Wall clock time and date at job start Tue Mar 31 2020 05:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47113 * 2 1 4 4 N 1.46502 * 109.47206 * 239.99806 * 2 1 3 5 5 C 1.34773 * 119.99967 * 85.00233 * 4 2 1 6 6 O 1.21568 * 119.99986 * 359.97438 * 5 4 2 7 7 C 1.47722 * 120.00168 * 180.02562 * 5 4 2 8 8 C 1.40113 * 120.35156 * 359.97438 * 7 5 4 9 9 N 1.31258 * 121.15257 * 179.97438 * 8 7 5 10 10 C 1.32721 * 121.79841 * 0.03059 * 9 8 7 11 11 C 1.40779 * 120.67895 * 359.97438 * 10 9 8 12 12 C 1.39433 * 120.35040 * 179.72556 * 7 5 4 13 13 N 1.35337 * 107.75598 * 180.02562 * 11 10 9 14 14 N 1.28669 * 109.99687 * 359.97438 * 13 11 10 15 15 N 1.37119 * 133.40545 * 179.97438 * 10 9 8 16 16 C 1.46504 * 126.58611 * 0.02562 * 15 10 9 17 17 C 1.52998 * 109.46803 * 119.99781 * 2 1 3 18 18 C 1.53943 * 113.74357 * 281.68181 * 17 2 1 19 19 N 1.47582 * 86.11609 * 222.04679 * 18 17 2 20 20 C 1.36937 * 134.49158 * 204.63235 * 19 18 17 21 21 H 1.08001 * 119.99817 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00375 * 0.02562 * 20 19 18 23 23 N 1.31621 * 119.99480 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00323 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46896 * 89.99533 * 24 22 20 26 26 H 1.48500 * 109.47152 * 209.99943 * 24 22 20 27 27 H 1.48503 * 109.46860 * 329.99956 * 24 22 20 28 28 C 1.47578 * 91.01596 * 24.63962 * 19 18 17 29 29 H 1.09002 * 109.46814 * 60.04129 * 1 2 3 30 30 H 1.09006 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47293 * 300.03862 * 1 2 3 32 32 H 0.96997 * 120.00273 * 265.00111 * 4 2 1 33 33 H 1.07999 * 119.42521 * 359.97438 * 8 7 5 34 34 H 1.07994 * 120.95361 * 359.97438 * 12 7 5 35 35 H 1.08994 * 109.47706 * 89.99878 * 16 15 10 36 36 H 1.09005 * 109.46505 * 210.00027 * 16 15 10 37 37 H 1.08998 * 109.47496 * 329.99332 * 16 15 10 38 38 H 1.09000 * 112.94445 * 53.41537 * 17 2 1 39 39 H 1.08995 * 113.76838 * 336.34913 * 18 17 2 40 40 H 1.09000 * 113.77275 * 107.75077 * 18 17 2 41 41 H 0.96998 * 119.99505 * 180.02562 * 23 22 20 42 42 H 1.08997 * 113.76973 * 221.05279 * 28 19 18 43 43 H 1.09001 * 113.77092 * 89.65687 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8576 1.1611 -2.4118 7 6 2.6390 -0.7148 -3.5634 8 6 2.9743 -2.0742 -3.5088 9 7 3.4124 -2.7087 -4.5710 10 6 3.5585 -2.0974 -5.7400 11 6 3.2442 -0.7324 -5.8811 12 6 2.7696 -0.0278 -4.7696 13 7 3.4872 -0.3836 -7.1660 14 7 3.9196 -1.4013 -7.8240 15 7 3.9858 -2.5144 -6.9744 16 6 4.4260 -3.8642 -7.3361 17 6 2.0399 -0.7212 1.2493 18 6 1.9775 0.1342 2.5277 19 7 3.3097 -0.4179 2.8417 20 6 4.0192 -0.6143 3.9963 21 1 5.0066 -1.0500 3.9558 22 6 3.4695 -0.2534 5.2188 23 7 2.2664 0.2781 5.2680 24 14 4.4372 -0.5220 6.7939 25 1 5.2529 0.6843 7.0855 26 1 3.4969 -0.7672 7.9168 27 1 5.3312 -1.6966 6.6313 28 6 3.5700 -0.6730 1.4117 29 1 -0.3633 0.5132 -0.8904 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5144 0.8896 32 1 2.2491 -1.6318 -1.1526 33 1 2.8706 -2.6092 -2.5764 34 1 2.5147 1.0191 -4.8430 35 1 3.5699 -4.4467 -7.6762 36 1 5.1648 -3.8034 -8.1352 37 1 4.8710 -4.3466 -6.4659 38 1 1.6175 -1.7192 1.3659 39 1 1.9802 1.2076 2.3386 40 1 1.1987 -0.1743 3.2251 41 1 1.8824 0.5306 6.1222 42 1 4.0627 -1.6258 1.2180 43 1 4.0405 0.1634 0.8947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970167142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:24 Heat of formation + Delta-G solvation = 152.608216 kcal Electronic energy + Delta-G solvation = -27098.377058 eV Core-core repulsion = 23183.175283 eV Total energy + Delta-G solvation = -3915.201775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75731 -40.29387 -38.77975 -37.92706 -35.33694 -34.95357 -32.65808 -32.27613 -31.49595 -30.06114 -28.15193 -27.50584 -25.53927 -24.87345 -24.52585 -23.85422 -21.89476 -21.66393 -20.72340 -19.53696 -18.66457 -18.20517 -17.34886 -16.89371 -16.73885 -16.41908 -15.81220 -15.07812 -14.80087 -14.53408 -14.31788 -14.09194 -13.97981 -13.76007 -13.52140 -13.46717 -13.40639 -13.13557 -12.89358 -12.36476 -12.12630 -12.10348 -11.64228 -11.43932 -11.39960 -11.24869 -10.91223 -10.71873 -10.47857 -10.38616 -10.01264 -9.85339 -9.72422 -9.70788 -9.45617 -9.35807 -8.95069 -8.80703 -6.89447 -5.78562 -3.10710 -0.20999 0.23155 1.33004 1.64976 2.54692 2.90688 3.33000 3.35357 3.38127 3.42915 3.44868 3.68783 3.85890 4.10953 4.20580 4.43595 4.48270 4.59853 4.78642 4.90409 4.93618 5.08849 5.13561 5.30453 5.36017 5.40999 5.51182 5.60756 5.66035 5.77793 5.90186 5.94544 6.03157 6.22603 6.32245 6.40780 6.50642 6.59482 6.73865 7.02265 7.20521 7.33662 7.36777 7.44938 7.54733 7.96970 8.10987 9.03378 9.69416 10.58090 11.38642 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.002234 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.825975 B =12530.096557 C =13250.313101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.091 0.909 4 N -0.710 5.710 5 C 0.568 3.432 6 O -0.532 6.532 7 C -0.204 4.204 8 C 0.213 3.787 9 N -0.486 5.486 10 C 0.287 3.713 11 C -0.074 4.074 12 C 0.083 3.917 13 N -0.196 5.196 14 N 0.010 4.990 15 N -0.385 5.385 16 C 0.101 3.899 17 C -0.148 4.148 18 C 0.176 3.824 19 N -0.612 5.612 20 C -0.223 4.223 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.124 3.876 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.397 0.603 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -8.579 -23.439 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.109 0.891 4 N -0.361 5.361 5 C 0.353 3.647 6 O -0.409 6.409 7 C -0.213 4.213 8 C 0.039 3.961 9 N -0.200 5.200 10 C 0.043 3.957 11 C -0.200 4.200 12 C 0.052 3.948 13 N -0.076 5.076 14 N 0.028 4.972 15 N -0.181 5.181 16 C -0.040 4.040 17 C -0.168 4.168 18 C 0.050 3.950 19 N -0.338 5.338 20 C -0.351 4.351 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.002 4.002 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.232 0.768 33 H 0.197 0.803 34 H 0.184 0.816 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.245 -8.203 -24.619 25.951 hybrid contribution 0.439 -0.239 1.716 1.787 sum 0.194 -8.442 -22.903 24.410 Atomic orbital electron populations 1.22119 0.95174 1.01937 1.02471 1.21198 0.93959 0.97585 0.82587 0.89101 1.46046 1.66476 1.13955 1.09606 1.17673 0.78075 0.86458 0.82527 1.90814 1.50215 1.15161 1.84697 1.20850 1.08950 0.95867 0.95629 1.23105 0.87398 0.90279 0.95342 1.66649 1.18034 1.38652 0.96673 1.19556 0.96840 0.90982 0.88311 1.20385 1.11740 0.93799 0.94090 1.21092 0.85811 1.00780 0.87153 1.74888 1.09944 1.19713 1.03057 1.81774 1.14588 0.87201 1.13591 1.50007 1.51284 1.11661 1.05186 1.22110 1.01675 0.76459 1.03763 1.23887 0.97608 1.00847 0.94469 1.22192 0.89703 0.93867 0.89255 1.45940 1.16444 1.71769 0.99654 1.19011 0.98430 1.34853 0.82789 0.90318 1.24783 0.97059 1.01118 0.97509 1.69803 1.15321 1.47265 1.24436 0.86131 0.78783 0.77793 0.83113 1.21624 1.21613 1.20645 1.22558 0.93012 0.97733 0.86914 0.92696 0.92642 0.90914 0.76778 0.80327 0.81626 0.89685 0.88286 0.88234 0.89165 0.95399 0.90648 0.93606 0.94085 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.44 37.16 0.35 -1.65 16 2 C 0.15 2.08 2.29 -67.93 -0.16 1.92 16 3 H 0.09 1.47 7.48 -51.93 -0.39 1.08 16 4 N -0.71 -7.77 4.90 -54.79 -0.27 -8.04 16 5 C 0.57 6.83 7.74 -12.39 -0.10 6.74 16 6 O -0.53 -8.33 16.06 5.31 0.09 -8.25 16 7 C -0.20 -2.02 5.88 -104.87 -0.62 -2.63 16 8 C 0.21 1.75 10.69 -17.09 -0.18 1.56 16 9 N -0.49 -4.67 10.37 -12.03 -0.12 -4.80 16 10 C 0.29 3.03 8.05 -155.93 -1.26 1.77 16 11 C -0.07 -0.84 7.27 -84.74 -0.62 -1.46 16 12 C 0.08 0.86 9.75 -38.51 -0.38 0.49 16 13 N -0.20 -2.37 12.40 32.17 0.40 -1.97 16 14 N 0.01 0.11 13.71 60.35 0.83 0.93 16 15 N -0.39 -3.56 4.10 -67.18 -0.28 -3.84 16 16 C 0.10 0.46 11.54 59.85 0.69 1.15 16 17 C -0.15 -2.43 3.36 -89.70 -0.30 -2.73 16 18 C 0.18 3.89 6.98 -2.98 -0.02 3.87 16 19 N -0.61 -15.17 3.70 -177.92 -0.66 -15.83 16 20 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -26.86 11.38 55.49 0.63 -26.22 16 24 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.12 2.35 8.37 -2.98 -0.02 2.32 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.40 3.19 6.64 -40.82 -0.27 2.92 16 33 H 0.18 0.89 6.39 -52.49 -0.34 0.55 16 34 H 0.17 1.64 7.71 -52.49 -0.40 1.23 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 40 H 0.08 1.85 7.15 -51.93 -0.37 1.48 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -34.79 367.79 -7.26 -42.05 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.53 Total: -1.14 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.86 Total: 4.70 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.53 Total: -59.77 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.79 -7.26 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970167142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.659 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds