Wall clock time and date at job start Tue Mar 31 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35680 * 120.48924 * 2 1 4 4 C 1.40167 * 119.27651 * 180.02562 * 3 2 1 5 5 N 1.31261 * 120.35424 * 359.94282 * 4 3 2 6 6 C 1.33983 * 120.88151 * 0.02562 * 5 4 3 7 7 N 1.32508 * 132.34699 * 180.29423 * 6 5 4 8 8 C 1.33465 * 109.75540 * 180.11036 * 7 6 5 9 9 C 1.48127 * 125.32258 * 179.88339 * 8 7 6 10 10 O 1.21524 * 119.99997 * 179.68999 * 9 8 7 11 11 N 1.34780 * 119.99897 * 359.69551 * 9 8 7 12 12 C 1.46496 * 119.99734 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47552 * 324.99740 * 12 11 9 14 14 C 1.53008 * 109.47421 * 84.99427 * 12 11 9 15 15 C 1.52998 * 109.46930 * 204.99506 * 12 11 9 16 16 C 1.53504 * 114.20785 * 179.97438 * 15 12 11 17 17 N 1.47069 * 87.98363 * 220.34571 * 16 15 12 18 18 C 1.36941 * 136.05552 * 207.07801 * 17 16 15 19 19 H 1.08000 * 119.99396 * 7.56018 * 18 17 16 20 20 C 1.38806 * 119.99993 * 187.55101 * 18 17 16 21 21 N 1.31621 * 119.99759 * 174.37714 * 20 18 17 22 22 Si 1.86799 * 119.99972 * 354.38427 * 20 18 17 23 23 H 1.48501 * 109.46963 * 174.94900 * 22 20 18 24 24 H 1.48498 * 109.47184 * 294.94894 * 22 20 18 25 25 H 1.48507 * 109.47082 * 54.95224 * 22 20 18 26 26 C 1.47064 * 87.88742 * 27.34488 * 17 16 15 27 27 N 1.31983 * 109.35323 * 359.61559 * 8 7 6 28 28 N 1.36167 * 120.48373 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47264 * 270.04231 * 1 2 3 30 30 H 1.09003 * 109.46776 * 30.04189 * 1 2 3 31 31 H 1.09006 * 109.47184 * 150.03796 * 1 2 3 32 32 H 1.08001 * 120.35894 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.82269 * 179.97438 * 4 3 2 34 34 H 0.96996 * 120.00127 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.47419 * 179.97438 * 14 12 11 36 36 H 1.08994 * 109.46942 * 300.00242 * 14 12 11 37 37 H 1.09004 * 109.46240 * 60.00200 * 14 12 11 38 38 H 1.09002 * 113.41395 * 313.19707 * 15 12 11 39 39 H 1.08997 * 113.46758 * 105.56146 * 16 15 12 40 40 H 1.09000 * 113.51898 * 335.13170 * 16 15 12 41 41 H 0.96993 * 120.00423 * 354.88754 * 21 20 18 42 42 H 1.08993 * 113.47012 * 87.43421 * 26 17 16 43 43 H 1.09000 * 113.46758 * 217.87997 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1692 0.0000 4 6 3.5968 1.1395 -0.0005 5 7 4.2360 -0.0069 0.0001 6 6 3.5665 -1.1675 0.0007 7 7 3.9688 -2.4300 0.0065 8 6 2.9090 -3.2413 0.0019 9 6 2.9636 -4.7215 0.0035 10 8 1.9342 -5.3675 0.0046 11 7 4.1548 -5.3520 0.0039 12 6 4.2087 -6.8160 0.0049 13 1 3.3809 -7.2096 0.5947 14 6 4.1016 -7.3314 -1.4318 15 6 5.5340 -7.2770 0.6147 16 6 5.7048 -8.8015 0.6699 17 7 6.3053 -8.6339 2.0019 18 6 7.2054 -9.3217 2.7714 19 1 7.7391 -10.1635 2.3555 20 6 7.4319 -8.9368 4.0856 21 7 8.2120 -9.6623 4.8586 22 14 6.6295 -7.3894 4.7572 23 1 6.9281 -7.2661 6.2066 24 1 7.1626 -6.2038 4.0393 25 1 5.1597 -7.4682 4.5595 26 6 5.5087 -7.4062 2.1467 27 7 1.8048 -2.5183 0.0015 28 7 2.1978 -1.1734 0.0005 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5133 32 1 1.6693 2.1124 -0.0004 33 1 4.1536 2.0649 -0.0010 34 1 4.9764 -4.8364 0.0027 35 1 4.1421 -8.4206 -1.4310 36 1 3.1574 -7.0028 -1.8661 37 1 4.9294 -6.9377 -2.0215 38 1 6.4000 -6.7439 0.2223 39 1 6.4010 -9.1876 -0.0747 40 1 4.7600 -9.3449 0.6850 41 1 8.5689 -10.5039 4.5345 42 1 4.5117 -7.5808 2.5510 43 1 6.0378 -6.6034 2.6602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970839792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:00 Heat of formation + Delta-G solvation = 169.240693 kcal Electronic energy + Delta-G solvation = -27374.617997 eV Core-core repulsion = 23460.137460 eV Total energy + Delta-G solvation = -3914.480537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.39540 -40.20948 -39.20926 -38.37932 -35.78779 -35.14331 -32.63641 -32.23294 -31.41755 -30.68204 -29.11758 -27.73156 -26.08625 -25.16875 -24.68927 -23.71134 -22.46155 -21.09273 -20.53000 -19.55736 -19.00638 -18.48390 -17.45003 -17.36715 -17.24388 -16.27612 -16.15604 -15.28781 -15.15234 -14.75050 -14.60432 -14.17273 -13.96462 -13.85256 -13.74051 -13.25716 -13.14728 -13.11579 -13.06875 -12.94858 -12.32096 -12.00779 -11.88668 -11.80271 -11.51772 -10.92666 -10.76085 -10.64445 -10.56517 -10.45013 -10.31821 -10.23668 -10.13287 -9.28913 -9.26394 -9.09844 -8.95840 -8.86192 -7.12571 -6.25618 -3.19577 -0.19096 0.11993 1.21966 1.43785 2.53923 2.72071 2.87270 3.15729 3.46573 3.49016 3.49693 3.66465 3.69077 4.06923 4.25123 4.50852 4.63726 4.63842 4.66903 4.72135 4.73247 4.91037 5.09247 5.11539 5.33409 5.44143 5.49270 5.51036 5.53454 5.58510 5.68647 5.77905 5.86488 6.01066 6.13260 6.26437 6.30193 6.31805 6.41088 6.51219 6.86932 6.94425 7.15397 7.17845 7.48352 7.97390 8.27282 9.01375 9.53829 10.40442 11.24394 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.002772 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.639168 B =10096.808586 C =11024.160989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 C -0.228 4.228 4 C 0.213 3.787 5 N -0.453 5.453 6 C 0.446 3.554 7 N -0.498 5.498 8 C 0.244 3.756 9 C 0.610 3.390 10 O -0.508 6.508 11 N -0.691 5.691 12 C 0.152 3.848 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.140 4.140 16 C 0.136 3.864 17 N -0.629 5.629 18 C -0.302 4.302 19 H 0.083 0.917 20 C -0.025 4.025 21 N -0.935 5.935 22 Si 1.068 2.932 23 H -0.295 1.295 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.101 3.899 27 N -0.268 5.268 28 N -0.328 5.328 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.046 0.954 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.789 26.573 -14.576 34.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 C -0.253 4.253 4 C 0.027 3.973 5 N -0.168 5.168 6 C 0.086 3.914 7 N -0.232 5.232 8 C -0.040 4.040 9 C 0.389 3.611 10 O -0.380 6.380 11 N -0.342 5.342 12 C 0.048 3.952 13 H 0.113 0.887 14 C -0.218 4.218 15 C -0.160 4.160 16 C 0.009 3.991 17 N -0.357 5.357 18 C -0.429 4.429 19 H 0.101 0.899 20 C -0.223 4.223 21 N -0.577 5.577 22 Si 0.901 3.099 23 H -0.223 1.223 24 H -0.220 1.220 25 H -0.214 1.214 26 C -0.024 4.024 27 N -0.102 5.102 28 N -0.109 5.109 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.194 0.806 33 H 0.211 0.789 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.831 25.987 -13.067 33.117 hybrid contribution -0.315 -0.312 -1.283 1.357 sum -16.147 25.675 -14.350 33.554 Atomic orbital electron populations 1.21110 0.86099 1.05752 1.05214 1.20977 0.96858 0.81845 0.91633 1.21859 0.95769 0.97947 1.09691 1.23668 0.91769 0.95823 0.86068 1.68101 1.36126 0.94997 1.17536 1.22730 0.78310 0.93676 0.96691 1.70860 1.28179 0.96404 1.27719 1.24301 0.85896 0.96921 0.96877 1.16308 0.84891 0.81791 0.78096 1.90853 1.33511 1.64699 1.48955 1.45902 1.07732 1.08293 1.72314 1.21202 0.99450 0.77145 0.97440 0.88703 1.22141 1.01979 1.02000 0.95667 1.23597 0.95662 0.99178 0.97594 1.22252 0.96256 0.91521 0.89102 1.45959 1.46537 1.26135 1.17046 1.20151 1.15931 1.13021 0.93759 0.89904 1.25701 0.99998 1.05001 0.91646 1.70914 1.35167 1.14393 1.37229 0.83742 0.75694 0.75219 0.75261 1.22254 1.22000 1.21421 1.22855 0.95588 0.90771 0.93203 1.78887 1.19335 0.82913 1.29061 1.49056 1.09216 1.06359 1.46319 0.88305 0.88217 0.88968 0.80648 0.78928 0.75026 0.90818 0.92399 0.92219 0.88026 0.93377 0.94213 0.92960 0.93673 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.13 36.01 0.36 -0.08 16 2 C 0.20 1.34 6.86 -81.58 -0.56 0.78 16 3 C -0.23 -0.73 9.72 -39.77 -0.39 -1.11 16 4 C 0.21 1.00 11.27 -17.07 -0.19 0.80 16 5 N -0.45 -4.66 10.48 -13.79 -0.14 -4.81 16 6 C 0.45 5.82 8.99 -323.03 -2.90 2.91 16 7 N -0.50 -7.48 10.89 -12.23 -0.13 -7.61 16 8 C 0.24 3.74 7.92 -156.79 -1.24 2.50 16 9 C 0.61 9.68 7.81 -12.20 -0.10 9.58 16 10 O -0.51 -9.22 16.73 5.34 0.09 -9.13 16 11 N -0.69 -9.93 5.07 -54.66 -0.28 -10.21 16 12 C 0.15 2.23 2.47 -67.93 -0.17 2.07 16 13 H 0.09 1.53 7.32 -51.93 -0.38 1.15 16 14 C -0.16 -2.00 9.29 37.16 0.35 -1.65 16 15 C -0.14 -2.39 3.67 -89.96 -0.33 -2.72 16 16 C 0.14 2.64 7.33 -8.50 -0.06 2.58 16 17 N -0.63 -15.81 3.69 -184.57 -0.68 -16.49 16 18 C -0.30 -8.93 11.08 -15.06 -0.17 -9.10 16 19 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 20 C -0.02 -0.76 5.50 -17.43 -0.10 -0.86 16 21 N -0.93 -30.21 13.70 55.49 0.76 -29.45 16 22 Si 1.07 27.92 25.16 -169.99 -4.28 23.64 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 24 H -0.29 -7.23 6.51 56.52 0.37 -6.86 16 25 H -0.29 -7.11 6.21 56.52 0.35 -6.76 16 26 C 0.10 2.20 5.27 -8.36 -0.04 2.16 16 27 N -0.27 -3.89 12.67 32.02 0.41 -3.48 16 28 N -0.33 -3.78 3.91 -10.07 -0.04 -3.81 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.03 8.09 -51.93 -0.42 -0.39 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.18 -0.23 8.06 -52.49 -0.42 -0.65 16 33 H 0.19 0.01 8.06 -52.49 -0.42 -0.41 16 34 H 0.41 5.51 8.27 -40.82 -0.34 5.17 16 35 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 42 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 43 H 0.05 1.19 4.73 -51.93 -0.25 0.95 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -39.57 362.63 -9.99 -49.55 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.62 Total: -1.52 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -5.54 Total: 7.86 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -0.11 Total: -75.87 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 27.92 SS G_CDS: -4.28 Total: 23.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.57 -9.99 -49.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970839792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.795 kcal (2) G-P(sol) polarization free energy of solvation -39.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds