Wall clock time and date at job start Tue Mar 31 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00142 * 2 1 4 4 C 1.50696 * 109.46948 * 293.94890 * 3 2 1 5 5 H 1.08006 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00265 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99702 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00277 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47165 * 89.99471 * 8 6 4 10 10 H 1.48494 * 109.46798 * 209.99867 * 8 6 4 11 11 H 1.48503 * 109.46930 * 329.99910 * 8 6 4 12 12 C 1.46905 * 110.99691 * 123.95151 * 2 1 3 13 13 C 1.50692 * 109.47421 * 66.04652 * 12 2 1 14 14 O 1.21285 * 119.99700 * 0.02562 * 13 12 2 15 15 N 1.34772 * 120.00624 * 179.97438 * 13 12 2 16 16 C 1.46498 * 120.00681 * 179.97438 * 15 13 12 17 17 C 1.50692 * 109.47372 * 180.02562 * 16 15 13 18 18 C 1.38334 * 119.94577 * 270.02310 * 17 16 15 19 19 C 1.38293 * 120.24319 * 179.97438 * 18 17 16 20 20 C 1.38052 * 120.11340 * 0.02562 * 19 18 17 21 21 C 1.39285 * 119.88073 * 359.97438 * 20 19 18 22 22 C 1.48467 * 120.11394 * 180.02562 * 21 20 19 23 23 N 1.34047 * 126.66918 * 179.68907 * 22 21 20 24 24 N 1.28987 * 107.26543 * 179.83549 * 23 22 21 25 25 N 1.28729 * 108.94255 * 0.43596 * 24 23 22 26 26 H 0.97000 * 125.33735 * 179.74524 * 25 24 23 27 27 N 1.28868 * 109.31909 * 359.71969 * 25 24 23 28 28 C 1.38007 * 119.94027 * 90.00583 * 17 16 15 29 29 H 1.09005 * 109.47147 * 296.04754 * 1 2 3 30 30 H 1.08997 * 109.47139 * 56.04761 * 1 2 3 31 31 H 1.08994 * 109.46993 * 176.04772 * 1 2 3 32 32 H 1.08996 * 109.47789 * 53.95345 * 3 2 1 33 33 H 1.09006 * 109.46882 * 173.95321 * 3 2 1 34 34 H 0.96994 * 120.00009 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47544 * 306.04012 * 12 2 1 36 36 H 1.09011 * 109.46998 * 186.04488 * 12 2 1 37 37 H 0.97010 * 119.99555 * 0.02562 * 15 13 12 38 38 H 1.09001 * 109.46532 * 60.00387 * 16 15 13 39 39 H 1.09002 * 109.47390 * 300.00519 * 16 15 13 40 40 H 1.08000 * 119.88112 * 0.02562 * 18 17 16 41 41 H 1.08000 * 119.94440 * 180.02562 * 19 18 17 42 42 H 1.08001 * 120.05965 * 180.27537 * 20 19 18 43 43 H 1.08001 * 120.05687 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5113 -2.0486 6 6 2.0278 3.3490 -1.5290 7 7 2.7129 4.0015 -0.6155 8 14 1.5829 4.1868 -3.1383 9 1 0.2710 4.8677 -2.9957 10 1 2.6255 5.1873 -3.4802 11 1 1.4985 3.1710 -4.2183 12 6 1.9954 -0.7660 1.1377 13 6 1.6369 -2.2203 0.9731 14 8 1.0054 -2.5832 0.0032 15 7 2.0187 -3.1181 1.9029 16 6 1.6697 -4.5319 1.7432 17 6 2.2098 -5.3176 2.9101 18 6 3.4799 -5.8621 2.8474 19 6 3.9819 -6.5838 3.9150 20 6 3.2166 -6.7649 5.0496 21 6 1.9371 -6.2189 5.1180 22 6 1.1098 -6.4100 6.3360 23 7 -0.1284 -5.9406 6.5444 24 7 -0.4919 -6.3284 7.7197 25 7 0.4648 -7.0065 8.2506 26 1 0.4455 -7.4075 9.1336 27 7 1.4521 -7.0694 7.4247 28 6 1.4365 -5.4924 4.0398 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 1.5612 1.9274 0.8308 33 1 3.0798 1.3443 0.1083 34 1 2.9881 4.9173 -0.7778 35 1 1.5611 -0.3872 2.0629 36 1 3.0797 -0.6611 1.1757 37 1 2.5241 -2.8279 2.6785 38 1 2.1034 -4.9107 0.8177 39 1 0.5854 -4.6365 1.7058 40 1 4.0821 -5.7224 1.9618 41 1 4.9743 -7.0064 3.8610 42 1 3.6111 -7.3249 5.8845 43 1 0.4453 -5.0663 4.0880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821597948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:50 Heat of formation + Delta-G solvation = 124.538651 kcal Electronic energy + Delta-G solvation = -26174.795434 eV Core-core repulsion = 22258.376471 eV Total energy + Delta-G solvation = -3916.418963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.86953 -40.06218 -39.15365 -36.09193 -35.08691 -34.68152 -33.82626 -32.46287 -31.69109 -31.01629 -28.49891 -26.97614 -26.02263 -25.06280 -24.88463 -23.83742 -22.44422 -21.29359 -20.76838 -19.91570 -19.60945 -17.55424 -17.43737 -16.72163 -16.16017 -16.05688 -15.87427 -15.55763 -15.11857 -14.58732 -14.56025 -14.05375 -13.93770 -13.69824 -13.62102 -13.37287 -13.06875 -12.81748 -12.58087 -12.33031 -11.83443 -11.78726 -11.77241 -11.66465 -11.39742 -11.34562 -11.31477 -10.97180 -10.78072 -10.67503 -10.47896 -9.93900 -9.56204 -9.29855 -9.14771 -8.96269 -8.90759 -8.39915 -7.18012 -5.99270 -3.99536 0.27455 0.76953 0.87256 1.80975 1.92404 3.02286 3.15890 3.23939 3.36297 3.41918 3.47897 3.61778 3.75976 4.33207 4.47854 4.50833 4.66051 4.74942 4.92126 4.98647 5.11184 5.11743 5.18846 5.30128 5.37061 5.45623 5.59107 5.69777 5.81124 5.87384 5.88935 5.97232 5.99841 6.16503 6.36322 6.42594 6.45642 6.54555 6.97483 7.27556 7.34992 7.63143 7.72446 7.85855 8.09947 8.23406 8.53447 8.62173 9.08646 9.64347 11.11811 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.001871 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.913166 B =14958.348745 C =15501.946115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.523 5.523 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.037 3.963 13 C 0.516 3.484 14 O -0.517 6.517 15 N -0.738 5.738 16 C 0.163 3.837 17 C -0.105 4.105 18 C -0.077 4.077 19 C -0.123 4.123 20 C -0.074 4.074 21 C -0.023 4.023 22 C 0.220 3.780 23 N -0.265 5.265 24 N -0.047 5.047 25 N -0.228 5.228 26 H 0.476 0.524 27 N -0.295 5.295 28 C -0.057 4.057 29 H 0.004 0.996 30 H 0.073 0.927 31 H 0.064 0.936 32 H -0.008 1.008 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.399 0.601 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 -26.177 19.295 32.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.248 5.248 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.095 4.095 13 C 0.302 3.698 14 O -0.391 6.391 15 N -0.393 5.393 16 C 0.039 3.961 17 C -0.105 4.105 18 C -0.097 4.097 19 C -0.141 4.141 20 C -0.095 4.095 21 C -0.027 4.027 22 C -0.059 4.059 23 N -0.138 5.138 24 N -0.042 5.042 25 N -0.074 5.074 26 H 0.330 0.670 27 N -0.147 5.147 28 C -0.077 4.077 29 H 0.023 0.977 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.010 0.990 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.233 0.767 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.637 -26.397 18.529 32.258 hybrid contribution 0.236 0.734 0.860 1.155 sum 0.874 -25.663 19.389 32.176 Atomic orbital electron populations 1.22364 0.88050 1.01188 0.99942 1.61856 1.07845 1.17239 1.37873 1.19789 0.95346 0.81168 0.96919 1.21168 1.34589 0.96846 1.01651 0.91666 1.24991 0.95333 0.97321 0.97086 1.69955 1.38546 1.11432 1.34127 0.86471 0.77926 0.79160 0.83732 1.20760 1.21306 1.19703 1.21947 1.01988 0.90288 0.95237 1.21021 0.78648 0.88242 0.81850 1.90655 1.38380 1.80479 1.29618 1.46128 1.59564 1.07013 1.26591 1.20106 1.00477 0.80418 0.95066 1.19866 0.94843 1.00201 0.95633 1.21363 0.94567 0.94954 0.98793 1.21110 1.00294 0.99631 0.93068 1.21206 0.92272 0.97544 0.98458 1.17187 0.93191 1.02830 0.89443 1.23708 0.91562 0.96360 0.94295 1.76139 1.11033 1.19856 1.06809 1.78958 1.14598 1.06952 1.03717 1.47743 1.07211 1.35097 1.17332 0.66996 1.74903 1.14939 1.23065 1.01769 1.21146 1.00274 0.95335 0.90967 0.97710 0.90779 0.91693 0.99007 0.95168 0.92981 0.93075 0.88494 0.76699 0.90402 0.90563 0.84961 0.84913 0.84928 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.03 60.06 0.54 1.25 16 2 N -0.52 -11.97 4.49 -245.83 -1.10 -13.07 16 3 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 4 C -0.50 -14.53 8.46 -34.44 -0.29 -14.82 16 5 H 0.07 1.89 7.12 -52.48 -0.37 1.52 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.04 0.66 5.45 -4.98 -0.03 0.63 16 13 C 0.52 8.43 7.55 -10.99 -0.08 8.35 16 14 O -0.52 -10.42 14.31 5.55 0.08 -10.34 16 15 N -0.74 -8.58 5.55 -61.48 -0.34 -8.92 16 16 C 0.16 1.65 5.79 -5.20 -0.03 1.62 16 17 C -0.10 -0.86 5.24 -104.67 -0.55 -1.41 16 18 C -0.08 -0.54 9.69 -39.53 -0.38 -0.92 16 19 C -0.12 -0.75 10.03 -39.63 -0.40 -1.15 16 20 C -0.07 -0.52 9.70 -39.26 -0.38 -0.90 16 21 C -0.02 -0.20 5.88 -104.89 -0.62 -0.82 16 22 C 0.22 2.08 7.94 -156.31 -1.24 0.84 16 23 N -0.27 -2.81 12.23 32.16 0.39 -2.42 16 24 N -0.05 -0.41 13.47 60.35 0.81 0.40 16 25 N -0.23 -1.28 7.90 60.35 0.48 -0.80 16 26 H 0.48 0.33 8.96 -340.37 -3.05 -2.72 16 27 N -0.30 -2.28 12.08 32.17 0.39 -1.89 16 28 C -0.06 -0.49 9.35 -39.26 -0.37 -0.86 16 29 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 31 H 0.06 1.35 5.88 -51.93 -0.31 1.05 16 32 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 33 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 36 H 0.10 1.59 7.93 -51.92 -0.41 1.18 16 37 H 0.40 3.73 8.46 -40.82 -0.35 3.38 16 38 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.76 7.88 -52.49 -0.41 0.34 16 43 H 0.14 1.25 7.89 -52.49 -0.41 0.84 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -36.25 372.28 -10.08 -46.33 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -8.16 Total: -4.11 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.94 Total: -1.66 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 1.36 Total: -52.88 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.25 -10.08 -46.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.870 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds