Wall clock time and date at job start Tue Mar 31 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48505 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47266 * 299.99735 * 3 2 1 6 6 H 1.48501 * 109.47150 * 59.99961 * 3 2 1 7 7 C 1.38814 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00511 * 163.07310 * 7 2 1 9 9 N 1.36932 * 119.99714 * 343.07031 * 7 2 1 10 10 C 1.46935 * 120.63472 * 331.84911 * 9 7 2 11 11 C 1.53190 * 108.77862 * 233.58932 * 10 9 7 12 12 C 1.53043 * 109.31171 * 305.36383 * 11 10 9 13 13 C 1.52994 * 109.45907 * 181.38810 * 12 11 10 14 14 N 1.46502 * 109.46979 * 174.99832 * 13 12 11 15 15 C 1.38779 * 120.00163 * 179.97438 * 14 13 12 16 16 N 1.32583 * 120.15268 * 0.30020 * 15 14 13 17 17 C 1.32267 * 119.99874 * 180.26793 * 16 15 14 18 18 C 1.38287 * 120.31219 * 359.45386 * 17 16 15 19 19 N 1.32111 * 120.31607 * 0.24455 * 18 17 16 20 20 C 1.32749 * 119.99288 * 0.02963 * 19 18 17 21 21 C 1.48311 * 120.15456 * 180.02562 * 20 19 18 22 22 N 1.34095 * 126.68127 * 180.02562 * 21 20 19 23 23 N 1.28988 * 107.26324 * 179.97438 * 22 21 20 24 24 N 1.28734 * 108.95793 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.33157 * 179.97438 * 24 23 22 26 26 N 1.28871 * 109.33045 * 359.72039 * 24 23 22 27 27 C 1.53036 * 109.53945 * 61.36209 * 12 11 10 28 28 C 1.46927 * 120.62969 * 151.82774 * 9 7 2 29 29 H 0.96994 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58477 * 113.79539 * 10 9 7 31 31 H 1.09003 * 109.69519 * 353.44543 * 10 9 7 32 32 H 1.08998 * 109.49753 * 185.41190 * 11 10 9 33 33 H 1.09006 * 109.52308 * 65.32712 * 11 10 9 34 34 H 1.09002 * 109.45915 * 301.35971 * 12 11 10 35 35 H 1.08996 * 109.47797 * 54.99624 * 13 12 11 36 36 H 1.09007 * 109.47192 * 294.99176 * 13 12 11 37 37 H 0.97001 * 119.99984 * 359.97438 * 14 13 12 38 38 H 1.07999 * 119.84445 * 179.72147 * 17 16 15 39 39 H 1.08007 * 119.84224 * 180.27660 * 18 17 16 40 40 H 1.09007 * 109.49733 * 58.59205 * 27 12 11 41 41 H 1.08999 * 109.50077 * 178.68336 * 27 12 11 42 42 H 1.09003 * 109.58657 * 246.19669 * 28 9 7 43 43 H 1.08997 * 109.59196 * 6.48227 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2718 9 7 1.3702 -2.3621 0.3464 10 6 0.2262 -2.3398 1.2681 11 6 0.4975 -3.3187 2.4148 12 6 0.8122 -4.7005 1.8369 13 6 1.0498 -5.6890 2.9802 14 7 1.2329 -7.0351 2.4317 15 6 1.4650 -8.1059 3.2834 16 7 1.5158 -7.9151 4.5945 17 6 1.7425 -8.9369 5.4032 18 6 1.9162 -10.2088 4.8889 19 7 1.8622 -10.4140 3.5850 20 6 1.6407 -9.3965 2.7617 21 6 1.5787 -9.6229 1.2973 22 7 1.3644 -8.6964 0.3518 23 7 1.3862 -9.3002 -0.7878 24 7 1.6029 -10.5541 -0.5926 25 1 1.6654 -11.2274 -1.2880 26 7 1.7292 -10.7736 0.6710 27 6 2.0675 -4.6171 0.9656 28 6 1.8140 -3.6529 -0.1975 29 1 -0.4849 0.8400 -0.0004 30 1 -0.6769 -2.6404 0.7369 31 1 0.0968 -1.3344 1.6688 32 1 -0.3831 -3.3836 3.0539 33 1 1.3471 -2.9673 3.0004 34 1 -0.0279 -5.0407 1.2314 35 1 0.1900 -5.6835 3.6500 36 1 1.9430 -5.3974 3.5329 37 1 1.1918 -7.1779 1.4731 38 1 1.7879 -8.7779 6.4704 39 1 2.0965 -11.0384 5.5566 40 1 2.9025 -4.2533 1.5645 41 1 2.3045 -5.6061 0.5733 42 1 1.0404 -4.0607 -0.8482 43 1 2.7334 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822811069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:52 Heat of formation + Delta-G solvation = 178.403020 kcal Electronic energy + Delta-G solvation = -27881.395563 eV Core-core repulsion = 23999.605086 eV Total energy + Delta-G solvation = -3881.790477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.56656 -41.98906 -39.67155 -37.41097 -35.82716 -35.37169 -34.91281 -33.70945 -32.70446 -31.57929 -30.75992 -28.23944 -26.98998 -25.95667 -25.40905 -24.23981 -23.59423 -23.49629 -22.45209 -20.77239 -20.40895 -19.00346 -18.58684 -18.31612 -18.26533 -17.75164 -16.86498 -16.32631 -16.09791 -15.70727 -15.46208 -15.30477 -15.29086 -15.08750 -14.81826 -14.24031 -13.94075 -13.79950 -13.68616 -13.37896 -13.03744 -12.89523 -12.69343 -12.58353 -12.53458 -12.44813 -12.30223 -12.20045 -12.04341 -11.94960 -11.83497 -11.58538 -11.20327 -11.11707 -10.89097 -10.53458 -10.13651 -8.80246 -8.66099 -7.85950 -5.31358 -0.52608 0.05906 0.31783 1.12071 1.33183 1.46501 1.48226 1.59060 1.95211 2.47280 2.52324 2.84150 2.88486 3.27554 3.32061 3.56052 3.71489 3.79473 3.88351 3.97302 4.08749 4.20561 4.26856 4.47942 4.53296 4.54144 4.55418 4.69656 4.76134 4.82039 4.95952 5.01047 5.14697 5.28559 5.29700 5.32305 5.40724 5.54838 5.55476 5.67029 5.78869 6.00315 6.06625 6.41061 6.62979 6.89239 7.11081 7.16863 7.88180 8.40334 9.20446 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002831 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.602571 B = 9889.217141 C =11054.668300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.177 3.823 11 C -0.117 4.117 12 C -0.081 4.081 13 C 0.144 3.856 14 N -0.697 5.697 15 C 0.387 3.613 16 N -0.518 5.518 17 C 0.141 3.859 18 C -0.016 4.016 19 N -0.388 5.388 20 C 0.039 3.961 21 C 0.227 3.773 22 N -0.306 5.306 23 N -0.043 5.043 24 N -0.195 5.195 25 H 0.497 0.503 26 N -0.273 5.273 27 C -0.111 4.111 28 C 0.142 3.858 29 H 0.250 0.750 30 H -0.006 1.006 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.423 0.577 38 H 0.219 0.781 39 H 0.213 0.787 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.011 0.989 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -25.300 8.851 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.157 4.157 12 C -0.100 4.100 13 C 0.020 3.980 14 N -0.334 5.334 15 C 0.144 3.856 16 N -0.241 5.241 17 C -0.024 4.024 18 C -0.182 4.182 19 N -0.103 5.103 20 C -0.109 4.109 21 C -0.054 4.054 22 N -0.180 5.180 23 N -0.038 5.038 24 N -0.047 5.047 25 H 0.356 0.644 26 N -0.126 5.126 27 C -0.150 4.150 28 C 0.017 3.983 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.270 0.730 38 H 0.235 0.765 39 H 0.229 0.771 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.029 0.971 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.017 -24.743 8.130 26.218 hybrid contribution 0.183 0.574 -0.792 0.995 sum 3.200 -24.168 7.338 25.460 Atomic orbital electron populations 1.70193 1.06630 1.25748 1.55509 1.25796 0.96068 1.01450 1.01311 0.85217 0.78576 0.79880 0.76825 1.19222 1.21947 1.21478 1.19539 0.92757 0.86130 1.40827 0.91852 1.44336 1.36027 1.02209 1.50856 1.20583 0.87594 0.97662 0.88990 1.21949 1.01243 0.94324 0.98182 1.21151 0.98159 0.94700 0.96019 1.21367 1.01710 0.79590 0.95339 1.45532 1.72940 1.05202 1.09685 1.19211 0.89876 0.86835 0.89647 1.68298 1.19178 1.35589 1.01055 1.24534 0.87492 0.87985 1.02383 1.24059 1.03902 0.99740 0.90463 1.67999 1.05190 1.31462 1.05648 1.17836 1.15213 0.89981 0.87905 1.23048 1.01980 0.85404 0.94970 1.75376 1.20693 1.27044 0.94885 1.78874 1.14249 0.92079 1.18555 1.47849 1.42142 1.08433 1.06264 0.64367 1.75071 1.21050 1.24785 0.91736 1.21863 0.97205 0.98585 0.97377 1.21010 0.97008 0.86161 0.94130 0.94106 0.98750 0.92699 0.90818 0.92490 0.91748 0.90969 0.91532 0.73006 0.76467 0.77059 0.92676 0.91438 0.97059 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 11.19 21.65 0.24 -55.94 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 3 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.26 -14.83 9.58 84.03 0.81 -14.02 16 8 H 0.06 3.52 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -31.62 2.99 -699.06 -2.09 -33.71 16 10 C 0.18 8.70 5.30 86.36 0.46 9.16 16 11 C -0.12 -4.37 5.36 30.67 0.16 -4.21 16 12 C -0.08 -2.67 2.19 -10.77 -0.02 -2.69 16 13 C 0.14 4.00 5.10 86.38 0.44 4.44 16 14 N -0.70 -19.25 5.35 -344.08 -1.84 -21.09 16 15 C 0.39 10.11 7.49 133.37 1.00 11.11 16 16 N -0.52 -11.66 9.73 -191.97 -1.87 -13.53 16 17 C 0.14 1.96 11.21 84.64 0.95 2.91 16 18 C -0.02 -0.22 11.20 84.66 0.95 0.72 16 19 N -0.39 -8.62 10.44 -183.80 -1.92 -10.54 16 20 C 0.04 0.99 6.78 42.19 0.29 1.28 16 21 C 0.23 5.87 8.01 137.30 1.10 6.97 16 22 N -0.31 -8.13 9.47 -52.24 -0.49 -8.62 16 23 N -0.04 -0.94 13.47 37.02 0.50 -0.44 16 24 N -0.19 -3.02 7.90 37.02 0.29 -2.72 16 25 H 0.50 2.34 8.96 -347.53 -3.12 -0.78 16 26 N -0.27 -5.92 12.39 -52.19 -0.65 -6.57 16 27 C -0.11 -3.91 5.25 30.67 0.16 -3.75 16 28 C 0.14 6.19 6.52 86.36 0.56 6.76 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.05 3.04 6.07 -2.39 -0.01 3.02 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.42 12.17 4.20 -92.71 -0.39 11.78 16 38 H 0.22 0.92 8.06 -2.91 -0.02 0.89 16 39 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.07 2.15 7.15 -2.39 -0.02 2.14 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 Total: -1.00 -75.54 354.50 -0.96 -76.50 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -2.43 Total: 12.84 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 7.27 Total: 16.18 kcal Atomic # 7 Polarization: -145.34 SS G_CDS: -7.83 Total: -153.16 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.54 -0.96 -76.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822811069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.898 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds