Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47109 * 2 1 4 4 N 1.46898 * 109.47141 * 119.99874 * 2 1 3 5 5 C 1.46899 * 111.00212 * 275.00037 * 4 2 1 6 6 C 1.50696 * 109.47122 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00594 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99867 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47198 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00058 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00169 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00103 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00097 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47279 * 89.99870 * 14 12 10 16 16 H 1.48503 * 109.47502 * 210.00062 * 14 12 10 17 17 H 1.48503 * 109.47341 * 330.00065 * 14 12 10 18 18 C 1.50699 * 109.47248 * 239.99962 * 2 1 3 19 19 C 1.38330 * 119.94285 * 279.99817 * 18 2 1 20 20 C 1.38292 * 120.24058 * 179.97438 * 19 18 2 21 21 C 1.38055 * 120.11393 * 0.02562 * 20 19 18 22 22 C 1.39271 * 119.88127 * 359.97438 * 21 20 19 23 23 C 1.48469 * 120.11730 * 179.97438 * 22 21 20 24 24 N 1.34044 * 126.67356 * 179.68680 * 23 22 21 25 25 N 1.28987 * 107.26916 * 179.83434 * 24 23 22 26 26 N 1.28735 * 108.94013 * 0.43503 * 25 24 23 27 27 H 0.97001 * 125.33851 * 179.71507 * 26 25 24 28 28 N 1.28866 * 109.31668 * 359.72617 * 26 25 24 29 29 C 1.38004 * 119.93876 * 99.97905 * 18 2 1 30 30 H 1.08997 * 109.47385 * 60.00543 * 1 2 3 31 31 H 1.09004 * 109.46853 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47514 * 299.99528 * 1 2 3 33 33 H 1.00903 * 111.00439 * 38.95851 * 4 2 1 34 34 H 1.08997 * 109.47277 * 300.00253 * 5 4 2 35 35 H 1.09000 * 109.47077 * 60.00054 * 5 4 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47359 * 300.00498 * 9 8 6 38 38 H 1.09000 * 109.46903 * 60.00244 * 9 8 6 39 39 H 0.97002 * 119.99763 * 180.02562 * 13 12 10 40 40 H 1.08007 * 119.88015 * 359.95797 * 19 18 2 41 41 H 1.07997 * 119.94435 * 180.02562 * 20 19 18 42 42 H 1.08001 * 120.05763 * 179.70068 * 21 20 19 43 43 H 1.08000 * 120.06231 * 0.04098 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 8 2.8677 -1.6986 3.4703 8 7 2.7282 0.1205 4.7325 9 6 3.2185 -0.6033 5.9081 10 6 3.2830 0.3355 7.0852 11 1 2.9879 1.3679 6.9693 12 6 3.7188 -0.1236 8.3100 13 7 4.0786 -1.3807 8.4510 14 14 3.7981 1.0399 9.7693 15 1 2.5040 1.0101 10.4971 16 1 4.8895 0.6151 10.6824 17 1 4.0639 2.4196 9.2885 18 6 2.0323 -0.7104 -1.2304 19 6 2.0663 -2.0929 -1.2640 20 6 2.5256 -2.7511 -2.3902 21 6 2.9535 -2.0307 -3.4874 22 6 2.9214 -0.6386 -3.4589 23 6 3.3808 0.1414 -4.6357 24 7 3.4015 1.4765 -4.7527 25 7 3.8717 1.7512 -5.9219 26 7 4.1338 0.6505 -6.5360 27 1 4.4941 0.5811 -7.4340 28 7 3.8422 -0.3444 -5.7708 29 6 2.4573 0.0195 -2.3219 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.4496 -1.4980 1.4101 34 1 2.7588 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5043 1.0618 4.8010 37 1 2.5412 -1.4261 6.1367 38 1 4.2135 -0.9981 5.7028 39 1 4.3849 -1.7038 9.3129 40 1 1.7331 -2.6603 -0.4075 41 1 2.5497 -3.8306 -2.4114 42 1 3.3165 -2.5456 -4.3645 43 1 2.4307 1.0988 -2.2945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824563854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = 81.929485 kcal Electronic energy + Delta-G solvation = -26098.553694 eV Core-core repulsion = 22180.287059 eV Total energy + Delta-G solvation = -3918.266635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.45070 -40.74529 -40.22143 -37.55499 -36.05847 -35.38631 -34.53654 -34.30609 -32.81459 -31.55859 -30.21808 -29.37262 -26.97048 -25.87228 -25.45904 -24.53162 -23.70700 -22.98024 -21.37649 -21.18052 -20.08774 -19.05847 -18.13238 -17.99277 -17.29334 -17.17096 -16.69204 -16.55326 -16.27265 -16.04031 -15.42515 -15.25408 -14.94158 -14.75884 -14.45774 -14.34753 -14.13158 -13.97358 -13.77650 -13.49370 -13.36585 -13.15034 -12.89246 -12.82474 -12.66325 -12.47182 -12.38442 -12.24209 -12.21206 -12.07771 -11.83629 -11.70683 -11.46541 -10.78305 -10.68775 -9.79733 -9.75331 -9.54745 -9.30468 -8.27390 -6.43801 -0.23718 0.20055 0.45631 1.36088 1.43524 1.44407 1.46711 1.57908 1.84969 2.31425 2.51425 2.69113 2.87639 3.07480 3.16175 3.39635 3.82491 3.96980 4.04984 4.14239 4.25965 4.28375 4.33470 4.41954 4.45021 4.54083 4.57062 4.65700 4.80449 4.94563 5.01403 5.12271 5.14692 5.27684 5.29001 5.47255 5.51771 5.53536 5.59106 5.63316 5.73563 5.87705 5.98593 6.06974 6.37567 6.67972 6.99143 7.12394 7.25917 7.57172 8.84716 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.001798 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.073796 B =15566.098131 C =15929.101444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.126 3.874 3 H 0.101 0.899 4 N -0.681 5.681 5 C 0.057 3.943 6 C 0.492 3.508 7 O -0.592 6.592 8 N -0.710 5.710 9 C 0.267 3.733 10 C -0.556 4.556 11 H 0.085 0.915 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.985 3.015 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.256 1.256 18 C -0.073 4.073 19 C -0.084 4.084 20 C -0.123 4.123 21 C -0.085 4.085 22 C -0.036 4.036 23 C 0.212 3.788 24 N -0.294 5.294 25 N -0.058 5.058 26 N -0.201 5.201 27 H 0.494 0.506 28 N -0.296 5.296 29 C -0.076 4.076 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.408 0.592 37 H -0.013 1.013 38 H -0.016 1.016 39 H 0.268 0.732 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 5.179 -30.717 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.017 3.983 3 H 0.119 0.881 4 N -0.313 5.313 5 C -0.075 4.075 6 C 0.279 3.721 7 O -0.473 6.473 8 N -0.361 5.361 9 C 0.144 3.856 10 C -0.593 4.593 11 H 0.103 0.897 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.808 3.192 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.179 1.179 18 C -0.074 4.074 19 C -0.103 4.103 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.039 4.039 23 C -0.067 4.067 24 N -0.167 5.167 25 N -0.053 5.053 26 N -0.052 5.052 27 H 0.353 0.647 28 N -0.149 5.149 29 C -0.096 4.096 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.244 0.756 37 H 0.005 0.995 38 H 0.002 0.998 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.075 4.888 -31.163 31.950 hybrid contribution -0.462 -0.024 0.871 0.986 sum -5.537 4.864 -30.292 31.176 Atomic orbital electron populations 1.22457 0.94624 1.02890 1.03347 1.20492 0.93811 0.97538 0.86465 0.88102 1.60172 1.58940 1.09359 1.02842 1.21788 1.02659 0.95517 0.87532 1.21461 0.77792 0.87560 0.85241 1.90639 1.52480 1.18621 1.85517 1.46180 1.65674 1.14546 1.09671 1.18500 0.92027 0.92109 0.82963 1.21643 1.45785 0.97410 0.94507 0.89746 1.26072 0.94075 0.97065 1.02502 1.70143 1.44076 1.16808 1.25945 0.85159 0.77908 0.78738 0.77414 1.19567 1.21094 1.17932 1.19727 0.99193 0.93910 0.94568 1.21312 0.96906 0.94200 0.97902 1.21326 0.98936 1.01305 0.92529 1.21273 0.97912 0.91785 0.99500 1.17282 1.04506 0.92323 0.89833 1.23862 1.00326 0.88578 0.93955 1.76075 1.17578 1.13504 1.09511 1.78857 1.12632 1.12494 1.01336 1.47789 1.39795 1.00033 1.17591 0.64683 1.74886 1.19419 1.17196 1.03371 1.21011 0.96652 1.00633 0.91343 0.90695 0.92201 0.91412 0.83233 0.86206 0.89312 0.75598 0.99469 0.99755 0.92313 0.85454 0.83362 0.84046 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.14 71.98 0.66 -1.85 16 2 C 0.13 2.26 2.79 44.17 0.12 2.38 16 3 H 0.10 1.60 7.66 -2.39 -0.02 1.59 16 4 N -0.68 -16.52 5.33 -499.49 -2.66 -19.18 16 5 C 0.06 1.40 5.97 85.56 0.51 1.91 16 6 C 0.49 19.02 7.87 87.65 0.69 19.71 16 7 O -0.59 -28.85 16.20 -3.02 -0.05 -28.90 16 8 N -0.71 -29.32 5.55 -466.79 -2.59 -31.91 16 9 C 0.27 14.65 5.43 85.63 0.46 15.12 16 10 C -0.56 -30.15 9.28 25.60 0.24 -29.91 16 11 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 12 C 0.00 0.13 5.46 84.65 0.46 0.59 16 13 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 14 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 C -0.07 -1.43 4.95 -19.90 -0.10 -1.53 16 19 C -0.08 -1.64 9.32 22.30 0.21 -1.44 16 20 C -0.12 -2.10 10.03 22.24 0.22 -1.88 16 21 C -0.08 -1.47 9.70 22.47 0.22 -1.26 16 22 C -0.04 -0.72 5.88 -20.04 -0.12 -0.83 16 23 C 0.21 4.30 7.94 137.38 1.09 5.39 16 24 N -0.29 -6.37 12.23 -52.18 -0.64 -7.01 16 25 N -0.06 -1.01 13.47 37.02 0.50 -0.51 16 26 N -0.20 -2.24 7.90 37.02 0.29 -1.95 16 27 H 0.49 0.39 8.96 -347.54 -3.12 -2.73 16 28 N -0.30 -4.83 12.08 -52.13 -0.63 -5.46 16 29 C -0.08 -1.48 9.32 22.48 0.21 -1.27 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 32 H 0.07 0.90 7.45 -2.39 -0.02 0.88 16 33 H 0.35 8.88 7.51 -89.69 -0.67 8.20 16 34 H 0.12 2.49 8.05 -2.39 -0.02 2.47 16 35 H 0.09 1.66 7.44 -2.39 -0.02 1.64 16 36 H 0.41 13.67 8.32 -92.71 -0.77 12.90 16 37 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 38 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.13 2.50 7.23 -2.91 -0.02 2.48 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.14 2.03 7.88 -2.91 -0.02 2.01 16 43 H 0.14 2.49 7.86 -2.91 -0.02 2.47 16 Total: -1.00 -78.68 374.86 -2.06 -80.74 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -3.47 Total: 20.79 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 4.88 Total: 5.15 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.44 Total: -122.07 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.05 Total: -28.90 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -78.68 -2.06 -80.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824563854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.672 kcal (2) G-P(sol) polarization free energy of solvation -78.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds