Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.58339 * 2 1 4 4 C 1.53185 * 109.58853 * 239.71297 * 2 1 3 5 5 C 1.53039 * 109.31500 * 185.43400 * 4 2 1 6 6 H 1.09002 * 109.45186 * 301.35004 * 5 4 2 7 7 N 1.46508 * 109.45947 * 181.38447 * 5 4 2 8 8 C 1.34777 * 119.99702 * 154.93234 * 7 5 4 9 9 O 1.21522 * 119.99941 * 359.97438 * 8 7 5 10 10 C 1.48119 * 119.99942 * 180.02562 * 8 7 5 11 11 C 1.39818 * 119.37446 * 179.72708 * 10 8 7 12 12 C 1.36968 * 119.60428 * 179.72803 * 11 10 8 13 13 C 1.39812 * 118.25620 * 0.56285 * 12 11 10 14 14 N 1.34648 * 135.00953 * 179.72299 * 13 12 11 15 15 N 1.28666 * 109.16367 * 179.97438 * 14 13 12 16 16 N 1.28767 * 111.84380 * 0.02562 * 15 14 13 17 17 H 0.97007 * 125.85814 * 179.97438 * 16 15 14 18 18 C 1.37246 * 108.28462 * 359.97438 * 16 15 14 19 19 N 1.31953 * 134.71149 * 179.97438 * 18 16 15 20 20 C 1.53039 * 109.53889 * 61.36671 * 5 4 2 21 21 C 1.53196 * 109.31136 * 298.63473 * 20 5 4 22 22 N 1.46925 * 109.70632 * 120.35094 * 2 1 3 23 23 C 1.36940 * 120.62791 * 353.48634 * 22 2 1 24 24 H 1.07998 * 120.00270 * 28.65147 * 23 22 2 25 25 C 1.38809 * 120.00164 * 208.64365 * 23 22 2 26 26 N 1.31625 * 119.99661 * 14.65419 * 25 23 22 27 27 Si 1.86794 * 120.00403 * 194.65711 * 25 23 22 28 28 H 1.48505 * 109.47432 * 89.99787 * 27 25 23 29 29 H 1.48507 * 109.47395 * 210.00060 * 27 25 23 30 30 H 1.48503 * 109.46830 * 329.99954 * 27 25 23 31 31 H 1.08995 * 109.47005 * 180.28929 * 1 2 3 32 32 H 1.09004 * 109.47069 * 300.28349 * 1 2 3 33 33 H 1.08999 * 109.47056 * 60.28480 * 1 2 3 34 34 H 1.09007 * 109.50007 * 65.48072 * 4 2 1 35 35 H 1.09005 * 109.49803 * 305.38752 * 4 2 1 36 36 H 0.96994 * 120.00103 * 334.93318 * 7 5 4 37 37 H 1.08000 * 120.19278 * 359.97438 * 11 10 8 38 38 H 1.08008 * 120.87070 * 180.21931 * 12 11 10 39 39 H 1.09002 * 109.49942 * 58.58357 * 20 5 4 40 40 H 1.08998 * 109.49697 * 178.68238 * 20 5 4 41 41 H 1.08993 * 109.58497 * 174.42049 * 21 20 5 42 42 H 1.09002 * 109.58264 * 294.85071 * 21 20 5 43 43 H 0.97000 * 119.99695 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5678 -0.8434 -1.1728 6 1 4.0044 0.1529 -1.1021 7 7 4.0654 -1.5097 -2.3789 8 6 5.3283 -1.2923 -2.7965 9 8 6.0540 -0.5432 -2.1728 10 6 5.8313 -1.9656 -4.0162 11 6 7.1418 -1.7262 -4.4408 12 6 7.6135 -2.3506 -5.5649 13 6 6.7511 -3.2045 -6.2590 14 7 6.8501 -3.9628 -7.3673 15 7 5.7316 -4.5664 -7.5673 16 7 4.8608 -4.2731 -6.6653 17 1 3.9532 -4.6125 -6.6199 18 6 5.4370 -3.3978 -5.7790 19 7 5.0287 -2.7780 -4.6880 20 6 3.9604 -1.6608 0.0600 21 6 3.4686 -0.9434 1.3211 22 7 2.0254 -0.6989 1.1936 23 6 1.1585 -1.1149 2.1686 24 1 0.1394 -1.3660 1.9139 25 6 1.5895 -1.2141 3.4844 26 7 2.7187 -0.6462 3.8515 27 14 0.5669 -2.1533 4.7340 28 1 0.9892 -3.5770 4.7495 29 1 0.7672 -1.5628 6.0818 30 1 -0.8687 -2.0669 4.3641 31 1 -0.3633 -1.0276 0.0052 32 1 -0.3633 0.5182 0.8875 33 1 -0.3633 0.5094 -0.8925 34 1 1.7638 -0.1656 -2.1372 35 1 1.6049 -1.7247 -1.2920 36 1 3.4861 -2.1073 -2.8769 37 1 7.7794 -1.0560 -3.8835 38 1 8.6235 -2.1832 -5.9093 39 1 3.5037 -2.6488 0.0020 40 1 5.0449 -1.7624 0.0988 41 1 3.6576 -1.5682 2.1940 42 1 3.9920 0.0066 1.4287 43 1 3.0201 -0.7158 4.7709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947369215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = 114.955260 kcal Electronic energy + Delta-G solvation = -27699.260914 eV Core-core repulsion = 23782.426384 eV Total energy + Delta-G solvation = -3916.834530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.83569 -40.45630 -38.87933 -37.58507 -34.91685 -34.58301 -32.59129 -32.24263 -31.68155 -30.99301 -29.47867 -26.56273 -26.09088 -24.84287 -24.21719 -23.20131 -22.20431 -21.49207 -20.23216 -19.59732 -19.22171 -18.82141 -18.00522 -17.06003 -16.37119 -16.05918 -15.56193 -15.17849 -15.05612 -14.60068 -13.98948 -13.95059 -13.72913 -13.53490 -13.39312 -13.30397 -12.85121 -12.80118 -12.66904 -12.25566 -12.13846 -11.63175 -11.26017 -11.15987 -10.95272 -10.94880 -10.69096 -10.54742 -10.33718 -10.15625 -10.06645 -9.93959 -9.77255 -9.72379 -9.53999 -9.42616 -8.79616 -8.44420 -6.67182 -5.78208 -3.22429 -0.34134 0.51197 1.64213 1.64658 2.50686 2.95901 3.27925 3.36794 3.37918 3.43515 3.44702 3.76695 3.90568 4.30924 4.43590 4.47586 4.91305 4.97161 5.21153 5.29063 5.34329 5.39673 5.44190 5.53575 5.73531 5.80401 5.94203 6.09195 6.12084 6.18774 6.28592 6.35263 6.38937 6.46895 6.59923 6.75030 6.78226 6.91669 6.99422 7.06888 7.36825 7.55949 7.63615 7.69440 7.80978 8.14177 8.45499 9.21174 9.84534 10.40788 11.30261 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002486 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.546356 B =11260.678274 C =11524.331990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.147 3.853 6 H 0.086 0.914 7 N -0.698 5.698 8 C 0.565 3.435 9 O -0.521 6.521 10 C 0.157 3.843 11 C -0.121 4.121 12 C -0.002 4.002 13 C -0.026 4.026 14 N -0.239 5.239 15 N 0.009 4.991 16 N -0.402 5.402 17 H 0.459 0.541 18 C 0.216 3.784 19 N -0.446 5.446 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.588 5.588 23 C -0.250 4.250 24 H 0.071 0.929 25 C 0.002 3.998 26 N -0.903 5.903 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.405 0.595 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.021 0.979 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -4.277 -20.068 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.045 3.955 6 H 0.104 0.896 7 N -0.347 5.347 8 C 0.348 3.652 9 O -0.396 6.396 10 C 0.003 3.997 11 C -0.145 4.145 12 C -0.033 4.033 13 C -0.153 4.153 14 N -0.116 5.116 15 N 0.026 4.974 16 N -0.134 5.134 17 H 0.308 0.692 18 C -0.028 4.028 19 N -0.163 5.163 20 C -0.188 4.188 21 C 0.048 3.952 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.548 5.548 27 Si 0.732 3.268 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.240 0.760 37 H 0.186 0.814 38 H 0.178 0.822 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.039 0.961 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.308 -4.672 -20.450 21.638 hybrid contribution -0.811 -0.485 1.024 1.393 sum 4.497 -5.157 -19.426 20.596 Atomic orbital electron populations 1.21792 0.95739 1.01452 1.00340 1.20349 0.93079 0.93602 0.86558 0.95463 1.22393 0.93419 1.01804 0.99793 1.21200 0.94546 0.96905 0.82878 0.89638 1.46242 1.12633 1.47303 1.28548 1.17674 0.82947 0.81707 0.82894 1.90844 1.56405 1.36629 1.55673 1.21463 0.91073 0.92812 0.94382 1.21804 0.95824 1.00342 0.96519 1.20547 0.99638 0.91079 0.91987 1.20685 0.95147 1.02655 0.96855 1.75415 1.13307 1.08613 1.14229 1.78116 0.94095 1.15657 1.09564 1.44690 1.15924 1.34310 1.18477 0.69205 1.19798 0.91514 0.97341 0.94134 1.66298 1.37286 1.07761 1.04969 1.22597 0.99844 0.99649 0.96666 1.20790 0.83140 0.97427 0.93885 1.44179 1.02999 1.64881 1.19065 1.19191 0.94743 1.37723 0.86334 0.91168 1.25091 0.97808 0.99814 0.96972 1.70008 1.22893 1.44828 1.17042 0.86307 0.79814 0.79732 0.80985 1.21546 1.21795 1.20489 0.92761 0.91849 0.94274 0.92584 0.91707 0.75976 0.81361 0.82182 0.92575 0.92739 0.88908 0.96083 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.95 37.16 0.30 -2.12 16 2 C 0.17 3.36 3.49 -67.60 -0.24 3.13 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.15 4.84 -26.62 -0.13 -2.28 16 5 C 0.15 2.44 2.42 -67.89 -0.16 2.28 16 6 H 0.09 1.56 7.57 -51.93 -0.39 1.17 16 7 N -0.70 -9.59 5.06 -54.62 -0.28 -9.87 16 8 C 0.57 7.91 7.77 -12.20 -0.09 7.82 16 9 O -0.52 -8.77 15.95 5.35 0.09 -8.69 16 10 C 0.16 1.79 6.74 -82.93 -0.56 1.23 16 11 C -0.12 -1.11 9.55 -39.45 -0.38 -1.48 16 12 C 0.00 -0.01 10.16 -39.45 -0.40 -0.42 16 13 C -0.03 -0.27 7.38 -84.91 -0.63 -0.89 16 14 N -0.24 -2.60 12.43 32.12 0.40 -2.20 16 15 N 0.01 0.09 13.28 60.35 0.80 0.89 16 16 N -0.40 -3.15 7.06 31.13 0.22 -2.93 16 17 H 0.46 1.91 8.96 -190.25 -1.71 0.21 16 18 C 0.22 2.18 8.56 -156.29 -1.34 0.84 16 19 N -0.45 -4.82 9.54 -8.91 -0.08 -4.90 16 20 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 21 C 0.17 4.07 5.29 -3.71 -0.02 4.05 16 22 N -0.59 -13.97 2.99 -164.78 -0.49 -14.47 16 23 C -0.25 -6.52 8.63 -15.06 -0.13 -6.65 16 24 H 0.07 1.78 6.20 -52.49 -0.33 1.45 16 25 C 0.00 0.04 4.97 -17.43 -0.09 -0.04 16 26 N -0.90 -25.74 11.09 55.49 0.62 -25.12 16 27 Si 0.90 21.27 29.58 -169.99 -5.03 16.25 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.05 0.97 7.41 -51.93 -0.38 0.58 16 32 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.41 4.83 7.91 -40.82 -0.32 4.51 16 37 H 0.17 1.33 7.61 -52.49 -0.40 0.93 16 38 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.09 2.45 6.02 -51.93 -0.31 2.14 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -31.55 354.41 -9.20 -40.74 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.76 Total: 2.45 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -4.02 Total: 2.52 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 1.18 Total: -58.61 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.55 -9.20 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.697 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds