Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34842 * 125.52149 * 2 1 4 4 C 1.36562 * 108.60944 * 180.02562 * 3 2 1 5 5 C 1.48504 * 126.28526 * 180.02562 * 4 3 2 6 6 N 1.34032 * 126.67616 * 179.71325 * 5 4 3 7 7 N 1.28988 * 107.27193 * 179.82949 * 6 5 4 8 8 N 1.28734 * 108.93933 * 0.43676 * 7 6 5 9 9 H 0.96997 * 125.34082 * 179.72328 * 8 7 6 10 10 N 1.28873 * 109.31158 * 359.71769 * 8 7 6 11 11 C 1.40807 * 107.43487 * 0.26638 * 4 3 2 12 12 C 1.36671 * 107.04953 * 359.57199 * 11 4 3 13 13 C 1.46723 * 126.01991 * 180.11726 * 12 11 4 14 14 O 1.21692 * 119.99759 * 201.87340 * 13 12 11 15 15 N 1.34774 * 120.00642 * 21.87727 * 13 12 11 16 16 C 1.46929 * 120.62518 * 6.22289 * 15 13 12 17 17 C 1.53625 * 108.54119 * 126.37311 * 16 15 13 18 18 C 1.53045 * 109.24080 * 54.85782 * 17 16 15 19 19 C 1.50698 * 109.44956 * 178.49989 * 18 17 16 20 20 H 1.07998 * 120.00307 * 120.05822 * 19 18 17 21 21 C 1.37877 * 119.99867 * 300.06177 * 19 18 17 22 22 N 1.31514 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00010 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46988 * 59.99604 * 23 21 19 25 25 H 1.48491 * 109.46858 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46780 * 299.99892 * 23 21 19 27 27 C 1.53045 * 109.53499 * 298.50976 * 18 17 16 28 28 C 1.46924 * 120.63720 * 186.51459 * 15 13 12 29 29 H 1.09002 * 109.47382 * 95.43936 * 1 2 3 30 30 H 1.09005 * 109.46893 * 215.43963 * 1 2 3 31 31 H 1.09002 * 109.47121 * 335.43699 * 1 2 3 32 32 H 1.07998 * 125.69821 * 359.97438 * 3 2 1 33 33 H 1.08005 * 126.47243 * 179.73976 * 11 4 3 34 34 H 1.08997 * 109.58879 * 246.20257 * 16 15 13 35 35 H 1.08995 * 109.58893 * 6.63289 * 16 15 13 36 36 H 1.09004 * 109.63553 * 294.86879 * 17 16 15 37 37 H 1.08998 * 109.43597 * 174.72069 * 17 16 15 38 38 H 1.08994 * 109.46062 * 58.53085 * 18 17 16 39 39 H 0.97000 * 119.99918 * 180.02562 * 22 21 19 40 40 H 1.08992 * 109.50136 * 301.41467 * 27 18 17 41 41 H 1.09006 * 109.49321 * 181.31591 * 27 18 17 42 42 H 1.09007 * 109.57987 * 353.36221 * 28 15 13 43 43 H 1.08998 * 109.59081 * 113.64637 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2485 1.0975 0.0000 4 6 3.5550 0.7002 -0.0006 5 6 4.7441 1.5898 -0.0002 6 7 6.0291 1.2087 0.0046 7 7 6.7465 2.2806 -0.0007 8 7 5.9670 3.3051 0.0008 9 1 6.2569 4.2308 0.0015 10 7 4.7410 2.9079 0.0010 11 6 3.5679 -0.7078 -0.0072 12 6 2.2649 -1.1204 -0.0007 13 6 1.8007 -2.5123 -0.0017 14 8 0.6781 -2.7789 -0.3885 15 7 2.6174 -3.4955 0.4258 16 6 3.9223 -3.1784 1.0219 17 6 4.0136 -3.8668 2.3923 18 6 3.7475 -5.3644 2.2231 19 6 3.8722 -6.0503 3.5591 20 1 3.0288 -6.5825 3.9738 21 6 5.0630 -5.9984 4.2522 22 7 6.0901 -5.3507 3.7471 23 14 5.2178 -6.8492 5.9081 24 1 4.9614 -8.3026 5.7436 25 1 6.5882 -6.6461 6.4426 26 1 4.2270 -6.2756 6.8538 27 6 2.3351 -5.5742 1.6722 28 6 2.2225 -4.9050 0.2988 29 1 -0.3634 -0.0974 -1.0230 30 1 -0.3633 -0.8373 0.5959 31 1 -0.3633 0.9347 0.4272 32 1 1.9008 2.1200 -0.0004 33 1 4.4422 -1.3418 -0.0133 34 1 4.7187 -3.5429 0.3731 35 1 4.0147 -2.0996 1.1465 36 1 3.2718 -3.4395 3.0670 37 1 5.0109 -3.7192 2.8066 38 1 4.4744 -5.7863 1.5291 39 1 6.9280 -5.3145 4.2346 40 1 1.6092 -5.1308 2.3536 41 1 2.1378 -6.6418 1.5740 42 1 1.1928 -4.9656 -0.0539 43 1 2.8815 -5.4067 -0.4098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826357915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = 153.109328 kcal Electronic energy + Delta-G solvation = -28154.242763 eV Core-core repulsion = 24239.062717 eV Total energy + Delta-G solvation = -3915.180045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.39518 -41.68611 -39.18362 -36.76217 -34.55052 -33.89855 -33.54706 -32.42104 -31.31134 -30.24260 -29.03299 -27.03754 -26.25629 -24.56109 -24.00368 -23.32647 -22.42453 -21.41782 -20.58513 -19.45681 -19.08981 -18.49215 -17.10869 -16.95373 -16.41581 -15.92366 -15.63892 -15.39645 -14.58899 -14.54768 -14.40241 -13.98689 -13.71915 -13.34653 -13.12621 -12.84441 -12.70875 -12.57457 -12.50466 -12.32122 -12.25738 -12.06182 -11.47920 -11.34778 -11.10290 -10.97950 -10.96874 -10.86805 -10.63974 -10.36874 -10.07967 -9.73490 -9.49475 -9.14295 -8.95222 -8.56832 -8.34414 -8.31403 -7.93037 -5.98477 -4.04932 1.01121 1.50293 1.69257 2.21839 2.52227 3.05135 3.32578 3.37730 3.40190 3.43733 3.56317 3.89824 4.22006 4.44360 4.68841 4.78524 4.87237 5.13537 5.28687 5.31212 5.34720 5.47276 5.51498 5.65356 5.82764 5.86973 5.92991 6.04859 6.14740 6.15385 6.34737 6.40719 6.44188 6.52902 6.67816 6.78392 6.90199 6.99259 7.07465 7.18405 7.33244 7.70175 7.88444 7.96574 8.08844 8.20135 8.44237 8.46552 8.97967 9.59949 11.06833 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010992 B = 0.003632 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.688625 B = 7706.667658 C = 9653.351276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.405 5.405 3 C 0.066 3.934 4 C -0.119 4.119 5 C 0.267 3.733 6 N -0.266 5.266 7 N -0.053 5.053 8 N -0.235 5.235 9 H 0.472 0.528 10 N -0.312 5.312 11 C -0.105 4.105 12 C -0.033 4.033 13 C 0.582 3.418 14 O -0.565 6.565 15 N -0.582 5.582 16 C 0.072 3.928 17 C -0.122 4.122 18 C 0.048 3.952 19 C -0.514 4.514 20 H 0.053 0.947 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.278 1.278 27 C -0.123 4.123 28 C 0.114 3.886 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.106 0.894 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 17.683 -8.946 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.077 5.077 3 C -0.075 4.075 4 C -0.129 4.129 5 C -0.013 4.013 6 N -0.139 5.139 7 N -0.048 5.048 8 N -0.081 5.081 9 H 0.325 0.675 10 N -0.164 5.164 11 C -0.131 4.131 12 C -0.145 4.145 13 C 0.370 3.630 14 O -0.447 6.447 15 N -0.312 5.312 16 C -0.049 4.049 17 C -0.160 4.160 18 C 0.030 3.970 19 C -0.552 4.552 20 H 0.072 0.928 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.718 3.282 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.204 1.204 27 C -0.161 4.161 28 C -0.008 4.008 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.196 0.804 33 H 0.189 0.811 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.124 0.876 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.464 17.613 -9.087 20.558 hybrid contribution -0.005 0.178 1.037 1.052 sum -5.469 17.790 -8.050 20.278 Atomic orbital electron populations 1.22216 0.75403 1.04538 1.04562 1.43631 1.07195 1.04722 1.52142 1.21758 0.89220 0.91905 1.04647 1.16313 0.87481 0.91387 1.17736 1.22813 0.92253 0.86697 0.99496 1.76156 1.01367 1.18451 1.17939 1.78932 1.21276 0.89853 1.14738 1.47653 1.01409 1.12083 1.46906 0.67455 1.74875 1.03520 1.13982 1.24043 1.21590 0.95973 0.93212 1.02314 1.19869 0.89832 0.88085 1.16680 1.16925 0.84587 0.83292 0.78174 1.90746 1.19410 1.83924 1.50570 1.47933 1.19173 1.06084 1.58037 1.23001 0.82541 1.02083 0.97240 1.22088 1.04263 0.97574 0.92079 1.18648 0.90163 0.92216 0.96015 1.21153 0.97409 1.32757 1.03915 0.92840 1.24947 0.95859 0.95337 0.97702 1.69822 1.02472 1.42071 1.38446 0.86701 0.77034 0.80122 0.84391 1.20352 1.21303 1.20407 1.22007 1.01232 0.98929 0.93902 1.21756 1.00564 0.79290 0.99150 0.89961 0.88627 0.89644 0.80421 0.81095 0.91447 0.88530 0.94346 0.87638 0.95373 0.92874 0.92957 0.92065 0.90246 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.25 59.85 0.61 1.31 16 2 N -0.41 -5.02 3.14 -120.43 -0.38 -5.39 16 3 C 0.07 0.73 11.30 -16.83 -0.19 0.54 16 4 C -0.12 -1.58 6.10 -105.30 -0.64 -2.22 16 5 C 0.27 3.57 8.18 -156.31 -1.28 2.29 16 6 N -0.27 -3.88 12.54 32.16 0.40 -3.48 16 7 N -0.05 -0.64 13.47 60.35 0.81 0.18 16 8 N -0.24 -2.05 7.90 60.35 0.48 -1.58 16 9 H 0.47 1.68 8.96 -340.37 -3.05 -1.37 16 10 N -0.31 -3.43 12.39 32.18 0.40 -3.03 16 11 C -0.10 -1.54 8.46 -39.18 -0.33 -1.87 16 12 C -0.03 -0.50 6.50 -82.38 -0.54 -1.03 16 13 C 0.58 10.25 7.52 -12.83 -0.10 10.16 16 14 O -0.56 -10.79 14.77 5.20 0.08 -10.71 16 15 N -0.58 -10.51 2.97 -174.03 -0.52 -11.02 16 16 C 0.07 1.32 5.16 -3.48 -0.02 1.30 16 17 C -0.12 -2.71 5.17 -26.38 -0.14 -2.85 16 18 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 19 C -0.51 -13.72 8.56 -34.44 -0.29 -14.02 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 22 N -0.89 -24.55 11.31 55.43 0.63 -23.92 16 23 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 28 C 0.11 2.05 6.44 -3.71 -0.02 2.03 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.08 7.22 -51.93 -0.37 0.70 16 31 H 0.08 0.52 8.12 -51.93 -0.42 0.09 16 32 H 0.18 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.17 2.53 5.68 -52.48 -0.30 2.23 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.63 3.69 -51.93 -0.19 1.44 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 2.63 6.03 -51.93 -0.31 2.32 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -32.64 353.43 -9.09 -41.73 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.94 Total: 0.37 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.36 Total: -4.44 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 1.82 Total: -48.25 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.64 -9.09 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826357915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.843 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds