Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21551 * 119.99726 * 359.97438 * 5 4 2 7 7 C 1.47875 * 120.00506 * 179.97438 * 5 4 2 8 8 C 1.39454 * 121.11418 * 359.97438 * 7 5 4 9 9 C 1.38619 * 119.37741 * 180.02562 * 8 7 5 10 10 N 1.31585 * 121.63713 * 0.02562 * 9 8 7 11 11 C 1.32205 * 121.86378 * 359.97438 * 10 9 8 12 12 C 1.40869 * 121.11685 * 179.72237 * 7 5 4 13 13 N 1.34390 * 135.14550 * 0.77113 * 12 7 5 14 14 N 1.28694 * 109.15244 * 179.44565 * 13 12 7 15 15 N 1.28776 * 111.75854 * 359.73733 * 14 13 12 16 16 C 1.46501 * 125.86935 * 180.02562 * 15 14 13 17 17 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 18 18 C 1.53497 * 114.20384 * 299.99367 * 17 2 1 19 19 N 1.47070 * 87.98301 * 87.52522 * 18 17 2 20 20 C 1.36932 * 136.05620 * 207.08686 * 19 18 17 21 21 H 1.08001 * 120.00168 * 7.92391 * 20 19 18 22 22 C 1.38807 * 120.00154 * 187.92753 * 20 19 18 23 23 N 1.31620 * 120.00181 * 195.15567 * 22 20 19 24 24 Si 1.86800 * 119.99868 * 15.15620 * 22 20 19 25 25 H 1.48503 * 109.47270 * 270.00075 * 24 22 20 26 26 H 1.48502 * 109.47339 * 30.00381 * 24 22 20 27 27 H 1.48506 * 109.47014 * 149.99865 * 24 22 20 28 28 C 1.47068 * 87.88415 * 27.33811 * 19 18 17 29 29 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 32 32 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 33 33 H 1.08007 * 120.30791 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.17790 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46689 * 269.97303 * 16 15 14 36 36 H 1.09001 * 109.46859 * 29.97007 * 16 15 14 37 37 H 1.09004 * 109.47116 * 149.97458 * 16 15 14 38 38 H 1.09008 * 113.41028 * 166.80073 * 17 2 1 39 39 H 1.08996 * 113.46841 * 332.74047 * 18 17 2 40 40 H 1.08998 * 113.51535 * 202.31022 * 18 17 2 41 41 H 0.97002 * 120.00096 * 354.91189 * 23 22 20 42 42 H 1.09005 * 113.46482 * 87.44223 * 28 19 18 43 43 H 1.09000 * 113.46807 * 217.87726 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1609 -2.4118 7 6 2.6404 -0.7153 -3.5644 8 6 2.9797 -2.0674 -3.5279 9 6 3.4390 -2.6847 -4.6810 10 7 3.5644 -2.0261 -5.8133 11 6 3.2593 -0.7436 -5.9122 12 6 2.7785 -0.0369 -4.7912 13 7 2.5705 1.2223 -5.2123 14 7 2.8743 1.3059 -6.4601 15 7 3.2861 0.1789 -6.9276 16 6 3.7113 -0.0745 -8.3065 17 6 2.0400 -0.7214 1.2493 18 6 1.5899 -0.0846 2.5714 19 7 0.3745 -0.9091 2.4946 20 6 -0.9129 -0.8126 2.9512 21 1 -1.2551 0.1019 3.4126 22 6 -1.7781 -1.8901 2.8209 23 7 -3.0736 -1.7165 2.9761 24 14 -1.1040 -3.5868 2.4255 25 1 -1.0532 -3.7683 0.9525 26 1 0.2639 -3.7194 2.9881 27 1 -1.9868 -4.6215 3.0217 28 6 1.1519 -1.8859 1.7172 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 2.8862 -2.6282 -2.6096 34 1 3.7005 -3.7320 -4.6491 35 1 2.8518 -0.3859 -8.9003 36 1 4.1342 0.8366 -8.7295 37 1 4.4639 -0.8629 -8.3156 38 1 3.1026 -0.9610 1.2076 39 1 1.3946 0.9849 2.4938 40 1 2.2319 -0.3356 3.4158 41 1 -3.4174 -0.8529 3.2536 42 1 1.6789 -2.6124 2.3358 43 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970338243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = 178.091489 kcal Electronic energy + Delta-G solvation = -28018.119025 eV Core-core repulsion = 24104.022288 eV Total energy + Delta-G solvation = -3914.096737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.65621 -40.30963 -39.34576 -38.46412 -35.36053 -34.70053 -32.91136 -32.30859 -31.14102 -29.78379 -28.32428 -27.97498 -25.90604 -25.38437 -24.18981 -23.90208 -22.68503 -21.04211 -20.37897 -19.26588 -18.97093 -17.92308 -17.67269 -17.34728 -17.30578 -15.94754 -15.67747 -15.27748 -15.13690 -14.83743 -14.76893 -14.16759 -13.99041 -13.74308 -13.55549 -13.35598 -13.28474 -13.08308 -12.55798 -12.51644 -11.90826 -11.81477 -11.71881 -11.39515 -11.31039 -11.19420 -10.76748 -10.54908 -10.39536 -10.31780 -10.07199 -9.70882 -9.57722 -9.43724 -9.28956 -9.17357 -8.86752 -8.64626 -7.13524 -6.29291 -3.21524 -0.24652 0.53092 1.55993 1.93116 2.68154 2.94290 3.30870 3.35677 3.42874 3.44389 3.59215 3.88303 4.00348 4.21740 4.23932 4.55765 4.56988 4.57725 4.76636 4.84368 4.89164 5.00003 5.10476 5.19871 5.22393 5.41099 5.45489 5.65924 5.78124 5.86795 5.99802 6.02068 6.18422 6.20696 6.29573 6.37824 6.42093 6.58957 6.78046 6.92617 7.11776 7.12955 7.31046 7.53111 7.93679 8.20733 8.25255 8.98157 9.51459 10.38020 11.20335 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.002864 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.931399 B = 9772.789176 C =10158.429321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.173 3.827 3 H 0.087 0.913 4 N -0.712 5.712 5 C 0.549 3.451 6 O -0.501 6.501 7 C -0.005 4.005 8 C -0.143 4.143 9 C 0.159 3.841 10 N -0.459 5.459 11 C 0.208 3.792 12 C 0.003 3.997 13 N -0.213 5.213 14 N -0.007 5.007 15 N -0.312 5.312 16 C 0.091 3.909 17 C -0.146 4.146 18 C 0.127 3.873 19 N -0.619 5.619 20 C -0.300 4.300 21 H 0.081 0.919 22 C -0.023 4.023 23 N -0.933 5.933 24 Si 1.060 2.940 25 H -0.294 1.294 26 H -0.282 1.282 27 H -0.297 1.297 28 C 0.103 3.897 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.397 0.603 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.262 0.738 42 H 0.045 0.955 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.442 -3.632 -19.583 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.070 3.930 3 H 0.105 0.895 4 N -0.364 5.364 5 C 0.333 3.667 6 O -0.375 6.375 7 C -0.021 4.021 8 C -0.167 4.167 9 C -0.013 4.013 10 N -0.173 5.173 11 C -0.034 4.034 12 C -0.126 4.126 13 N -0.087 5.087 14 N 0.012 4.988 15 N -0.113 5.113 16 C -0.049 4.049 17 C -0.166 4.166 18 C 0.000 4.000 19 N -0.347 5.347 20 C -0.426 4.426 21 H 0.099 0.901 22 C -0.223 4.223 23 N -0.575 5.575 24 Si 0.892 3.108 25 H -0.222 1.222 26 H -0.209 1.209 27 H -0.225 1.225 28 C -0.022 4.022 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.231 0.769 33 H 0.177 0.823 34 H 0.199 0.801 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.529 -3.117 -21.041 27.563 hybrid contribution 0.534 0.199 1.246 1.370 sum 18.064 -2.917 -19.796 26.957 Atomic orbital electron populations 1.22173 0.92829 1.03250 1.02253 1.20692 0.95683 0.95791 0.80857 0.89544 1.46072 1.66672 1.13924 1.09721 1.17840 0.79346 0.86892 0.82615 1.90878 1.47784 1.14725 1.84078 1.19786 0.97211 0.93186 0.91943 1.22443 0.99456 0.93427 1.01379 1.22824 0.92984 0.99929 0.85579 1.66267 1.17021 1.05000 1.28981 1.19798 1.03861 0.91330 0.88376 1.20130 1.05010 0.92706 0.94797 1.75585 1.16647 1.15952 1.00481 1.78284 1.09241 1.05084 1.06230 1.47041 1.47792 1.05688 1.10795 1.22285 1.02337 1.04853 0.75438 1.23244 0.98348 0.99719 0.95243 1.22319 0.88539 0.96427 0.92684 1.46306 1.05074 1.20679 1.62677 1.20067 0.83085 1.00426 1.39006 0.90101 1.25705 0.94217 1.02277 1.00067 1.70888 1.10941 1.27348 1.48298 0.83809 0.74661 0.76363 0.75943 1.22218 1.20853 1.22474 1.22776 0.92037 0.92954 0.94474 0.94483 0.92135 0.88810 0.76872 0.82315 0.80057 0.89062 0.87763 0.87945 0.90336 0.93380 0.94346 0.92810 0.93788 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.06 37.16 0.30 -2.59 16 2 C 0.17 2.78 2.76 -67.92 -0.19 2.59 16 3 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 4 N -0.71 -9.50 5.04 -54.74 -0.28 -9.78 16 5 C 0.55 8.36 7.76 -12.32 -0.10 8.27 16 6 O -0.50 -9.77 15.93 5.32 0.08 -9.68 16 7 C 0.00 -0.06 5.92 -104.50 -0.62 -0.68 16 8 C -0.14 -1.15 9.61 -38.99 -0.37 -1.52 16 9 C 0.16 1.12 11.14 -17.52 -0.20 0.92 16 10 N -0.46 -4.47 10.35 -12.38 -0.13 -4.59 16 11 C 0.21 2.49 8.08 -156.20 -1.26 1.22 16 12 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 13 N -0.21 -3.49 11.92 32.23 0.38 -3.10 16 14 N -0.01 -0.09 13.07 60.35 0.79 0.70 16 15 N -0.31 -3.33 3.79 -67.22 -0.26 -3.59 16 16 C 0.09 0.45 11.41 59.85 0.68 1.13 16 17 C -0.15 -2.24 4.25 -89.97 -0.38 -2.63 16 18 C 0.13 2.32 7.86 -8.50 -0.07 2.25 16 19 N -0.62 -13.99 2.02 -184.60 -0.37 -14.36 16 20 C -0.30 -8.15 9.87 -15.06 -0.15 -8.30 16 21 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 22 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 23 N -0.93 -28.82 13.70 55.49 0.76 -28.06 16 24 Si 1.06 25.47 25.51 -169.99 -4.34 21.13 16 25 H -0.29 -6.69 6.97 56.52 0.39 -6.30 16 26 H -0.28 -6.21 5.66 56.52 0.32 -5.89 16 27 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 28 C 0.10 1.94 4.60 -8.37 -0.04 1.90 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.27 6.31 -51.93 -0.33 0.95 16 31 H 0.09 2.09 5.93 -51.93 -0.31 1.78 16 32 H 0.40 3.96 6.75 -40.82 -0.28 3.68 16 33 H 0.16 0.73 6.53 -52.48 -0.34 0.39 16 34 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 42 H 0.04 0.81 7.02 -51.93 -0.36 0.45 16 43 H 0.05 1.03 4.82 -51.93 -0.25 0.78 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -37.41 351.62 -6.43 -43.85 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.31 Total: 0.91 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.07 Total: 1.27 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.90 Total: -62.78 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.34 Total: 21.13 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.41 -6.43 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970338243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.938 kcal (2) G-P(sol) polarization free energy of solvation -37.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds