Wall clock time and date at job start Tue Mar 31 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.70147 * 2 1 4 4 C 1.53192 * 109.58564 * 120.35277 * 2 1 3 5 5 C 1.53036 * 109.31236 * 174.42613 * 4 2 1 6 6 H 1.08998 * 109.46420 * 58.64334 * 5 4 2 7 7 N 1.46505 * 109.46078 * 178.61270 * 5 4 2 8 8 C 1.34775 * 120.00401 * 204.99777 * 7 5 4 9 9 O 1.21627 * 119.99465 * 359.97438 * 8 7 5 10 10 C 1.47314 * 120.00341 * 180.27704 * 8 7 5 11 11 C 1.39006 * 120.90513 * 359.72375 * 10 8 7 12 12 C 1.39709 * 119.29290 * 180.02562 * 11 10 8 13 13 C 1.35259 * 121.08159 * 0.02562 * 12 11 10 14 14 N 1.35716 * 121.56939 * 0.02562 * 13 12 11 15 15 N 1.40213 * 134.08817 * 179.97438 * 14 13 12 16 16 N 1.29019 * 106.95724 * 179.19671 * 15 14 13 17 17 N 1.28594 * 110.78776 * 0.71166 * 16 15 14 18 18 C 1.32042 * 110.21146 * 359.36061 * 17 16 15 19 19 C 1.53040 * 109.53701 * 298.63265 * 5 4 2 20 20 C 1.53185 * 109.31177 * 61.36474 * 19 5 4 21 21 N 1.46921 * 109.58640 * 239.64116 * 2 1 3 22 22 C 1.36930 * 120.63594 * 6.58463 * 21 2 1 23 23 H 1.08007 * 119.99790 * 330.88213 * 22 21 2 24 24 C 1.38808 * 120.00500 * 150.88577 * 22 21 2 25 25 N 1.31617 * 120.00094 * 160.76141 * 24 22 21 26 26 Si 1.86794 * 119.99819 * 340.75397 * 24 22 21 27 27 H 1.48508 * 109.47020 * 92.26033 * 26 24 22 28 28 H 1.48498 * 109.47437 * 212.25793 * 26 24 22 29 29 H 1.48499 * 109.47730 * 332.26143 * 26 24 22 30 30 H 1.08996 * 109.47662 * 299.65096 * 1 2 3 31 31 H 1.08998 * 109.47382 * 59.64790 * 1 2 3 32 32 H 1.08993 * 109.47491 * 179.64789 * 1 2 3 33 33 H 1.08999 * 109.50088 * 54.46657 * 4 2 1 34 34 H 1.09004 * 109.52262 * 294.39009 * 4 2 1 35 35 H 0.97000 * 119.99495 * 24.99904 * 7 5 4 36 36 H 1.08000 * 120.35406 * 0.02648 * 11 10 8 37 37 H 1.08000 * 119.46045 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.21775 * 179.97438 * 13 12 11 39 39 H 1.09000 * 109.49956 * 181.32301 * 19 5 4 40 40 H 1.09007 * 109.49731 * 301.41617 * 19 5 4 41 41 H 1.09004 * 109.58652 * 185.57544 * 20 19 5 42 42 H 1.08998 * 109.70138 * 65.22924 * 20 19 5 43 43 H 0.97006 * 120.00157 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8478 1.1702 6 1 4.0060 0.1474 1.0992 7 7 4.0651 -1.5155 2.3756 8 6 5.3293 -1.3020 2.7910 9 8 6.0571 -0.5552 2.1650 10 6 5.8317 -1.9781 3.9996 11 6 5.0164 -2.8357 4.7290 12 6 5.5274 -3.4588 5.8702 13 6 6.7993 -3.2402 6.2749 14 7 7.6290 -2.4101 5.5933 15 7 8.9586 -2.0005 5.7681 16 7 9.2376 -1.2023 4.7936 17 7 8.2192 -1.0487 4.0236 18 6 7.2030 -1.7688 4.4621 19 6 3.9568 -1.6656 -0.0633 20 6 3.4650 -0.9470 -1.3235 21 7 2.0225 -0.6996 -1.1944 22 6 1.1537 -1.1136 -2.1685 23 1 0.1365 -1.3699 -1.9114 24 6 1.5802 -1.2039 -3.4863 25 7 0.9074 -1.9380 -4.3469 26 14 3.1090 -0.2833 -4.0383 27 1 4.2945 -1.1677 -3.9050 28 1 2.9546 0.1270 -5.4571 29 1 3.2935 0.9226 -3.1916 30 1 -0.3634 0.5084 0.8930 31 1 -0.3634 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0063 33 1 1.6028 -1.7252 1.2915 34 1 1.7659 -0.1672 2.1371 35 1 3.4847 -2.1114 2.8746 36 1 3.9988 -3.0184 4.4167 37 1 4.8961 -4.1253 6.4392 38 1 7.1632 -3.7373 7.1619 39 1 5.0411 -1.7696 -0.1034 40 1 3.4982 -2.6528 -0.0050 41 1 3.6518 -1.5718 -2.1970 42 1 3.9901 0.0018 -1.4341 43 1 1.2053 -2.0008 -5.2680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947347721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:24 Heat of formation + Delta-G solvation = 119.006205 kcal Electronic energy + Delta-G solvation = -28026.884985 eV Core-core repulsion = 24110.226118 eV Total energy + Delta-G solvation = -3916.658868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.50267 -41.22921 -39.75792 -39.16672 -36.22599 -35.17303 -34.21330 -33.33207 -33.10171 -32.25968 -31.09529 -28.10050 -26.86456 -26.15168 -25.37294 -24.67864 -24.16774 -22.56859 -21.69124 -21.08347 -19.87791 -18.74380 -18.61075 -18.28207 -18.04786 -17.39459 -16.75405 -16.58089 -16.32970 -16.04993 -15.53886 -15.34306 -14.93917 -14.83736 -14.79025 -14.31390 -14.18622 -13.99401 -13.83822 -13.67889 -13.47772 -13.26681 -12.88191 -12.68977 -12.65922 -12.53384 -12.22479 -12.17666 -11.99313 -11.85241 -11.71738 -11.50633 -11.37956 -11.30961 -11.05201 -10.70479 -10.14949 -9.71884 -8.87688 -8.12427 -5.43454 -1.06688 -0.59273 0.57920 0.94729 1.28651 1.40149 1.46268 1.47101 1.90039 2.28633 2.43080 2.48829 2.83145 3.08444 3.30918 3.39243 3.59119 3.71683 3.83756 3.95808 4.00478 4.19889 4.24276 4.26694 4.36065 4.47567 4.54872 4.61205 4.68058 4.75162 4.76428 4.85940 4.95837 5.00279 5.06161 5.10159 5.12448 5.22830 5.36792 5.45926 5.53229 5.62691 5.95100 6.23499 6.50623 6.96515 7.15848 7.18429 7.68227 8.09643 9.06957 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021050 B = 0.002855 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.863481 B = 9806.504020 C =10523.150337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.161 3.839 3 H 0.030 0.970 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.063 0.937 7 N -0.693 5.693 8 C 0.557 3.443 9 O -0.562 6.562 10 C -0.137 4.137 11 C 0.027 3.973 12 C -0.112 4.112 13 C 0.118 3.882 14 N -0.306 5.306 15 N -0.122 5.122 16 N -0.041 5.041 17 N -0.349 5.349 18 C 0.252 3.748 19 C -0.130 4.130 20 C 0.124 3.876 21 N -0.614 5.614 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.030 4.030 25 N -0.956 5.956 26 Si 0.926 3.074 27 H -0.286 1.286 28 H -0.314 1.314 29 H -0.269 1.269 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.419 0.581 36 H 0.211 0.789 37 H 0.240 0.760 38 H 0.226 0.774 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.017 0.983 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -7.722 29.850 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 H 0.047 0.953 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.082 0.918 7 N -0.347 5.347 8 C 0.343 3.657 9 O -0.441 6.441 10 C -0.146 4.146 11 C 0.001 3.999 12 C -0.135 4.135 13 C -0.008 4.008 14 N -0.086 5.086 15 N -0.106 5.106 16 N -0.034 5.034 17 N -0.207 5.207 18 C -0.005 4.005 19 C -0.170 4.170 20 C -0.001 4.001 21 N -0.340 5.340 22 C -0.358 4.358 23 H 0.096 0.904 24 C -0.225 4.225 25 N -0.603 5.603 26 Si 0.757 3.243 27 H -0.214 1.214 28 H -0.243 1.243 29 H -0.194 1.194 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.259 0.741 36 H 0.228 0.772 37 H 0.256 0.744 38 H 0.242 0.758 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.035 0.965 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.183 -6.600 29.305 30.329 hybrid contribution 0.421 0.111 -1.214 1.289 sum 4.603 -6.489 28.091 29.196 Atomic orbital electron populations 1.21727 0.93801 1.01732 1.01343 1.20730 0.94789 0.93446 0.85472 0.95270 1.22208 0.91711 1.02988 0.98869 1.20714 0.95344 0.95428 0.82828 0.91829 1.45676 1.12157 1.48740 1.28083 1.17908 0.82474 0.81374 0.83944 1.90922 1.57225 1.38376 1.57529 1.20181 0.88240 1.06110 1.00110 1.22768 1.00878 0.85861 0.90352 1.21862 0.93251 1.01350 0.97005 1.23027 0.89773 0.89741 0.98239 1.49147 1.10814 1.30090 1.18532 1.82595 0.90131 1.17612 1.20240 1.77988 1.19431 1.08094 0.97870 1.75145 0.96721 1.24424 1.24435 1.23873 0.96627 0.92710 0.87310 1.22221 0.99576 1.00160 0.95059 1.21237 0.84914 0.96792 0.97198 1.44683 1.01734 1.66316 1.21225 1.18969 0.95558 1.35090 0.86147 0.90398 1.25774 0.99826 1.00355 0.96521 1.69902 1.43425 1.42125 1.04821 0.86241 0.81467 0.80663 0.75899 1.21368 1.24313 1.19445 0.89748 0.94483 0.92986 0.89759 0.87997 0.74108 0.77235 0.74389 0.75769 0.93110 0.90660 0.93368 0.96527 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 7.94 71.98 0.57 -3.40 16 2 C 0.16 5.41 3.50 44.97 0.16 5.57 16 3 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 4 C -0.12 -2.77 4.84 30.67 0.15 -2.62 16 5 C 0.16 4.36 2.41 45.02 0.11 4.47 16 6 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 7 N -0.69 -12.80 5.03 -445.77 -2.24 -15.04 16 8 C 0.56 13.90 7.74 86.63 0.67 14.57 16 9 O -0.56 -21.27 15.94 -4.12 -0.07 -21.34 16 10 C -0.14 -2.36 6.06 -18.63 -0.11 -2.47 16 11 C 0.03 0.05 9.63 22.81 0.22 0.27 16 12 C -0.11 0.42 9.92 21.94 0.22 0.63 16 13 C 0.12 0.40 11.15 83.40 0.93 1.33 16 14 N -0.31 -5.58 3.94 -188.68 -0.74 -6.32 16 15 N -0.12 -3.18 13.99 37.02 0.52 -2.66 16 16 N -0.04 -1.35 13.36 37.02 0.49 -0.86 16 17 N -0.35 -12.18 11.75 -52.05 -0.61 -12.79 16 18 C 0.25 6.35 7.85 135.75 1.07 7.42 16 19 C -0.13 -4.42 5.65 30.67 0.17 -4.24 16 20 C 0.12 5.40 4.20 86.36 0.36 5.76 16 21 N -0.61 -27.13 2.75 -675.25 -1.86 -28.98 16 22 C -0.23 -12.09 9.05 84.03 0.76 -11.33 16 23 H 0.08 4.33 6.39 -2.91 -0.02 4.31 16 24 C -0.03 -1.75 5.24 84.86 0.44 -1.30 16 25 N -0.96 -59.11 13.97 21.65 0.30 -58.81 16 26 Si 0.93 47.99 24.34 68.60 1.67 49.66 16 27 H -0.29 -14.51 6.63 99.48 0.66 -13.85 16 28 H -0.31 -16.61 7.11 99.48 0.71 -15.90 16 29 H -0.27 -13.71 6.63 99.48 0.66 -13.05 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.34 7.66 -2.39 -0.02 1.32 16 32 H 0.05 1.67 7.40 -2.39 -0.02 1.65 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.42 3.23 6.71 -92.71 -0.62 2.61 16 36 H 0.21 -1.52 6.49 -2.91 -0.02 -1.54 16 37 H 0.24 -3.66 8.06 -2.91 -0.02 -3.68 16 38 H 0.23 -1.16 8.06 -2.91 -0.02 -1.18 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.05 2.34 4.62 -2.38 -0.01 2.33 16 42 H 0.02 0.76 7.02 -2.39 -0.02 0.74 16 43 H 0.26 15.44 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -95.03 347.75 3.53 -91.50 By element: Atomic # 1 Polarization: -9.36 SS G_CDS: 0.35 Total: -9.01 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.72 Total: 14.66 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -4.14 Total: -125.47 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.07 Total: -21.34 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.67 Total: 49.66 kcal Total: -95.03 3.53 -91.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947347721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.507 kcal (2) G-P(sol) polarization free energy of solvation -95.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds