Wall clock time and date at job start Tue Mar 31 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42102 * 108.57839 * 2 1 4 4 O 1.42095 * 108.58164 * 228.97116 * 2 1 3 5 5 C 1.81403 * 101.91977 * 114.48186 * 2 1 3 6 6 H 1.09000 * 109.46640 * 65.00401 * 5 2 1 7 7 C 1.52995 * 109.47163 * 305.00075 * 5 2 1 8 8 C 1.53005 * 109.46878 * 179.97438 * 7 5 2 9 9 C 1.52992 * 109.47251 * 60.00408 * 8 7 5 10 10 C 1.53004 * 109.46897 * 300.00026 * 9 8 7 11 11 C 1.52997 * 109.47126 * 184.99985 * 5 2 1 12 12 H 1.09006 * 109.47157 * 59.99950 * 11 5 2 13 13 N 1.46900 * 109.47306 * 300.00280 * 11 5 2 14 14 C 1.46902 * 111.00028 * 154.99869 * 13 11 5 15 15 C 1.53038 * 109.46026 * 155.00082 * 14 13 11 16 16 C 1.53190 * 109.31433 * 181.38561 * 15 14 13 17 17 N 1.46925 * 108.77574 * 305.36583 * 16 15 14 18 18 C 1.36934 * 120.62884 * 233.58328 * 17 16 15 19 19 H 1.08009 * 120.00073 * 152.32773 * 18 17 16 20 20 C 1.38808 * 120.00366 * 332.33028 * 18 17 16 21 21 N 1.31626 * 119.99889 * 342.63565 * 20 18 17 22 22 Si 1.86802 * 120.00371 * 162.36119 * 20 18 17 23 23 H 1.48504 * 109.47086 * 89.99765 * 22 20 18 24 24 H 1.48503 * 109.47264 * 210.00083 * 22 20 18 25 25 H 1.48501 * 109.46732 * 329.99841 * 22 20 18 26 26 C 1.46921 * 118.73965 * 53.85796 * 17 16 15 27 27 C 1.53039 * 109.46109 * 275.06910 * 14 13 11 28 28 H 1.08995 * 109.47325 * 305.51699 * 1 2 3 29 29 H 1.09002 * 109.46825 * 65.51368 * 1 2 3 30 30 H 1.08996 * 109.47010 * 185.50856 * 1 2 3 31 31 H 1.08994 * 109.47615 * 300.00201 * 7 5 2 32 32 H 1.09007 * 109.47034 * 59.99954 * 7 5 2 33 33 H 1.09006 * 109.46606 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47176 * 299.99856 * 8 7 5 35 35 H 1.09006 * 109.47305 * 59.99369 * 9 8 7 36 36 H 1.08992 * 109.47279 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47245 * 299.99997 * 10 9 8 38 38 H 1.09007 * 109.47084 * 179.97438 * 10 9 8 39 39 H 1.00899 * 111.00174 * 278.95306 * 13 11 5 40 40 H 1.08998 * 109.46018 * 35.02554 * 14 13 11 41 41 H 1.09004 * 109.49996 * 61.43198 * 15 14 13 42 42 H 1.09006 * 109.52513 * 301.35174 * 15 14 13 43 43 H 1.08997 * 109.58613 * 185.57515 * 16 15 14 44 44 H 1.09007 * 109.70413 * 65.21924 * 16 15 14 45 45 H 0.96999 * 119.99791 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.58547 * 65.92761 * 26 17 16 47 47 H 1.09001 * 109.59161 * 186.34960 * 26 17 16 48 48 H 1.08996 * 109.49657 * 298.56688 * 27 14 13 49 49 H 1.08996 * 109.49891 * 58.66417 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 1 1.8388 -1.7677 1.6344 7 6 1.4845 0.0622 2.7146 8 6 1.8000 -0.5586 4.0770 9 6 3.3112 -0.5284 4.3135 10 6 4.0155 -1.3261 3.2141 11 6 3.7000 -0.7049 1.8515 12 1 4.0499 0.3273 1.8322 13 7 4.3762 -1.4708 0.7959 14 6 5.7591 -1.0097 0.6146 15 6 6.6006 -2.1424 0.0221 16 6 8.0493 -1.6693 -0.1334 17 7 8.0603 -0.4316 -0.9251 18 6 8.8435 -0.3257 -2.0433 19 1 8.5528 0.3365 -2.8455 20 6 10.0110 -1.0695 -2.1461 21 7 10.5485 -1.6027 -1.0694 22 14 10.8152 -1.3201 -3.8134 23 1 11.7854 -0.2243 -4.0648 24 1 11.5259 -2.6240 -3.8292 25 1 9.7734 -1.3114 -4.8717 26 6 7.2197 0.6923 -0.4907 27 6 5.7760 0.1908 -0.3344 28 1 -0.3634 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3633 -1.0229 0.0986 31 1 1.8343 1.0943 2.6955 32 1 0.4077 0.0404 2.5464 33 1 1.2979 0.0095 4.8602 34 1 1.4498 -1.5906 4.0959 35 1 3.6615 0.5036 4.2946 36 1 3.5360 -0.9703 5.2842 37 1 3.6653 -2.3582 3.2329 38 1 5.0923 -1.3043 3.3823 39 1 4.3477 -2.4601 0.9923 40 1 6.1733 -0.7158 1.5790 41 1 6.2018 -2.4198 -0.9537 42 1 6.5692 -3.0057 0.6868 43 1 8.6311 -2.4358 -0.6453 44 1 8.4810 -1.4783 0.8492 45 1 11.3641 -2.1228 -1.1413 46 1 7.5828 1.0725 0.4642 47 1 7.2538 1.4846 -1.2385 48 1 5.3850 -0.1086 -1.3067 49 1 5.1576 0.9885 0.0771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611392674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:33 Heat of formation + Delta-G solvation = -59.999729 kcal Electronic energy + Delta-G solvation = -28483.413802 eV Core-core repulsion = 24765.684199 eV Total energy + Delta-G solvation = -3717.729604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.43777 -37.44529 -36.79254 -35.80501 -34.68507 -32.20816 -31.60417 -30.40700 -29.52575 -29.46837 -27.76628 -24.53449 -23.34945 -22.62151 -21.94822 -20.96834 -20.29661 -19.03244 -18.65847 -17.11985 -16.64343 -16.10508 -15.83380 -15.39901 -15.31436 -14.73147 -14.51397 -14.11550 -13.90283 -13.81022 -13.55112 -13.40747 -13.37202 -13.14868 -12.97345 -12.79306 -12.26465 -12.04852 -11.89561 -11.81322 -11.79729 -11.55330 -11.45185 -11.27449 -10.99711 -10.95123 -10.92897 -10.82025 -10.60373 -10.48886 -10.31720 -10.11229 -10.06412 -9.80863 -9.50502 -9.35317 -8.37975 -8.20028 -6.57449 -5.70489 -3.10980 0.01497 2.80944 3.44203 3.50786 3.55227 3.70490 3.81881 4.08206 4.29991 4.46794 4.58657 4.59417 4.63310 4.71570 4.81173 4.94644 4.99195 5.12370 5.14811 5.30141 5.43783 5.44986 5.47520 5.53767 5.57434 5.64308 5.72283 5.73992 5.78911 5.83173 5.92182 6.05502 6.07068 6.28416 6.44391 6.55922 6.67056 6.72836 6.76263 6.95405 7.16606 7.33800 7.46850 7.59784 7.73774 7.89318 8.54545 9.30870 9.94827 10.51802 11.38327 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.003451 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.027802 B = 8111.711193 C = 8997.100603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.431 3.569 3 O -0.938 6.938 4 O -0.906 6.906 5 C -0.558 4.558 6 H 0.134 0.866 7 C -0.112 4.112 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.139 4.139 11 C 0.103 3.897 12 H 0.095 0.905 13 N -0.688 5.688 14 C 0.099 3.901 15 C -0.141 4.141 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.247 4.247 19 H 0.065 0.935 20 C 0.000 4.000 21 N -0.906 5.906 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.146 3.854 27 C -0.127 4.127 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.344 0.656 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.015 0.985 45 H 0.252 0.748 46 H 0.015 0.985 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.822 0.308 11.832 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.822 4.822 2 S 2.611 3.389 3 O -0.935 6.935 4 O -0.903 6.903 5 C -0.667 4.667 6 H 0.152 0.848 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.157 4.157 10 C -0.179 4.179 11 C -0.009 4.009 12 H 0.113 0.887 13 N -0.319 5.319 14 C -0.010 4.010 15 C -0.180 4.180 16 C 0.048 3.952 17 N -0.314 5.314 18 C -0.377 4.377 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.551 5.551 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.019 3.981 27 C -0.167 4.167 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.163 0.837 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.033 0.967 45 H 0.062 0.938 46 H 0.033 0.967 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.351 0.892 10.607 24.756 hybrid contribution 0.182 -0.964 0.670 1.188 sum -22.169 -0.072 11.277 24.872 Atomic orbital electron populations 1.30532 1.29416 1.11027 1.11245 1.07896 0.77067 0.76174 0.77800 1.93569 1.78592 1.34885 1.86480 1.93623 1.77442 1.66438 1.52822 1.30229 1.04808 1.12007 1.19678 0.84819 1.21499 0.99334 0.99825 0.94387 1.21447 0.96568 1.01061 0.95787 1.21512 0.94925 1.00941 0.98366 1.22193 1.01098 0.99757 0.94832 1.21282 0.88773 1.00177 0.90648 0.88676 1.60772 1.18900 1.08444 1.43756 1.21490 0.85170 0.96816 0.97490 1.22404 0.99673 0.95536 1.00435 1.20729 0.90041 0.89930 0.94535 1.44062 1.48944 1.09047 1.29362 1.19214 1.00186 1.24528 0.93746 0.91688 1.25013 0.95923 1.01962 0.96907 1.70038 1.20265 1.38434 1.26356 0.86315 0.79126 0.77232 0.84243 1.21495 1.21648 1.20445 1.21003 0.88944 0.90992 0.97170 1.22199 0.98730 0.95885 0.99842 0.85736 0.85635 0.85715 0.89782 0.90697 0.91472 0.91701 0.91535 0.91769 0.91544 0.91045 0.83672 0.94224 0.91502 0.93681 0.89318 0.96693 0.93791 0.96745 0.92612 0.91199 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.43 10.01 101.05 1.01 -3.42 16 2 S 2.43 27.46 4.69 -107.50 -0.50 26.95 16 3 O -0.94 -13.87 18.06 -57.83 -1.04 -14.92 16 4 O -0.91 -14.13 17.26 -57.83 -1.00 -15.13 16 5 C -0.56 -4.92 2.32 -26.74 -0.06 -4.98 16 6 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 7 C -0.11 -0.74 4.91 -26.73 -0.13 -0.87 16 8 C -0.11 -0.69 5.92 -26.73 -0.16 -0.85 16 9 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 10 C -0.14 -1.33 5.16 -26.71 -0.14 -1.47 16 11 C 0.10 1.18 1.71 -67.69 -0.12 1.07 16 12 H 0.10 1.24 7.10 -51.93 -0.37 0.87 16 13 N -0.69 -9.85 4.91 -99.67 -0.49 -10.34 16 14 C 0.10 1.74 2.27 -67.67 -0.15 1.58 16 15 C -0.14 -2.77 5.36 -26.61 -0.14 -2.92 16 16 C 0.17 4.26 5.31 -3.71 -0.02 4.24 16 17 N -0.59 -15.51 2.99 -172.06 -0.51 -16.03 16 18 C -0.25 -7.07 9.58 -15.06 -0.14 -7.21 16 19 H 0.07 1.84 7.89 -52.48 -0.41 1.42 16 20 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 21 N -0.91 -26.84 11.19 55.49 0.62 -26.22 16 22 Si 0.90 22.35 29.59 -169.99 -5.03 17.32 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.15 3.30 6.54 -3.49 -0.02 3.28 16 27 C -0.13 -2.52 5.59 -26.39 -0.15 -2.67 16 28 H 0.12 0.54 6.77 -51.93 -0.35 0.19 16 29 H 0.13 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.30 6.39 -51.93 -0.33 -0.04 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16 39 H 0.34 4.43 8.07 -39.29 -0.32 4.11 16 40 H 0.04 0.69 7.11 -51.93 -0.37 0.32 16 41 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 48 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 49 H 0.05 0.92 7.41 -51.93 -0.38 0.53 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -35.28 379.91 -11.40 -46.68 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.70 Total: 1.35 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.47 Total: -15.41 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.38 Total: -52.58 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.04 Total: -30.05 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Atomic # 16 Polarization: 27.46 SS G_CDS: -0.50 Total: 26.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.28 -11.40 -46.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611392674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.315 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds