Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28775 * 125.86962 * 2 1 4 4 N 1.28689 * 111.75567 * 179.97438 * 3 2 1 5 5 C 1.34396 * 109.15407 * 0.02562 * 4 3 2 6 6 C 1.37218 * 125.86407 * 180.02562 * 2 1 3 7 7 N 1.32205 * 134.67703 * 359.97438 * 6 2 1 8 8 C 1.31577 * 121.86629 * 180.02562 * 7 6 2 9 9 C 1.38624 * 121.63971 * 359.97438 * 8 7 6 10 10 C 1.39451 * 119.36933 * 0.02562 * 9 8 7 11 11 C 1.47876 * 121.11162 * 179.72934 * 10 9 8 12 12 O 1.21547 * 120.00075 * 179.97438 * 11 10 9 13 13 N 1.34776 * 119.99952 * 359.97438 * 11 10 9 14 14 C 1.46508 * 119.99940 * 180.02562 * 13 11 10 15 15 C 1.53039 * 109.45739 * 275.06782 * 14 13 11 16 16 C 1.53193 * 109.30800 * 178.61269 * 15 14 13 17 17 N 1.46927 * 108.77608 * 54.63737 * 16 15 14 18 18 C 1.36944 * 120.63214 * 126.40692 * 17 16 15 19 19 H 1.07992 * 120.00125 * 331.83655 * 18 17 16 20 20 C 1.38815 * 119.99793 * 151.82798 * 18 17 16 21 21 N 1.31620 * 119.99783 * 343.07396 * 20 18 17 22 22 Si 1.86795 * 119.99768 * 163.07329 * 20 18 17 23 23 H 1.48500 * 109.47070 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47173 * 120.00236 * 22 20 18 25 25 H 1.48505 * 109.47109 * 239.99820 * 22 20 18 26 26 C 1.46922 * 118.73939 * 306.38940 * 17 16 15 27 27 C 1.53043 * 109.45844 * 154.99862 * 14 13 11 28 28 H 1.09005 * 109.47107 * 270.00137 * 1 2 3 29 29 H 1.09004 * 109.47194 * 29.99676 * 1 2 3 30 30 H 1.08997 * 109.47750 * 149.99865 * 1 2 3 31 31 H 1.08001 * 119.18126 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.31208 * 180.02562 * 9 8 7 33 33 H 0.96999 * 119.99935 * 359.97438 * 13 11 10 34 34 H 1.08995 * 109.45649 * 35.02961 * 14 13 11 35 35 H 1.08994 * 109.50163 * 298.56620 * 15 14 13 36 36 H 1.08995 * 109.49861 * 58.66498 * 15 14 13 37 37 H 1.08999 * 109.58850 * 294.85175 * 16 15 14 38 38 H 1.09003 * 109.70156 * 174.48928 * 16 15 14 39 39 H 0.97005 * 119.99548 * 180.02562 * 21 20 18 40 40 H 1.09002 * 109.58735 * 293.81979 * 26 17 16 41 41 H 1.08997 * 109.70912 * 173.46413 * 26 17 16 42 42 H 1.09001 * 109.49873 * 301.34086 * 27 14 13 43 43 H 1.09004 * 109.49630 * 61.40167 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2196 1.0435 0.0000 4 7 3.4676 0.7297 0.0005 5 6 3.5857 -0.6090 0.0004 6 6 2.2689 -1.1120 -0.0005 7 7 2.0517 -2.4161 -0.0007 8 6 3.0398 -3.2849 -0.0007 9 6 4.3652 -2.8788 -0.0011 10 6 4.6631 -1.5165 -0.0009 11 6 6.0631 -1.0405 0.0047 12 8 6.2997 0.1517 0.0043 13 7 7.0768 -1.9287 0.0103 14 6 8.4639 -1.4571 0.0164 15 6 8.9123 -1.1736 -1.4191 16 6 10.3511 -0.6479 -1.4059 17 7 11.1991 -1.6089 -0.6875 18 6 12.3322 -2.1113 -1.2699 19 1 12.3951 -2.1952 -2.3447 20 6 13.3998 -2.5125 -0.4787 21 7 13.4756 -2.1166 0.7743 22 14 14.7289 -3.6142 -1.1923 23 1 14.4124 -3.9161 -2.6114 24 1 16.0405 -2.9223 -1.1134 25 1 14.7900 -4.8806 -0.4190 26 6 10.8087 -2.0203 0.6678 27 6 9.3647 -2.5306 0.6315 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 2.8126 -4.3408 -0.0012 32 1 5.1595 -3.6106 -0.0015 33 1 6.8880 -2.8801 0.0110 34 1 8.5340 -0.5429 0.6058 35 1 8.8661 -2.0928 -2.0030 36 1 8.2559 -0.4259 -1.8644 37 1 10.3830 0.3170 -0.9000 38 1 10.7110 -0.5364 -2.4287 39 1 14.2219 -2.3967 1.3270 40 1 10.8779 -1.1673 1.3429 41 1 11.4685 -2.8154 1.0150 42 1 9.0302 -2.7489 1.6457 43 1 9.3138 -3.4373 0.0286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619747318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = 99.868703 kcal Electronic energy + Delta-G solvation = -27607.218439 eV Core-core repulsion = 23689.729707 eV Total energy + Delta-G solvation = -3917.488732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.48711 -41.26953 -39.89900 -38.87986 -36.18420 -36.01304 -34.27243 -33.27897 -31.93489 -31.71621 -31.06219 -28.92022 -27.34109 -26.37232 -24.81056 -24.27518 -23.86043 -22.92456 -21.48611 -20.91114 -19.94796 -19.11077 -18.63246 -18.38225 -18.10494 -17.14271 -16.71674 -16.41861 -16.09759 -15.73942 -15.53911 -15.34500 -15.14343 -14.78989 -14.67209 -14.25544 -14.17301 -14.08921 -14.05456 -13.68793 -13.41315 -13.20805 -13.01131 -12.62758 -12.59754 -12.51105 -12.23442 -12.14787 -11.98159 -11.86298 -11.57777 -11.44084 -11.26572 -10.61461 -10.55493 -10.33267 -10.21294 -9.96965 -8.69831 -7.86467 -5.32359 -1.06116 -0.18114 0.91267 0.99321 1.49245 1.51395 1.62155 1.74329 1.88733 2.53459 2.55574 2.59883 3.16566 3.20206 3.29580 3.40653 3.63907 3.67425 3.87557 4.02259 4.07036 4.24404 4.25315 4.33237 4.38534 4.47826 4.55354 4.59817 4.65526 4.75186 4.82409 4.87082 5.02806 5.06422 5.10619 5.16638 5.30142 5.37821 5.47561 5.48847 5.66707 5.73743 6.40283 6.41853 6.49702 7.05743 7.15329 7.15976 7.84996 8.38161 9.20832 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.002324 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.386691 B =12044.684066 C =12467.648045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.298 5.298 3 N -0.027 5.027 4 N -0.272 5.272 5 C -0.028 4.028 6 C 0.197 3.803 7 N -0.458 5.458 8 C 0.174 3.826 9 C -0.106 4.106 10 C -0.042 4.042 11 C 0.548 3.452 12 O -0.557 6.557 13 N -0.694 5.694 14 C 0.163 3.837 15 C -0.124 4.124 16 C 0.144 3.856 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.068 0.932 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.297 1.297 25 H -0.286 1.286 26 C 0.177 3.823 27 C -0.126 4.126 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.239 0.761 32 H 0.202 0.798 33 H 0.418 0.582 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.003 0.997 38 H 0.058 0.942 39 H 0.251 0.749 40 H -0.009 1.009 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.125 -8.521 -0.942 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.101 5.101 3 N -0.008 5.008 4 N -0.145 5.145 5 C -0.159 4.159 6 C -0.045 4.045 7 N -0.171 5.171 8 C 0.000 4.000 9 C -0.129 4.129 10 C -0.058 4.058 11 C 0.334 3.666 12 O -0.435 6.435 13 N -0.347 5.347 14 C 0.058 3.942 15 C -0.164 4.164 16 C 0.018 3.982 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.086 0.914 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.212 1.212 26 C 0.051 3.949 27 C -0.166 4.166 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.255 0.745 32 H 0.218 0.782 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.009 0.991 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -29.800 -6.283 -0.848 30.467 hybrid contribution 1.756 -0.727 -0.036 1.901 sum -28.044 -7.010 -0.884 28.921 Atomic orbital electron populations 1.22784 0.68409 1.07883 1.06941 1.47496 1.10616 1.01265 1.50679 1.78156 0.96997 1.12176 1.13512 1.75486 1.07734 1.12758 1.18541 1.20546 0.95170 0.92085 1.08095 1.19952 0.87669 0.90407 1.06438 1.66459 1.38712 0.97903 1.14063 1.23870 0.85777 1.00770 0.89554 1.22998 1.01181 0.92928 0.95819 1.19703 0.90702 0.93747 1.01631 1.18351 0.85251 0.86020 0.76982 1.90858 1.85202 1.17755 1.49674 1.45839 1.04880 1.10282 1.73708 1.20710 0.79406 0.97623 0.96448 1.22167 0.96373 1.01342 0.96513 1.20955 0.90322 0.90897 0.96056 1.44373 1.25254 1.48439 1.15146 1.19549 0.92368 1.35285 0.91882 0.91438 1.25835 0.99264 1.02499 0.97023 1.70199 1.32275 1.47075 1.08695 0.85178 0.78429 0.78323 0.78302 1.19016 1.22404 1.21236 1.20587 0.92198 0.97036 0.85115 1.22260 0.95346 0.97881 1.01102 0.87190 0.86110 0.86101 0.74484 0.78150 0.74350 0.92699 0.90702 0.92729 0.97914 0.92390 0.94028 0.99093 0.91576 0.90062 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.41 127.77 1.46 2.06 16 2 N -0.30 -6.11 3.79 -366.60 -1.39 -7.50 16 3 N -0.03 -0.77 13.07 37.02 0.48 -0.28 16 4 N -0.27 -9.45 11.92 -51.94 -0.62 -10.07 16 5 C -0.03 -0.81 6.97 40.06 0.28 -0.53 16 6 C 0.20 4.35 8.08 134.17 1.08 5.44 16 7 N -0.46 -6.98 10.35 -193.10 -2.00 -8.98 16 8 C 0.17 1.36 11.14 84.82 0.94 2.30 16 9 C -0.11 -1.13 9.61 22.65 0.22 -0.91 16 10 C -0.04 -0.99 5.92 -19.79 -0.12 -1.10 16 11 C 0.55 16.58 7.76 86.80 0.67 17.25 16 12 O -0.56 -23.19 15.93 -3.86 -0.06 -23.25 16 13 N -0.69 -17.15 5.04 -445.24 -2.24 -19.39 16 14 C 0.16 5.40 2.41 45.02 0.11 5.50 16 15 C -0.12 -4.40 5.65 30.67 0.17 -4.23 16 16 C 0.14 6.30 6.52 86.36 0.56 6.86 16 17 N -0.61 -30.47 2.99 -699.10 -2.09 -32.56 16 18 C -0.26 -14.16 9.58 84.03 0.81 -13.36 16 19 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 20 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 21 N -0.94 -54.88 11.19 21.65 0.24 -54.64 16 22 Si 0.97 44.00 29.59 68.60 2.03 46.03 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 C 0.18 8.28 5.30 86.36 0.46 8.74 16 27 C -0.13 -4.21 5.55 30.67 0.17 -4.04 16 28 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.24 -0.83 8.06 -2.91 -0.02 -0.85 16 32 H 0.20 0.30 6.53 -2.91 -0.02 0.28 16 33 H 0.42 6.27 6.75 -92.71 -0.63 5.65 16 34 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 38 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 39 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.07 3.45 6.07 -2.39 -0.01 3.43 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -86.55 358.41 2.02 -84.53 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.43 Total: 4.53 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 7.24 Total: 21.60 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -7.62 Total: -133.44 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -86.55 2.02 -84.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619747318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.396 kcal (2) G-P(sol) polarization free energy of solvation -86.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds