Wall clock time and date at job start Tue Mar 31 2020 05:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34827 * 125.88728 * 2 1 4 4 C 1.36481 * 107.60467 * 180.15374 * 3 2 1 5 5 C 1.48380 * 126.23289 * 179.87467 * 4 3 2 6 6 N 1.31339 * 126.50908 * 324.88940 * 5 4 3 7 7 N 1.39764 * 109.09231 * 180.29575 * 6 5 4 8 8 H 0.97005 * 125.16014 * 179.67990 * 7 6 5 9 9 C 1.34096 * 109.68379 * 359.70127 * 7 6 5 10 10 C 1.38033 * 107.87588 * 0.02562 * 9 7 6 11 11 C 1.47245 * 126.81575 * 179.97438 * 10 9 7 12 12 O 1.21619 * 120.00328 * 215.01809 * 11 10 9 13 13 N 1.34782 * 119.99773 * 35.02104 * 11 10 9 14 14 C 1.47417 * 125.64938 * 355.18326 * 13 11 10 15 15 C 1.54911 * 104.83523 * 155.90720 * 14 13 11 16 16 C 1.55159 * 101.61270 * 36.99317 * 15 14 13 17 17 H 1.08998 * 110.71975 * 82.88503 * 16 15 14 18 18 N 1.46504 * 110.71924 * 206.15556 * 16 15 14 19 19 C 1.36932 * 119.99816 * 205.00065 * 18 16 15 20 20 H 1.07993 * 120.00147 * 359.97438 * 19 18 16 21 21 C 1.38817 * 119.99835 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00081 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46982 * 90.00254 * 23 21 19 25 25 H 1.48493 * 109.47273 * 210.00257 * 23 21 19 26 26 H 1.48504 * 109.47163 * 330.00419 * 23 21 19 27 27 C 1.47019 * 125.64888 * 175.22792 * 13 11 10 28 28 C 1.40885 * 107.54076 * 359.61065 * 4 3 2 29 29 N 1.30663 * 108.09445 * 0.24005 * 28 4 3 30 30 H 1.09000 * 109.46485 * 270.25583 * 1 2 3 31 31 H 1.08996 * 109.47559 * 30.25542 * 1 2 3 32 32 H 1.09001 * 109.47175 * 150.26537 * 1 2 3 33 33 H 1.08000 * 126.19559 * 0.03254 * 3 2 1 34 34 H 1.08002 * 126.06243 * 179.97438 * 9 7 6 35 35 H 1.09004 * 110.37013 * 37.07217 * 14 13 11 36 36 H 1.09000 * 110.36921 * 274.74766 * 14 13 11 37 37 H 1.08996 * 111.00557 * 155.08104 * 15 14 13 38 38 H 1.08995 * 111.00575 * 278.90240 * 15 14 13 39 39 H 0.97006 * 119.99790 * 24.99271 * 18 16 15 40 40 H 0.96993 * 120.00213 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.88303 * 300.44332 * 27 13 11 42 42 H 1.09002 * 109.88593 * 61.45179 * 27 13 11 43 43 H 1.08000 * 125.95390 * 180.21106 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2553 1.0923 0.0000 4 6 3.5512 0.6642 -0.0035 5 6 4.7594 1.5255 -0.0074 6 7 4.8927 2.6820 -0.6155 7 7 6.1801 3.1744 -0.3844 8 1 6.5284 4.0113 -0.7296 9 6 6.8611 2.3141 0.3866 10 6 6.0298 1.2490 0.6692 11 6 6.3566 0.0666 1.4837 12 8 5.8975 -1.0204 1.1893 13 7 7.1643 0.1891 2.5557 14 6 7.8664 1.4186 2.9664 15 6 8.1167 1.2439 4.4852 16 6 8.4242 -0.2741 4.5785 17 1 9.4686 -0.4715 4.3367 18 7 8.0924 -0.7893 5.9092 19 6 8.7220 -1.9075 6.3869 20 1 9.4629 -2.4098 5.7827 21 6 8.4080 -2.3954 7.6480 22 7 7.5047 -1.7835 8.3843 23 14 9.2664 -3.9212 8.2995 24 1 10.4952 -3.5231 9.0320 25 1 8.3548 -4.6471 9.2199 26 1 9.6316 -4.8065 7.1645 27 6 7.4919 -0.8815 3.5085 28 6 3.5330 -0.7445 0.0035 29 7 2.2858 -1.1342 0.0055 30 1 -0.3632 0.0046 1.0277 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3633 -0.8924 -0.5097 33 1 1.9231 2.1200 0.0005 34 1 7.8796 2.4330 0.7255 35 1 7.2407 2.2921 2.7831 36 1 8.8131 1.5107 2.4341 37 1 8.9715 1.8364 4.8110 38 1 7.2260 1.4980 5.0597 39 1 7.4268 -0.3383 6.4518 40 1 7.2850 -2.1247 9.2653 41 1 6.5805 -1.2512 3.9785 42 1 7.9986 -1.6962 2.9910 43 1 4.3990 -1.3899 0.0061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970448489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:26 Heat of formation + Delta-G solvation = 144.762046 kcal Electronic energy + Delta-G solvation = -27565.659883 eV Core-core repulsion = 23650.117873 eV Total energy + Delta-G solvation = -3915.542010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44788 -40.77486 -39.24631 -37.07732 -34.13752 -33.62642 -32.20738 -31.71692 -30.34061 -29.59802 -29.51421 -27.38651 -26.84480 -24.41586 -23.11211 -22.60182 -21.87858 -20.95083 -20.20189 -19.66569 -19.24352 -17.84850 -17.15040 -16.85195 -16.43594 -16.01125 -15.55533 -15.07434 -14.84860 -14.52141 -14.45681 -14.37336 -13.69411 -13.43353 -13.29245 -13.13158 -12.99608 -12.82905 -12.62918 -12.41443 -12.31215 -11.87210 -11.54914 -11.15022 -11.06362 -10.81355 -10.78943 -10.75452 -10.30669 -10.12112 -10.04710 -9.76792 -9.61662 -9.41180 -8.98212 -8.90123 -8.33093 -8.12481 -7.06549 -5.81701 -3.12366 1.44872 1.55645 2.17593 2.37630 2.58730 3.04059 3.27233 3.42866 3.48641 3.50236 3.54787 4.24207 4.50668 4.54188 4.56821 4.72397 4.92668 4.94615 4.99865 5.06326 5.18413 5.25940 5.32997 5.39187 5.47426 5.51620 5.60635 5.74748 5.77382 5.93983 5.96830 6.11565 6.26762 6.34125 6.40042 6.56585 6.70032 6.82918 6.85463 6.91567 6.95491 7.40014 7.67258 7.70950 7.90218 8.35669 8.55840 9.47716 10.01420 10.35869 11.40376 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.002944 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.449563 B = 9507.256647 C =10943.406371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.089 3.911 4 C -0.182 4.182 5 C 0.216 3.784 6 N -0.298 5.298 7 N -0.469 5.469 8 H 0.441 0.559 9 C 0.100 3.900 10 C -0.269 4.269 11 C 0.605 3.395 12 O -0.541 6.541 13 N -0.608 5.608 14 C 0.099 3.901 15 C -0.142 4.142 16 C 0.172 3.828 17 H 0.068 0.932 18 N -0.712 5.712 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.085 3.915 28 C 0.100 3.900 29 N -0.304 5.304 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.187 0.813 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 14.148 -19.038 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.061 4.061 4 C -0.196 4.196 5 C 0.047 3.953 6 N -0.119 5.119 7 N -0.174 5.174 8 H 0.285 0.715 9 C -0.050 4.050 10 C -0.285 4.285 11 C 0.395 3.605 12 O -0.420 6.420 13 N -0.341 5.341 14 C -0.025 4.025 15 C -0.181 4.181 16 C 0.060 3.940 17 H 0.086 0.914 18 N -0.352 5.352 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.041 4.041 28 C -0.088 4.088 29 N -0.124 5.124 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.194 0.806 34 H 0.204 0.796 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.284 13.239 -19.885 25.285 hybrid contribution 1.392 0.076 1.007 1.719 sum -6.892 13.315 -18.879 24.108 Atomic orbital electron populations 1.21859 0.74124 1.04424 1.03513 1.48459 1.06818 1.03990 1.56604 1.22485 0.90414 0.93393 0.99786 1.17687 0.89165 0.92443 1.20281 1.20806 0.91578 0.90669 0.92231 1.77281 0.97236 1.13016 1.24398 1.45837 1.10039 1.20203 1.41365 0.71457 1.23103 0.98520 0.89760 0.93588 1.21266 0.95737 0.99446 1.12037 1.16763 0.77786 0.87014 0.78984 1.90584 1.53377 1.27805 1.70196 1.48360 1.46382 1.13170 1.26228 1.22412 0.95958 0.87845 0.96271 1.23095 1.02515 0.98857 0.93649 1.21217 0.96234 0.90194 0.86368 0.91413 1.42375 1.48242 1.31967 1.12619 1.19266 1.16986 1.02826 0.98782 0.90896 1.24773 0.99243 0.99425 0.97128 1.69659 1.34925 1.41639 1.11543 0.86174 0.78588 0.82683 0.78647 1.21658 1.21727 1.20578 1.23228 1.01000 0.89728 0.90113 1.24859 0.95386 0.93979 0.94596 1.77409 1.01815 1.07457 1.25671 0.90634 0.89561 0.89151 0.80591 0.79589 0.91113 0.91655 0.90125 0.90571 0.77883 0.93370 0.91004 0.92225 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.46 59.85 0.69 1.40 16 2 N -0.38 -4.59 4.00 -67.89 -0.27 -4.86 16 3 C 0.09 1.05 11.45 -16.87 -0.19 0.86 16 4 C -0.18 -2.63 6.00 -105.35 -0.63 -3.26 16 5 C 0.22 3.01 7.27 -80.55 -0.59 2.43 16 6 N -0.30 -3.60 12.65 34.58 0.44 -3.16 16 7 N -0.47 -3.96 7.20 30.82 0.22 -3.74 16 8 H 0.44 1.95 8.96 -182.85 -1.64 0.31 16 9 C 0.10 0.92 10.08 -16.64 -0.17 0.75 16 10 C -0.27 -3.64 5.83 -102.96 -0.60 -4.24 16 11 C 0.61 9.98 7.71 -12.60 -0.10 9.88 16 12 O -0.54 -10.49 13.50 5.26 0.07 -10.42 16 13 N -0.61 -9.48 3.33 -171.83 -0.57 -10.05 16 14 C 0.10 1.16 5.39 -2.53 -0.01 1.14 16 15 C -0.14 -2.03 6.71 -24.58 -0.16 -2.20 16 16 C 0.17 3.19 3.61 -66.07 -0.24 2.96 16 17 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 18 N -0.71 -17.14 5.15 -51.63 -0.27 -17.40 16 19 C -0.25 -6.67 9.96 -15.06 -0.15 -6.82 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.08 1.58 6.63 -3.04 -0.02 1.56 16 28 C 0.10 1.60 10.76 -17.05 -0.18 1.42 16 29 N -0.30 -4.75 12.54 30.81 0.39 -4.37 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.19 1.05 6.57 -52.49 -0.34 0.70 16 35 H 0.07 0.70 6.61 -51.93 -0.34 0.36 16 36 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 39 H 0.39 9.95 7.76 -40.82 -0.32 9.63 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.21 3.60 5.46 -52.49 -0.29 3.31 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -36.24 362.79 -7.95 -44.19 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.67 Total: 8.65 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.46 Total: 5.51 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: 0.66 Total: -70.50 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.24 -7.95 -44.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970448489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.951 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds