Wall clock time and date at job start Tue Mar 31 2020 04:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00029 * 2 1 4 4 H 1.48497 * 109.46994 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46807 * 300.00254 * 3 2 1 6 6 H 1.48501 * 109.46823 * 60.00188 * 3 2 1 7 7 C 1.38814 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00178 * 163.06378 * 7 2 1 9 9 N 1.36939 * 119.99953 * 343.05587 * 7 2 1 10 10 C 1.46926 * 120.63210 * 331.84367 * 9 7 2 11 11 C 1.53189 * 108.77884 * 233.63324 * 10 9 7 12 12 C 1.53044 * 109.30798 * 305.36508 * 11 10 9 13 13 N 1.46508 * 109.45658 * 181.38524 * 12 11 10 14 14 C 1.34778 * 119.99673 * 154.97185 * 13 12 11 15 15 O 1.21915 * 119.99894 * 0.02562 * 14 13 12 16 16 N 1.33485 * 119.99902 * 180.02562 * 14 13 12 17 17 C 1.33325 * 120.00138 * 180.02562 * 16 14 13 18 18 N 1.34832 * 126.19394 * 359.94580 * 17 16 14 19 19 H 0.96993 * 126.15918 * 0.06280 * 18 17 16 20 20 N 1.40109 * 107.67884 * 180.02562 * 18 17 16 21 21 C 1.31342 * 108.22139 * 359.97438 * 20 18 17 22 22 C 1.41753 * 131.98745 * 179.97438 * 21 20 18 23 23 C 1.35560 * 119.32818 * 180.02562 * 22 21 20 24 24 C 1.40939 * 119.84414 * 359.71690 * 23 22 21 25 25 C 1.34535 * 120.55312 * 0.57637 * 24 23 22 26 26 N 1.36464 * 126.19979 * 179.97438 * 17 16 14 27 27 C 1.53034 * 109.53091 * 61.37352 * 12 11 10 28 28 C 1.46919 * 120.62984 * 151.86723 * 9 7 2 29 29 H 0.96994 * 120.00179 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58610 * 113.83814 * 10 9 7 31 31 H 1.09003 * 109.70005 * 353.48602 * 10 9 7 32 32 H 1.09000 * 109.50056 * 185.41811 * 11 10 9 33 33 H 1.09005 * 109.50097 * 65.31245 * 11 10 9 34 34 H 1.08999 * 109.46063 * 301.35471 * 12 11 10 35 35 H 0.96996 * 119.99695 * 334.97076 * 13 12 11 36 36 H 1.08006 * 120.33266 * 0.02562 * 22 21 20 37 37 H 1.08004 * 120.07815 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.72365 * 180.30349 * 24 23 22 39 39 H 1.07992 * 119.66237 * 179.70651 * 25 24 23 40 40 H 1.09004 * 109.50106 * 58.57569 * 27 12 11 41 41 H 1.08995 * 109.50047 * 178.67609 * 27 12 11 42 42 H 1.09000 * 109.59021 * 246.15791 * 28 9 7 43 43 H 1.09003 * 109.59076 * 6.43863 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3701 -2.3625 0.3446 10 6 0.2264 -2.3408 1.2666 11 6 0.4985 -3.3198 2.4130 12 6 0.8135 -4.7013 1.8346 13 7 1.0419 -5.6481 2.9291 14 6 0.8385 -6.9660 2.7335 15 8 0.4650 -7.3702 1.6457 16 7 1.0461 -7.8286 3.7309 17 6 0.8454 -9.1323 3.5373 18 7 0.4346 -9.7133 2.3919 19 1 0.2326 -9.2579 1.5597 20 7 0.3530 -11.0932 2.6202 21 6 0.7054 -11.3253 3.8640 22 6 0.8016 -12.5240 4.6145 23 6 1.2006 -12.4669 5.9088 24 6 1.5196 -11.2232 6.4902 25 6 1.4207 -10.0883 5.7746 26 7 1.0179 -10.1205 4.4625 27 6 2.0687 -4.6170 0.9633 28 6 1.8143 -3.6528 -0.1997 29 1 -0.4850 0.8400 0.0004 30 1 -0.6767 -2.6417 0.7357 31 1 0.0967 -1.3356 1.6677 32 1 -0.3819 -3.3853 3.0523 33 1 1.3483 -2.9680 2.9980 34 1 -0.0266 -5.0418 1.2294 35 1 1.3395 -5.3264 3.7945 36 1 0.5596 -13.4732 4.1596 37 1 1.2786 -13.3728 6.4917 38 1 1.8419 -11.1805 7.5200 39 1 1.6642 -9.1427 6.2358 40 1 2.9036 -4.2528 1.5620 41 1 2.3061 -5.6057 0.5706 42 1 1.0407 -4.0608 -0.8503 43 1 2.7334 -3.5126 -0.7687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609810751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:57 Heat of formation + Delta-G solvation = 135.011395 kcal Electronic energy + Delta-G solvation = -27409.913773 eV Core-core repulsion = 23493.948943 eV Total energy + Delta-G solvation = -3915.964830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.35167 -39.87895 -38.31384 -37.34386 -34.94632 -34.34939 -33.33835 -32.19544 -31.58804 -30.09758 -29.52322 -28.78598 -25.60535 -25.04022 -23.46052 -23.31879 -22.18616 -21.72029 -20.37389 -19.36559 -18.37593 -18.22908 -17.69693 -17.02750 -16.79967 -16.41713 -15.99790 -15.46447 -15.18309 -14.89109 -14.80621 -14.33967 -13.69626 -13.49094 -13.20952 -13.08765 -12.92810 -12.66354 -12.61410 -12.32318 -12.09740 -11.98098 -11.41246 -11.12520 -10.99497 -10.78246 -10.72227 -10.69009 -10.39538 -10.20729 -9.98446 -9.74141 -9.69444 -9.52326 -9.36710 -8.64373 -8.42814 -7.85695 -6.64739 -5.76358 -3.18376 -0.00483 0.85413 1.24680 1.51265 2.53767 2.74386 3.36042 3.40011 3.46828 3.49411 3.65238 3.83892 4.04827 4.25111 4.36418 4.52086 4.52334 4.89383 5.11668 5.29020 5.38344 5.43028 5.50229 5.57032 5.58845 5.66958 5.77319 5.96277 6.13825 6.21928 6.29899 6.35980 6.51585 6.60400 6.65140 6.70007 6.85286 7.03657 7.06632 7.19210 7.36667 7.41700 7.65469 7.82595 7.99014 8.47974 8.88739 9.24080 9.87399 10.44800 11.32632 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.038010 B = 0.002117 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.477126 B =13221.629986 C =13529.134233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.164 3.836 13 N -0.703 5.703 14 C 0.686 3.314 15 O -0.639 6.639 16 N -0.660 5.660 17 C 0.615 3.385 18 N -0.486 5.486 19 H 0.475 0.525 20 N -0.292 5.292 21 C 0.293 3.707 22 C -0.123 4.123 23 C -0.041 4.041 24 C -0.184 4.184 25 C 0.136 3.864 26 N -0.438 5.438 27 C -0.138 4.138 28 C 0.148 3.852 29 H 0.253 0.747 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.178 0.822 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -26.563 16.817 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.060 3.940 13 N -0.352 5.352 14 C 0.384 3.616 15 O -0.521 6.521 16 N -0.429 5.429 17 C 0.254 3.746 18 N -0.226 5.226 19 H 0.337 0.663 20 N -0.118 5.118 21 C 0.027 3.973 22 C -0.145 4.145 23 C -0.066 4.066 24 C -0.208 4.208 25 C 0.016 3.984 26 N -0.133 5.133 27 C -0.179 4.179 28 C 0.021 3.979 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.178 0.822 37 H 0.168 0.832 38 H 0.177 0.823 39 H 0.195 0.805 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.748 -26.414 15.442 30.646 hybrid contribution 0.474 1.408 0.064 1.487 sum 2.223 -25.005 15.506 29.507 Atomic orbital electron populations 1.70034 1.05246 1.25377 1.54147 1.25061 0.95306 0.98433 1.01007 0.86222 0.79362 0.83958 0.77239 1.20274 1.21765 1.21575 1.19236 0.92590 0.84742 1.41367 0.91619 1.44102 1.35835 1.01667 1.49971 1.20739 0.88881 0.97895 0.87656 1.22543 1.00612 0.94617 1.00814 1.20986 0.98344 0.87738 0.86953 1.45120 1.69893 1.04083 1.16113 1.16584 0.77777 0.83858 0.83340 1.90605 1.54583 1.77883 1.29018 1.68916 1.44319 0.94521 1.35098 1.19348 0.87477 0.87322 0.80478 1.47719 1.57904 1.03028 1.13972 0.66285 1.77765 1.27011 0.94916 1.12095 1.21769 0.98261 0.87334 0.89894 1.20274 1.05988 0.94353 0.93852 1.21247 0.92768 0.98713 0.93849 1.20873 1.07113 0.90867 1.01899 1.21898 0.94559 1.02058 0.79846 1.42216 1.53939 1.06227 1.10931 1.22386 0.97281 0.99390 0.98821 1.20873 0.97831 0.86523 0.92649 0.93679 0.96128 0.89001 0.92718 0.92101 0.90153 0.76575 0.82188 0.83184 0.82314 0.80456 0.92363 0.92892 0.96220 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 9 N -0.59 -15.30 2.99 -172.32 -0.52 -15.82 16 10 C 0.17 4.25 5.30 -3.71 -0.02 4.23 16 11 C -0.15 -2.85 5.55 -26.61 -0.15 -3.00 16 12 C 0.16 3.12 2.42 -67.89 -0.16 2.96 16 13 N -0.70 -11.85 5.08 -58.90 -0.30 -12.15 16 14 C 0.69 12.18 8.43 -88.06 -0.74 11.44 16 15 O -0.64 -12.62 13.35 5.00 0.07 -12.56 16 16 N -0.66 -10.03 10.59 -17.60 -0.19 -10.22 16 17 C 0.61 8.37 8.50 -321.41 -2.73 5.63 16 18 N -0.49 -6.80 6.94 29.95 0.21 -6.60 16 19 H 0.47 7.24 6.26 -182.60 -1.14 6.10 16 20 N -0.29 -3.54 12.72 31.33 0.40 -3.14 16 21 C 0.29 2.75 7.87 -155.77 -1.23 1.53 16 22 C -0.12 -0.62 10.12 -39.20 -0.40 -1.01 16 23 C -0.04 -0.11 10.06 -39.52 -0.40 -0.51 16 24 C -0.18 -0.56 9.97 -39.87 -0.40 -0.96 16 25 C 0.14 0.82 10.93 -16.42 -0.18 0.64 16 26 N -0.44 -4.33 2.97 -63.46 -0.19 -4.52 16 27 C -0.14 -2.73 5.65 -26.61 -0.15 -2.88 16 28 C 0.15 3.34 6.52 -3.71 -0.02 3.32 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.70 7.57 -51.93 -0.39 1.31 16 35 H 0.40 5.92 8.70 -40.82 -0.36 5.56 16 36 H 0.16 0.45 8.06 -52.48 -0.42 0.02 16 37 H 0.15 -0.09 8.06 -52.48 -0.42 -0.51 16 38 H 0.16 0.00 8.06 -52.49 -0.42 -0.42 16 39 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -34.83 356.37 -12.76 -47.59 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.39 Total: 6.87 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: -6.81 Total: 14.19 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: 0.04 Total: -78.37 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.83 -12.76 -47.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609810751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.602 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds