 2.17 16 9 N -0.93 -51.72 13.96 21.45 0.30 -51.42 16 10 Si 0.92 38.17 27.47 68.60 1.88 40.06 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 12 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 14 C 0.51 19.38 6.86 87.66 0.60 19.98 16 15 O -0.57 -22.87 14.65 -3.05 -0.04 -22.92 16 16 C 0.13 4.56 2.69 44.24 0.12 4.68 16 17 H 0.12 4.45 5.96 -2.39 -0.01 4.43 16 18 C -0.15 -5.02 9.28 71.98 0.67 -4.35 16 19 N -0.46 -15.39 2.60 -507.48 -1.32 -16.72 16 20 C 0.28 8.70 10.44 179.96 1.88 10.58 16 21 N -0.48 -14.99 11.28 -191.39 -2.16 -17.15 16 22 C -0.12 -3.96 7.17 39.69 0.28 -3.67 16 23 C 0.27 9.41 8.01 133.86 1.07 10.48 16 24 N -0.58 -18.70 10.47 -197.88 -2.07 -20.77 16 25 C 0.36 9.12 12.25 180.85 2.22 11.33 16 26 N -0.60 -15.25 10.45 -196.96 -2.06 -17.31 16 27 C 0.50 13.16 7.87 133.45 1.05 14.21 16 28 N -0.80 -13.94 9.05 -54.66 -0.49 -14.44 16 29 H 0.11 2.46 7.84 -2.91 -0.02 2.44 16 30 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.10 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.09 2.95 7.75 -2.39 -0.02 2.93 16 33 H 0.08 2.83 7.26 -2.39 -0.02 2.81 16 34 H 0.05 1.82 7.15 -2.39 -0.02 1.80 16 35 H 0.04 1.59 5.09 -2.39 -0.01 1.58 16 36 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 37 H 0.09 3.70 5.97 -2.39 -0.01 3.68 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 2.28 7.79 -2.39 -0.02 2.26 16 40 H 0.23 6.26 7.78 -2.91 -0.02 6.24 16 41 H 0.24 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.42 5.12 8.95 -92.71 -0.83 4.29 16 43 H 0.42 6.53 8.85 -92.71 -0.82 5.71 16 Total: -1.00 -65.06 364.42 2.02 -63.04 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.63 Total: 35.67 kcal Atomic # 6 Polarization: 35.38 SS G_CDS: 10.64 Total: 46.02 kcal Atomic # 7 Polarization: -152.04 SS G_CDS: -9.83 Total: -161.87 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.88 Total: 40.06 kcal Total: -65.06 2.02 -63.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.778 kcal (2) G-P(sol) polarization free energy of solvation -65.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds