Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47109 * 2 1 4 4 N 1.46898 * 109.47141 * 119.99874 * 2 1 3 5 5 C 1.46899 * 111.00212 * 275.00037 * 4 2 1 6 6 C 1.50696 * 109.47122 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00594 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99867 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47198 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00058 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00169 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00103 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00097 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47279 * 89.99870 * 14 12 10 16 16 H 1.48503 * 109.47502 * 210.00062 * 14 12 10 17 17 H 1.48503 * 109.47341 * 330.00065 * 14 12 10 18 18 C 1.50699 * 109.47248 * 239.99962 * 2 1 3 19 19 C 1.38330 * 119.94285 * 279.99817 * 18 2 1 20 20 C 1.38292 * 120.24058 * 179.97438 * 19 18 2 21 21 C 1.38055 * 120.11393 * 0.02562 * 20 19 18 22 22 C 1.39271 * 119.88127 * 359.97438 * 21 20 19 23 23 C 1.48469 * 120.11730 * 179.97438 * 22 21 20 24 24 N 1.34044 * 126.67356 * 179.68680 * 23 22 21 25 25 N 1.28987 * 107.26916 * 179.83434 * 24 23 22 26 26 N 1.28735 * 108.94013 * 0.43503 * 25 24 23 27 27 H 0.97001 * 125.33851 * 179.71507 * 26 25 24 28 28 N 1.28866 * 109.31668 * 359.72617 * 26 25 24 29 29 C 1.38004 * 119.93876 * 99.97905 * 18 2 1 30 30 H 1.08997 * 109.47385 * 60.00543 * 1 2 3 31 31 H 1.09004 * 109.46853 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47514 * 299.99528 * 1 2 3 33 33 H 1.00903 * 111.00439 * 38.95851 * 4 2 1 34 34 H 1.08997 * 109.47277 * 300.00253 * 5 4 2 35 35 H 1.09000 * 109.47077 * 60.00054 * 5 4 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47359 * 300.00498 * 9 8 6 38 38 H 1.09000 * 109.46903 * 60.00244 * 9 8 6 39 39 H 0.97002 * 119.99763 * 180.02562 * 13 12 10 40 40 H 1.08007 * 119.88015 * 359.95797 * 19 18 2 41 41 H 1.07997 * 119.94435 * 180.02562 * 20 19 18 42 42 H 1.08001 * 120.05763 * 179.70068 * 21 20 19 43 43 H 1.08000 * 120.06231 * 0.04098 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 8 2.8677 -1.6986 3.4703 8 7 2.7282 0.1205 4.7325 9 6 3.2185 -0.6033 5.9081 10 6 3.2830 0.3355 7.0852 11 1 2.9879 1.3679 6.9693 12 6 3.7188 -0.1236 8.3100 13 7 4.0786 -1.3807 8.4510 14 14 3.7981 1.0399 9.7693 15 1 2.5040 1.0101 10.4971 16 1 4.8895 0.6151 10.6824 17 1 4.0639 2.4196 9.2885 18 6 2.0323 -0.7104 -1.2304 19 6 2.0663 -2.0929 -1.2640 20 6 2.5256 -2.7511 -2.3902 21 6 2.9535 -2.0307 -3.4874 22 6 2.9214 -0.6386 -3.4589 23 6 3.3808 0.1414 -4.6357 24 7 3.4015 1.4765 -4.7527 25 7 3.8717 1.7512 -5.9219 26 7 4.1338 0.6505 -6.5360 27 1 4.4941 0.5811 -7.4340 28 7 3.8422 -0.3444 -5.7708 29 6 2.4573 0.0195 -2.3219 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.4496 -1.4980 1.4101 34 1 2.7588 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5043 1.0618 4.8010 37 1 2.5412 -1.4261 6.1367 38 1 4.2135 -0.9981 5.7028 39 1 4.3849 -1.7038 9.3129 40 1 1.7331 -2.6603 -0.4075 41 1 2.5497 -3.8306 -2.4114 42 1 3.3165 -2.5456 -4.3645 43 1 2.4307 1.0988 -2.2945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824563854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = 108.796539 kcal Electronic energy + Delta-G solvation = -26097.388651 eV Core-core repulsion = 22180.287059 eV Total energy + Delta-G solvation = -3917.101592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.76460 -39.85145 -38.79236 -36.60526 -34.68938 -34.14761 -33.78866 -32.34209 -31.88485 -30.82013 -29.31779 -27.67996 -25.65142 -25.16894 -24.71609 -23.27509 -22.35637 -22.13226 -20.47283 -19.67976 -19.42952 -17.60048 -17.45280 -16.75152 -15.93454 -15.89772 -15.64605 -15.23590 -15.05557 -14.71733 -14.35866 -14.11227 -13.89268 -13.79043 -13.64847 -13.35919 -12.73620 -12.67095 -12.64968 -12.42576 -12.19016 -11.93129 -11.76814 -11.68108 -11.52913 -11.44061 -11.33671 -11.13551 -10.99564 -10.96121 -10.86858 -10.30972 -9.38742 -9.06045 -9.02807 -8.80348 -8.72430 -8.38278 -7.85177 -6.15776 -4.22674 0.47578 0.90620 1.18180 1.90579 2.11714 3.24710 3.30895 3.33277 3.36490 3.40418 3.57051 3.81249 3.92489 4.31223 4.48179 4.61104 4.72456 4.85842 4.94960 4.99161 5.05737 5.13964 5.20272 5.26822 5.31910 5.37242 5.42873 5.51776 5.61549 5.68164 5.73915 5.81577 5.92498 6.01030 6.19834 6.28040 6.37385 6.70745 6.91535 7.32026 7.36241 7.46398 7.53690 7.68469 7.82487 7.98392 8.65012 8.79839 9.13314 9.44112 10.94386 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.001798 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.073796 B =15566.098131 C =15929.101444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 H 0.091 0.909 4 N -0.664 5.664 5 C 0.040 3.960 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.251 3.749 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.066 4.066 19 C -0.071 4.071 20 C -0.123 4.123 21 C -0.083 4.083 22 C -0.026 4.026 23 C 0.226 3.774 24 N -0.268 5.268 25 N -0.051 5.051 26 N -0.230 5.230 27 H 0.475 0.525 28 N -0.297 5.297 29 C -0.070 4.070 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.352 0.648 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.390 0.610 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 3.126 -29.707 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.012 3.988 3 H 0.109 0.891 4 N -0.296 5.296 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.364 5.364 9 C 0.130 3.870 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.067 4.067 19 C -0.090 4.090 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.029 4.029 23 C -0.054 4.054 24 N -0.141 5.141 25 N -0.046 5.046 26 N -0.075 5.075 27 H 0.329 0.671 28 N -0.148 5.148 29 C -0.091 4.091 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.172 0.828 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.222 0.778 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.422 2.776 -30.091 30.541 hybrid contribution -0.696 0.695 0.720 1.219 sum -5.118 3.472 -29.372 30.016 Atomic orbital electron populations 1.22519 0.96016 1.02752 1.02628 1.20464 0.92768 0.97555 0.88048 0.89115 1.60199 1.58015 1.09098 1.02280 1.21877 1.00857 0.96131 0.90385 1.20340 0.79404 0.87905 0.84304 1.90662 1.50703 1.16111 1.84713 1.46446 1.65521 1.13845 1.10563 1.19084 0.95030 0.92422 0.80471 1.21234 1.46081 0.96513 0.94349 0.91906 1.24956 0.94820 0.95343 0.98936 1.69978 1.42971 1.14353 1.24960 0.86416 0.77818 0.80750 0.81916 1.20492 1.21011 1.19754 1.19651 0.98926 0.93775 0.94351 1.21193 0.96308 0.93984 0.97488 1.21091 0.99695 1.00265 0.93021 1.21107 0.98204 0.92047 0.99019 1.17117 1.04328 0.91804 0.89691 1.23765 0.99638 0.88581 0.93395 1.76101 1.16449 1.13002 1.08588 1.78922 1.12292 1.11869 1.01499 1.47727 1.41600 1.01052 1.17158 0.67103 1.74924 1.19575 1.16763 1.03575 1.20958 0.96459 1.00405 0.91265 0.91659 0.91988 0.91985 0.82792 0.88445 0.92637 0.77789 0.95625 0.95522 0.92460 0.85213 0.85231 0.85289 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.14 37.16 0.34 -1.13 16 2 C 0.12 1.19 2.79 -68.87 -0.19 1.00 16 3 H 0.09 0.83 7.66 -51.93 -0.40 0.44 16 4 N -0.66 -8.43 5.33 -109.23 -0.58 -9.01 16 5 C 0.04 0.53 5.97 -4.98 -0.03 0.50 16 6 C 0.50 9.59 7.87 -10.98 -0.09 9.51 16 7 O -0.54 -12.83 16.20 5.56 0.09 -12.74 16 8 N -0.71 -14.74 5.55 -61.47 -0.34 -15.08 16 9 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 10 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 11 H 0.06 1.58 7.60 -52.48 -0.40 1.19 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 14 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 C -0.07 -0.68 4.95 -104.67 -0.52 -1.19 16 19 C -0.07 -0.71 9.32 -39.53 -0.37 -1.08 16 20 C -0.12 -1.10 10.03 -39.63 -0.40 -1.50 16 21 C -0.08 -0.77 9.70 -39.26 -0.38 -1.15 16 22 C -0.03 -0.27 5.88 -104.89 -0.62 -0.88 16 23 C 0.23 2.39 7.94 -156.31 -1.24 1.15 16 24 N -0.27 -3.00 12.23 32.16 0.39 -2.61 16 25 N -0.05 -0.47 13.47 60.35 0.81 0.35 16 26 N -0.23 -1.46 7.90 60.35 0.48 -0.99 16 27 H 0.47 0.65 8.96 -340.37 -3.05 -2.40 16 28 N -0.30 -2.63 12.08 32.17 0.39 -2.24 16 29 C -0.07 -0.71 9.32 -39.26 -0.37 -1.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 33 H 0.35 4.56 7.51 -39.29 -0.30 4.26 16 34 H 0.10 1.16 8.05 -51.93 -0.42 0.75 16 35 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 36 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.13 1.27 7.23 -52.48 -0.38 0.89 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.13 1.02 7.88 -52.49 -0.41 0.60 16 43 H 0.13 1.26 7.86 -52.49 -0.41 0.85 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -35.11 374.86 -9.83 -44.94 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.13 Total: 3.92 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.30 Total: -2.64 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 1.89 Total: -54.93 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.11 -9.83 -44.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824563854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.734 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds