Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.45975 * 2 1 4 4 C 1.53038 * 109.46221 * 119.96174 * 2 1 3 5 5 C 1.53199 * 109.31300 * 181.38553 * 4 2 1 6 6 N 1.46929 * 108.77358 * 305.36590 * 5 4 2 7 7 C 1.36934 * 120.63030 * 233.58615 * 6 5 4 8 8 H 1.08002 * 119.99993 * 152.63502 * 7 6 5 9 9 C 1.38814 * 119.99715 * 332.62944 * 7 6 5 10 10 N 1.31625 * 119.99348 * 159.34460 * 9 7 6 11 11 Si 1.86792 * 120.00486 * 339.34669 * 9 7 6 12 12 H 1.48512 * 109.47042 * 92.94076 * 11 9 7 13 13 H 1.48504 * 109.47716 * 212.94162 * 11 9 7 14 14 H 1.48497 * 109.47317 * 332.94250 * 11 9 7 15 15 C 1.46923 * 118.73699 * 53.61143 * 6 5 4 16 16 C 1.53045 * 109.46203 * 240.03297 * 2 1 3 17 17 H 1.08999 * 109.49640 * 298.59565 * 16 2 1 18 18 N 1.46504 * 109.49570 * 58.65833 * 16 2 1 19 19 C 1.34776 * 120.00062 * 204.99776 * 18 16 2 20 20 O 1.21617 * 119.99736 * 0.02562 * 19 18 16 21 21 C 1.47317 * 119.99992 * 179.97438 * 19 18 16 22 22 C 1.39004 * 120.90521 * 0.25828 * 21 19 18 23 23 C 1.39721 * 119.29223 * 180.21959 * 22 21 19 24 24 C 1.35262 * 121.07581 * 359.50641 * 23 22 21 25 25 N 1.35718 * 121.57418 * 0.25561 * 24 23 22 26 26 N 1.40209 * 134.08643 * 179.97438 * 25 24 23 27 27 N 1.29021 * 106.95934 * 180.02562 * 26 25 24 28 28 N 1.28593 * 110.78684 * 0.02562 * 27 26 25 29 29 C 1.32043 * 110.21708 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47370 * 299.96881 * 1 2 3 32 32 H 1.09004 * 109.47243 * 59.96761 * 1 2 3 33 33 H 1.08993 * 109.50252 * 301.33730 * 4 2 1 34 34 H 1.09003 * 109.49582 * 61.44014 * 4 2 1 35 35 H 1.08995 * 109.58609 * 65.15183 * 5 4 2 36 36 H 1.09003 * 109.58622 * 185.43920 * 5 4 2 37 37 H 0.97010 * 119.99168 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58502 * 186.59960 * 15 6 5 39 39 H 1.09005 * 109.58926 * 66.17836 * 15 6 5 40 40 H 0.97004 * 119.99831 * 25.00587 * 18 16 2 41 41 H 1.08001 * 120.35826 * 0.02562 * 22 21 19 42 42 H 1.07992 * 119.46273 * 179.78471 * 23 22 21 43 43 H 1.08000 * 119.21363 * 180.23232 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7206 1.2501 5 6 3.5714 -0.6884 1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9764 -2.2733 0.0000 8 1 5.0128 -2.9627 -0.8306 9 6 5.8506 -2.4256 1.0674 10 7 6.4272 -3.5887 1.2849 11 14 6.2086 -0.9803 2.1952 12 1 5.2799 -1.0144 3.3537 13 1 7.6093 -1.0663 2.6810 14 1 6.0210 0.2891 1.4478 15 6 3.5713 -0.6885 -1.2643 16 6 2.0398 -0.7208 -1.2501 17 1 1.6974 -1.7555 -1.2386 18 7 1.5255 -0.0488 -2.4460 19 6 1.3970 -0.7323 -3.6004 20 8 1.7077 -1.9071 -3.6492 21 6 0.8793 -0.0567 -4.8028 22 6 0.5225 1.2864 -4.7692 23 6 0.0308 1.8922 -5.9283 24 6 -0.0935 1.1959 -7.0812 25 7 0.2475 -0.1154 -7.1597 26 7 0.2281 -1.0686 -8.1878 27 7 0.6706 -2.1720 -7.6864 28 7 0.9699 -2.0215 -6.4449 29 6 0.7314 -0.7794 -6.0653 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8897 33 1 1.6573 -0.2206 2.1398 34 1 1.6979 -1.7556 1.2383 35 1 3.9143 0.3411 1.3672 36 1 3.9417 -1.2823 2.0999 37 1 7.0385 -3.6950 2.0307 38 1 3.9416 -1.2845 -2.0984 39 1 3.9142 0.3410 -1.3674 40 1 1.2774 0.8882 -2.4069 41 1 0.6214 1.8548 -3.8562 42 1 -0.2505 2.9346 -5.9044 43 1 -0.4735 1.6952 -7.9602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966357027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = 149.035906 kcal Electronic energy + Delta-G solvation = -28273.917329 eV Core-core repulsion = 24358.560647 eV Total energy + Delta-G solvation = -3915.356682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.64074 -40.19790 -38.87618 -37.86911 -34.80606 -34.31750 -33.19908 -32.34555 -31.43115 -31.09717 -29.28919 -27.69471 -25.83149 -24.67578 -24.12501 -23.61307 -22.57114 -21.35419 -20.82286 -19.86583 -18.98890 -17.95268 -17.71968 -17.16903 -16.82474 -16.22685 -15.71184 -15.21618 -15.03480 -14.57813 -14.13841 -14.01555 -13.86581 -13.65621 -13.43280 -13.38467 -13.17974 -12.76944 -12.72034 -12.67604 -12.24116 -12.14132 -11.80928 -11.67287 -11.34067 -11.20832 -10.99875 -10.92335 -10.71302 -10.64712 -10.17098 -10.07116 -9.90713 -9.72169 -9.45807 -9.14816 -9.00388 -8.54206 -6.98350 -5.91590 -3.28772 -0.44529 0.09613 1.26313 1.83654 2.21158 2.84926 3.17951 3.18851 3.31036 3.47820 3.50311 3.57488 3.86886 4.02793 4.36613 4.53849 4.60065 4.85567 4.87439 4.96745 5.03707 5.05126 5.11845 5.17498 5.18493 5.39684 5.42982 5.67211 5.74754 5.76026 5.86485 5.87933 5.96714 6.05981 6.18970 6.30060 6.40312 6.42947 6.56222 6.62603 6.71779 6.89709 7.43941 7.97428 8.10874 8.16999 8.37269 8.96340 9.73718 10.08287 11.24299 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.003129 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.582172 B = 8947.307412 C = 9780.462658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.127 4.127 5 C 0.121 3.879 6 N -0.600 5.600 7 C -0.260 4.260 8 H 0.088 0.912 9 C 0.024 3.976 10 N -0.906 5.906 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.143 3.857 16 C 0.133 3.867 17 H 0.095 0.905 18 N -0.713 5.713 19 C 0.554 3.446 20 O -0.488 6.488 21 C -0.088 4.088 22 C -0.025 4.025 23 C -0.144 4.144 24 C 0.125 3.875 25 N -0.310 5.310 26 N -0.109 5.109 27 N -0.007 5.007 28 N -0.284 5.284 29 C 0.271 3.729 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.392 0.608 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.773 19.214 -10.933 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.323 5.323 7 C -0.388 4.388 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.549 5.549 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.197 1.197 15 C 0.016 3.984 16 C 0.028 3.972 17 H 0.113 0.887 18 N -0.365 5.365 19 C 0.337 3.663 20 O -0.361 6.361 21 C -0.097 4.097 22 C -0.051 4.051 23 C -0.167 4.167 24 C -0.002 4.002 25 N -0.090 5.090 26 N -0.092 5.092 27 N 0.000 5.000 28 N -0.140 5.140 29 C 0.013 3.987 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.227 0.773 41 H 0.180 0.820 42 H 0.192 0.808 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.327 16.891 -11.973 26.998 hybrid contribution 0.033 2.183 1.060 2.427 sum -17.294 19.073 -10.912 27.964 Atomic orbital electron populations 1.21851 0.95465 1.02029 1.00864 1.21310 0.95066 0.99585 0.95101 0.91241 1.22080 0.98330 1.00777 0.95452 1.21409 0.91695 0.96980 0.90322 1.44274 1.48606 1.40497 0.98971 1.18966 1.09573 1.02670 1.07582 0.89474 1.25272 0.97448 0.96655 0.98127 1.69856 1.32490 1.21971 1.30575 0.86954 0.76310 0.84839 0.80546 1.21631 1.23196 1.19662 1.21227 0.90129 0.96870 0.90183 1.21831 0.96517 0.97535 0.81347 0.88659 1.45914 1.66472 1.13979 1.10165 1.17397 0.79789 0.86873 0.82257 1.90990 1.46850 1.14680 1.83532 1.20479 1.05229 0.93118 0.90886 1.22003 0.91267 0.92189 0.99664 1.20999 1.02735 1.02183 0.90788 1.21773 0.96937 0.80016 1.01462 1.49042 1.39766 1.10592 1.09634 1.82814 1.26519 0.92625 1.07197 1.78092 1.04654 1.15037 1.02248 1.75365 1.22628 1.12304 1.03752 1.23657 0.95781 0.89600 0.89703 0.92543 0.92771 0.93266 0.92151 0.91264 0.95666 0.90693 0.92767 0.91212 0.95942 0.77321 0.81971 0.80848 0.79948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.02 37.15 0.34 -1.14 16 2 C -0.09 -1.19 2.27 -90.58 -0.21 -1.40 16 3 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 4 C -0.13 -2.03 5.36 -26.61 -0.14 -2.17 16 5 C 0.12 2.51 4.20 -3.71 -0.02 2.50 16 6 N -0.60 -14.06 2.77 -172.31 -0.48 -14.54 16 7 C -0.26 -7.37 10.04 -15.06 -0.15 -7.52 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 10 N -0.91 -28.14 13.97 55.49 0.78 -27.36 16 11 Si 0.88 22.12 24.34 -169.99 -4.14 17.98 16 12 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 13 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 14 H -0.27 -6.60 6.63 56.52 0.37 -6.23 16 15 C 0.14 2.79 6.09 -3.71 -0.02 2.77 16 16 C 0.13 2.04 2.07 -67.81 -0.14 1.90 16 17 H 0.10 1.78 7.58 -51.93 -0.39 1.39 16 18 N -0.71 -8.14 4.32 -54.80 -0.24 -8.38 16 19 C 0.55 7.71 7.74 -12.57 -0.10 7.61 16 20 O -0.49 -9.56 15.94 5.26 0.08 -9.48 16 21 C -0.09 -0.92 6.06 -102.71 -0.62 -1.54 16 22 C -0.03 -0.12 9.63 -38.74 -0.37 -0.49 16 23 C -0.14 -0.34 9.92 -40.09 -0.40 -0.74 16 24 C 0.13 0.60 11.15 -16.89 -0.19 0.41 16 25 N -0.31 -3.26 3.94 -10.99 -0.04 -3.31 16 26 N -0.11 -1.46 13.99 60.35 0.84 -0.61 16 27 N -0.01 -0.12 13.36 60.35 0.81 0.69 16 28 N -0.28 -4.88 11.75 32.20 0.38 -4.50 16 29 C 0.27 3.64 7.85 -154.52 -1.21 2.43 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.40 7.36 -51.93 -0.38 0.02 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.51 7.07 -51.93 -0.37 0.14 16 36 H 0.08 1.73 4.50 -51.93 -0.23 1.50 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.07 1.53 7.93 -51.93 -0.41 1.11 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.39 2.75 6.41 -40.82 -0.26 2.48 16 41 H 0.16 0.18 6.49 -52.49 -0.34 -0.16 16 42 H 0.17 -0.33 8.06 -52.49 -0.42 -0.76 16 43 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -38.73 350.04 -5.44 -44.18 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.38 Total: -3.15 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.32 Total: 3.21 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 2.05 Total: -58.01 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.73 -5.44 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966357027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.212 kcal (2) G-P(sol) polarization free energy of solvation -38.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds