Wall clock time and date at job start Tue Mar 31 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48505 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47266 * 299.99735 * 3 2 1 6 6 H 1.48501 * 109.47150 * 59.99961 * 3 2 1 7 7 C 1.38814 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00511 * 163.07310 * 7 2 1 9 9 N 1.36932 * 119.99714 * 343.07031 * 7 2 1 10 10 C 1.46935 * 120.63472 * 331.84911 * 9 7 2 11 11 C 1.53190 * 108.77862 * 233.58932 * 10 9 7 12 12 C 1.53043 * 109.31171 * 305.36383 * 11 10 9 13 13 C 1.52994 * 109.45907 * 181.38810 * 12 11 10 14 14 N 1.46502 * 109.46979 * 174.99832 * 13 12 11 15 15 C 1.38779 * 120.00163 * 179.97438 * 14 13 12 16 16 N 1.32583 * 120.15268 * 0.30020 * 15 14 13 17 17 C 1.32267 * 119.99874 * 180.26793 * 16 15 14 18 18 C 1.38287 * 120.31219 * 359.45386 * 17 16 15 19 19 N 1.32111 * 120.31607 * 0.24455 * 18 17 16 20 20 C 1.32749 * 119.99288 * 0.02963 * 19 18 17 21 21 C 1.48311 * 120.15456 * 180.02562 * 20 19 18 22 22 N 1.34095 * 126.68127 * 180.02562 * 21 20 19 23 23 N 1.28988 * 107.26324 * 179.97438 * 22 21 20 24 24 N 1.28734 * 108.95793 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.33157 * 179.97438 * 24 23 22 26 26 N 1.28871 * 109.33045 * 359.72039 * 24 23 22 27 27 C 1.53036 * 109.53945 * 61.36209 * 12 11 10 28 28 C 1.46927 * 120.62969 * 151.82774 * 9 7 2 29 29 H 0.96994 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58477 * 113.79539 * 10 9 7 31 31 H 1.09003 * 109.69519 * 353.44543 * 10 9 7 32 32 H 1.08998 * 109.49753 * 185.41190 * 11 10 9 33 33 H 1.09006 * 109.52308 * 65.32712 * 11 10 9 34 34 H 1.09002 * 109.45915 * 301.35971 * 12 11 10 35 35 H 1.08996 * 109.47797 * 54.99624 * 13 12 11 36 36 H 1.09007 * 109.47192 * 294.99176 * 13 12 11 37 37 H 0.97001 * 119.99984 * 359.97438 * 14 13 12 38 38 H 1.07999 * 119.84445 * 179.72147 * 17 16 15 39 39 H 1.08007 * 119.84224 * 180.27660 * 18 17 16 40 40 H 1.09007 * 109.49733 * 58.59205 * 27 12 11 41 41 H 1.08999 * 109.50077 * 178.68336 * 27 12 11 42 42 H 1.09003 * 109.58657 * 246.19669 * 28 9 7 43 43 H 1.08997 * 109.59196 * 6.48227 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2718 9 7 1.3702 -2.3621 0.3464 10 6 0.2262 -2.3398 1.2681 11 6 0.4975 -3.3187 2.4148 12 6 0.8122 -4.7005 1.8369 13 6 1.0498 -5.6890 2.9802 14 7 1.2329 -7.0351 2.4317 15 6 1.4650 -8.1059 3.2834 16 7 1.5158 -7.9151 4.5945 17 6 1.7425 -8.9369 5.4032 18 6 1.9162 -10.2088 4.8889 19 7 1.8622 -10.4140 3.5850 20 6 1.6407 -9.3965 2.7617 21 6 1.5787 -9.6229 1.2973 22 7 1.3644 -8.6964 0.3518 23 7 1.3862 -9.3002 -0.7878 24 7 1.6029 -10.5541 -0.5926 25 1 1.6654 -11.2274 -1.2880 26 7 1.7292 -10.7736 0.6710 27 6 2.0675 -4.6171 0.9656 28 6 1.8140 -3.6529 -0.1975 29 1 -0.4849 0.8400 -0.0004 30 1 -0.6769 -2.6404 0.7369 31 1 0.0968 -1.3344 1.6688 32 1 -0.3831 -3.3836 3.0539 33 1 1.3471 -2.9673 3.0004 34 1 -0.0279 -5.0407 1.2314 35 1 0.1900 -5.6835 3.6500 36 1 1.9430 -5.3974 3.5329 37 1 1.1918 -7.1779 1.4731 38 1 1.7879 -8.7779 6.4704 39 1 2.0965 -11.0384 5.5566 40 1 2.9025 -4.2533 1.5645 41 1 2.3045 -5.6061 0.5733 42 1 1.0404 -4.0607 -0.8482 43 1 2.7334 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822811069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:53 Heat of formation + Delta-G solvation = 202.382086 kcal Electronic energy + Delta-G solvation = -27880.355753 eV Core-core repulsion = 23999.605086 eV Total energy + Delta-G solvation = -3880.750667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.73608 -41.16385 -38.18248 -36.16469 -34.99390 -34.32793 -33.56207 -32.60247 -31.08949 -30.10323 -29.38164 -26.84175 -26.03766 -24.81764 -24.09918 -23.05365 -22.65607 -21.97858 -20.94869 -19.64985 -19.11449 -17.94900 -17.53808 -17.43608 -16.99257 -16.61216 -15.37328 -15.24266 -14.77009 -14.65489 -14.28596 -14.13038 -13.76973 -13.45409 -13.33429 -13.14145 -12.58169 -12.44295 -12.24180 -12.11068 -11.85051 -11.67571 -11.57207 -11.40397 -11.30363 -11.12560 -10.91236 -10.69482 -10.42587 -10.20061 -10.16914 -10.03155 -9.84387 -9.49213 -9.42340 -9.28008 -8.42870 -7.89259 -6.61152 -5.74461 -3.16387 0.28513 0.88348 1.12978 1.95419 1.99418 2.85129 3.32170 3.39655 3.47562 3.49963 3.64186 3.72440 4.09915 4.42011 4.53602 4.54653 4.95491 5.02513 5.14320 5.18503 5.28841 5.33058 5.44370 5.49854 5.66160 5.87445 5.93932 6.02824 6.09537 6.12162 6.22813 6.40215 6.56844 6.65811 6.70436 6.83945 6.87488 6.90762 6.96981 7.08195 7.42193 7.47717 7.70888 7.75602 7.84287 8.00253 8.50185 9.26551 9.90266 10.47513 11.34055 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002831 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.602571 B = 9889.217141 C =11054.668300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.091 4.091 13 C 0.126 3.874 14 N -0.686 5.686 15 C 0.403 3.597 16 N -0.499 5.499 17 C 0.134 3.866 18 C -0.031 4.031 19 N -0.367 5.367 20 C 0.062 3.938 21 C 0.240 3.760 22 N -0.281 5.281 23 N -0.033 5.033 24 N -0.226 5.226 25 H 0.477 0.523 26 N -0.268 5.268 27 C -0.127 4.127 28 C 0.146 3.854 29 H 0.252 0.748 30 H 0.017 0.983 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.427 0.573 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.017 0.983 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -23.334 6.937 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.171 4.171 12 C -0.110 4.110 13 C 0.002 3.998 14 N -0.321 5.321 15 C 0.158 3.842 16 N -0.223 5.223 17 C -0.031 4.031 18 C -0.196 4.196 19 N -0.081 5.081 20 C -0.089 4.089 21 C -0.041 4.041 22 N -0.156 5.156 23 N -0.028 5.028 24 N -0.072 5.072 25 H 0.332 0.668 26 N -0.120 5.120 27 C -0.166 4.166 28 C 0.020 3.980 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.274 0.726 38 H 0.191 0.809 39 H 0.189 0.811 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.035 0.965 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.999 -22.732 6.255 23.662 hybrid contribution 0.480 0.151 -0.254 0.564 sum 2.479 -22.581 6.001 23.496 Atomic orbital electron populations 1.70041 1.05230 1.25281 1.54245 1.25039 0.95280 0.98355 1.01089 0.86247 0.79384 0.84073 0.77229 1.20297 1.21797 1.21594 1.19232 0.92537 0.84871 1.41259 0.91748 1.44064 1.35886 1.01529 1.50070 1.20752 0.88638 0.98072 0.87918 1.22168 1.00278 0.94564 1.00063 1.21313 0.98998 0.95228 0.95442 1.21698 1.01577 0.79707 0.96772 1.45674 1.71439 1.05332 1.09699 1.19150 0.88978 0.86942 0.89139 1.68259 1.18795 1.33925 1.01286 1.23746 0.89795 0.88770 1.00812 1.23266 1.06896 0.98334 0.91095 1.67942 1.04313 1.31565 1.04310 1.17788 1.13788 0.89738 0.87587 1.22886 1.01499 0.85095 0.94611 1.75410 1.19526 1.26238 0.94416 1.78947 1.13716 0.91181 1.18947 1.47814 1.44380 1.08640 1.06413 0.66787 1.75124 1.20823 1.25175 0.90911 1.22061 0.96814 0.98960 0.98795 1.20880 0.97540 0.86871 0.92733 0.93756 0.96477 0.89433 0.93089 0.92383 0.91253 0.91561 0.91371 0.72602 0.80858 0.81116 0.92329 0.93224 0.96467 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 11.19 55.49 0.62 -25.75 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.99 2.99 -172.31 -0.52 -15.50 16 10 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 11 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 12 C -0.09 -1.51 2.19 -90.58 -0.20 -1.71 16 13 C 0.13 1.83 5.10 -4.04 -0.02 1.81 16 14 N -0.69 -9.72 5.35 -60.11 -0.32 -10.04 16 15 C 0.40 5.49 7.49 -154.63 -1.16 4.33 16 16 N -0.50 -6.20 9.73 -12.03 -0.12 -6.32 16 17 C 0.13 1.18 11.21 -17.35 -0.19 0.98 16 18 C -0.03 -0.28 11.20 -17.41 -0.20 -0.47 16 19 N -0.37 -4.44 10.44 -9.45 -0.10 -4.54 16 20 C 0.06 0.83 6.78 -82.55 -0.56 0.27 16 21 C 0.24 3.16 8.01 -156.28 -1.25 1.91 16 22 N -0.28 -3.75 9.47 32.14 0.30 -3.45 16 23 N -0.03 -0.37 13.47 60.35 0.81 0.44 16 24 N -0.23 -1.86 7.90 60.35 0.48 -1.38 16 25 H 0.48 1.45 8.96 -340.35 -3.05 -1.60 16 26 N -0.27 -3.02 12.39 32.15 0.40 -2.62 16 27 C -0.13 -2.26 5.25 -26.61 -0.14 -2.40 16 28 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 2.33 6.07 -51.93 -0.31 2.02 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.43 6.18 4.20 -40.82 -0.17 6.01 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.81 7.15 -51.93 -0.37 0.43 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -33.86 354.50 -10.36 -44.22 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.10 Total: 0.60 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -4.13 Total: 2.18 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: 1.56 Total: -69.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.86 -10.36 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822811069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.599 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds