Wall clock time and date at job start Tue Mar 31 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42102 * 108.57839 * 2 1 4 4 O 1.42095 * 108.58164 * 228.97116 * 2 1 3 5 5 C 1.81403 * 101.91977 * 114.48186 * 2 1 3 6 6 H 1.09000 * 109.46640 * 65.00401 * 5 2 1 7 7 C 1.52995 * 109.47163 * 305.00075 * 5 2 1 8 8 C 1.53005 * 109.46878 * 179.97438 * 7 5 2 9 9 C 1.52992 * 109.47251 * 60.00408 * 8 7 5 10 10 C 1.53004 * 109.46897 * 300.00026 * 9 8 7 11 11 C 1.52997 * 109.47126 * 184.99985 * 5 2 1 12 12 H 1.09006 * 109.47157 * 59.99950 * 11 5 2 13 13 N 1.46900 * 109.47306 * 300.00280 * 11 5 2 14 14 C 1.46902 * 111.00028 * 154.99869 * 13 11 5 15 15 C 1.53038 * 109.46026 * 155.00082 * 14 13 11 16 16 C 1.53190 * 109.31433 * 181.38561 * 15 14 13 17 17 N 1.46925 * 108.77574 * 305.36583 * 16 15 14 18 18 C 1.36934 * 120.62884 * 233.58328 * 17 16 15 19 19 H 1.08009 * 120.00073 * 152.32773 * 18 17 16 20 20 C 1.38808 * 120.00366 * 332.33028 * 18 17 16 21 21 N 1.31626 * 119.99889 * 342.63565 * 20 18 17 22 22 Si 1.86802 * 120.00371 * 162.36119 * 20 18 17 23 23 H 1.48504 * 109.47086 * 89.99765 * 22 20 18 24 24 H 1.48503 * 109.47264 * 210.00083 * 22 20 18 25 25 H 1.48501 * 109.46732 * 329.99841 * 22 20 18 26 26 C 1.46921 * 118.73965 * 53.85796 * 17 16 15 27 27 C 1.53039 * 109.46109 * 275.06910 * 14 13 11 28 28 H 1.08995 * 109.47325 * 305.51699 * 1 2 3 29 29 H 1.09002 * 109.46825 * 65.51368 * 1 2 3 30 30 H 1.08996 * 109.47010 * 185.50856 * 1 2 3 31 31 H 1.08994 * 109.47615 * 300.00201 * 7 5 2 32 32 H 1.09007 * 109.47034 * 59.99954 * 7 5 2 33 33 H 1.09006 * 109.46606 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47176 * 299.99856 * 8 7 5 35 35 H 1.09006 * 109.47305 * 59.99369 * 9 8 7 36 36 H 1.08992 * 109.47279 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47245 * 299.99997 * 10 9 8 38 38 H 1.09007 * 109.47084 * 179.97438 * 10 9 8 39 39 H 1.00899 * 111.00174 * 278.95306 * 13 11 5 40 40 H 1.08998 * 109.46018 * 35.02554 * 14 13 11 41 41 H 1.09004 * 109.49996 * 61.43198 * 15 14 13 42 42 H 1.09006 * 109.52513 * 301.35174 * 15 14 13 43 43 H 1.08997 * 109.58613 * 185.57515 * 16 15 14 44 44 H 1.09007 * 109.70413 * 65.21924 * 16 15 14 45 45 H 0.96999 * 119.99791 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.58547 * 65.92761 * 26 17 16 47 47 H 1.09001 * 109.59161 * 186.34960 * 26 17 16 48 48 H 1.08996 * 109.49657 * 298.56688 * 27 14 13 49 49 H 1.08996 * 109.49891 * 58.66417 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 1 1.8388 -1.7677 1.6344 7 6 1.4845 0.0622 2.7146 8 6 1.8000 -0.5586 4.0770 9 6 3.3112 -0.5284 4.3135 10 6 4.0155 -1.3261 3.2141 11 6 3.7000 -0.7049 1.8515 12 1 4.0499 0.3273 1.8322 13 7 4.3762 -1.4708 0.7959 14 6 5.7591 -1.0097 0.6146 15 6 6.6006 -2.1424 0.0221 16 6 8.0493 -1.6693 -0.1334 17 7 8.0603 -0.4316 -0.9251 18 6 8.8435 -0.3257 -2.0433 19 1 8.5528 0.3365 -2.8455 20 6 10.0110 -1.0695 -2.1461 21 7 10.5485 -1.6027 -1.0694 22 14 10.8152 -1.3201 -3.8134 23 1 11.7854 -0.2243 -4.0648 24 1 11.5259 -2.6240 -3.8292 25 1 9.7734 -1.3114 -4.8717 26 6 7.2197 0.6923 -0.4907 27 6 5.7760 0.1908 -0.3344 28 1 -0.3634 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3633 -1.0229 0.0986 31 1 1.8343 1.0943 2.6955 32 1 0.4077 0.0404 2.5464 33 1 1.2979 0.0095 4.8602 34 1 1.4498 -1.5906 4.0959 35 1 3.6615 0.5036 4.2946 36 1 3.5360 -0.9703 5.2842 37 1 3.6653 -2.3582 3.2329 38 1 5.0923 -1.3043 3.3823 39 1 4.3477 -2.4601 0.9923 40 1 6.1733 -0.7158 1.5790 41 1 6.2018 -2.4198 -0.9537 42 1 6.5692 -3.0057 0.6868 43 1 8.6311 -2.4358 -0.6453 44 1 8.4810 -1.4783 0.8492 45 1 11.3641 -2.1228 -1.1413 46 1 7.5828 1.0725 0.4642 47 1 7.2538 1.4846 -1.2385 48 1 5.3850 -0.1086 -1.3067 49 1 5.1576 0.9885 0.0771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611392674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:32 Heat of formation + Delta-G solvation = -86.022996 kcal Electronic energy + Delta-G solvation = -28484.542256 eV Core-core repulsion = 24765.684199 eV Total energy + Delta-G solvation = -3718.858057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43455 -38.91055 -37.76356 -36.76760 -36.13337 -33.96712 -32.25380 -32.01906 -31.31251 -30.04615 -29.04706 -26.44488 -24.12376 -23.97819 -23.48894 -22.34743 -21.05116 -20.69476 -19.57200 -18.74845 -17.84844 -16.98535 -16.94950 -16.65683 -16.43855 -16.20589 -15.71347 -15.34893 -15.23158 -14.96280 -14.72821 -14.61113 -14.48415 -14.13817 -13.90249 -13.81965 -13.63710 -13.42084 -13.10587 -12.93802 -12.85693 -12.77810 -12.69294 -12.55051 -12.44262 -12.27769 -12.15753 -12.03770 -12.00140 -11.84221 -11.69454 -11.51294 -11.37836 -11.24271 -11.09600 -10.82376 -10.54154 -9.35608 -8.70542 -7.89241 -5.33709 -0.76576 1.45067 1.46678 1.57634 2.06494 2.50652 2.89223 2.97087 3.24876 3.30148 3.59629 3.65953 3.78245 3.88603 4.01051 4.07158 4.12518 4.15096 4.20178 4.31945 4.37246 4.37467 4.42350 4.50777 4.51814 4.65259 4.77680 4.81230 4.86819 4.90683 4.95678 4.98564 5.03863 5.05556 5.14626 5.20575 5.21761 5.27274 5.32278 5.37929 5.50088 5.50824 5.63078 5.71515 6.04954 6.37890 6.48961 7.13656 7.83920 8.36378 9.17416 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.003451 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.027802 B = 8111.711193 C = 8997.100603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.403 3.597 3 O -0.991 6.991 4 O -0.966 6.966 5 C -0.539 4.539 6 H 0.164 0.836 7 C -0.117 4.117 8 C -0.107 4.107 9 C -0.121 4.121 10 C -0.134 4.134 11 C 0.096 3.904 12 H 0.073 0.927 13 N -0.692 5.692 14 C 0.112 3.888 15 C -0.126 4.126 16 C 0.180 3.820 17 N -0.610 5.610 18 C -0.268 4.268 19 H 0.060 0.940 20 C -0.047 4.047 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.143 3.857 27 C -0.113 4.113 28 H 0.156 0.844 29 H 0.130 0.870 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.355 0.645 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.000 1.000 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.049 0.951 48 H 0.045 0.955 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.115 -0.584 13.447 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.592 3.408 3 O -0.988 6.988 4 O -0.963 6.963 5 C -0.651 4.651 6 H 0.182 0.818 7 C -0.155 4.155 8 C -0.145 4.145 9 C -0.160 4.160 10 C -0.174 4.174 11 C -0.015 4.015 12 H 0.091 0.909 13 N -0.323 5.323 14 C 0.002 3.998 15 C -0.166 4.166 16 C 0.054 3.946 17 N -0.333 5.333 18 C -0.398 4.398 19 H 0.078 0.922 20 C -0.243 4.243 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.200 1.200 26 C 0.017 3.983 27 C -0.153 4.153 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.174 0.826 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.175 0.825 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.018 0.982 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.629 0.021 12.209 28.388 hybrid contribution 1.121 -0.641 0.249 1.315 sum -24.508 -0.621 12.458 27.499 Atomic orbital electron populations 1.30260 1.22902 1.13904 1.13083 1.08106 0.79643 0.74787 0.78305 1.93506 1.81000 1.36940 1.87342 1.93560 1.80139 1.67050 1.55572 1.30047 1.02847 1.13902 1.18289 0.81806 1.21676 1.01340 0.98857 0.93632 1.21467 0.94995 1.02290 0.95773 1.21546 0.96369 1.00012 0.98030 1.22137 1.00357 1.00797 0.94095 1.21369 0.90458 0.98689 0.90944 0.90868 1.60629 1.16500 1.09396 1.45822 1.21159 0.87106 0.94914 0.96587 1.22163 0.96632 0.97256 1.00533 1.20567 0.92546 0.88638 0.92840 1.44314 1.49211 1.10538 1.29278 1.19496 1.00839 1.24858 0.94630 0.92194 1.25767 0.96453 1.01760 1.00301 1.70180 1.20555 1.38952 1.28187 0.85279 0.78086 0.77085 0.80007 1.20886 1.21343 1.19978 1.21100 0.90098 0.90221 0.96896 1.21990 0.96559 0.97369 0.99378 0.82590 0.85113 0.82627 0.90757 0.86817 0.89755 0.90148 0.92620 0.90789 0.89921 0.92869 0.82479 0.93913 0.93144 0.90623 0.92474 0.98219 0.93969 0.96466 0.93222 0.93594 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.85 10.01 113.37 1.14 -4.72 16 2 S 2.40 51.86 4.69 -56.49 -0.27 51.60 16 3 O -0.99 -29.92 18.06 -127.37 -2.30 -32.22 16 4 O -0.97 -30.54 17.26 -127.37 -2.20 -32.73 16 5 C -0.54 -8.02 2.32 30.59 0.07 -7.95 16 6 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 7 C -0.12 -1.08 4.91 30.59 0.15 -0.93 16 8 C -0.11 -0.87 5.92 30.59 0.18 -0.69 16 9 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 10 C -0.13 -2.31 5.16 30.61 0.16 -2.15 16 11 C 0.10 2.11 1.71 44.93 0.08 2.18 16 12 H 0.07 1.93 7.10 -2.38 -0.02 1.91 16 13 N -0.69 -19.49 4.91 -469.26 -2.30 -21.79 16 14 C 0.11 3.99 2.27 44.94 0.10 4.10 16 15 C -0.13 -5.07 5.36 30.67 0.16 -4.91 16 16 C 0.18 9.18 5.31 86.36 0.46 9.64 16 17 N -0.61 -33.36 2.99 -698.26 -2.09 -35.45 16 18 C -0.27 -15.90 9.58 84.03 0.81 -15.09 16 19 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 20 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 21 N -0.93 -56.85 11.19 21.65 0.24 -56.61 16 22 Si 0.97 46.98 29.59 68.60 2.03 49.01 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 26 C 0.14 6.78 6.54 86.51 0.57 7.34 16 27 C -0.11 -4.70 5.59 30.82 0.17 -4.53 16 28 H 0.16 0.48 6.77 -2.39 -0.02 0.46 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.16 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.21 6.39 -2.38 -0.02 0.19 16 33 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.16 8.13 -2.39 -0.02 1.15 16 38 H 0.05 1.11 7.43 -2.38 -0.02 1.09 16 39 H 0.35 8.62 8.07 -89.69 -0.72 7.90 16 40 H 0.04 1.51 7.11 -2.39 -0.02 1.50 16 41 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.08 2.55 8.10 -2.38 -0.02 2.53 16 43 H 0.06 3.26 6.04 -2.39 -0.01 3.24 16 44 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 48 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 49 H 0.06 2.35 7.41 -2.39 -0.02 2.34 16 Total: -1.00 -81.97 379.91 -2.05 -84.02 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.20 Total: 15.65 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.64 Total: -21.47 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.15 Total: -113.85 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -4.50 Total: -64.95 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -0.27 Total: 51.60 kcal Total: -81.97 -2.05 -84.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611392674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.002 kcal (2) G-P(sol) polarization free energy of solvation -81.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds