Wall clock time and date at job start Tue Mar 31 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36936 * 120.00233 * 2 1 4 4 H 1.07997 * 120.00682 * 159.17863 * 3 2 1 5 5 C 1.38811 * 119.99728 * 338.89664 * 3 2 1 6 6 N 1.31629 * 119.99954 * 345.78877 * 5 3 2 7 7 Si 1.86797 * 120.00141 * 165.78760 * 5 3 2 8 8 H 1.48500 * 109.47516 * 94.97548 * 7 5 3 9 9 H 1.48505 * 109.47175 * 214.97645 * 7 5 3 10 10 H 1.48504 * 109.47248 * 334.97558 * 7 5 3 11 11 C 1.46501 * 120.00218 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64166 * 181.68512 * 11 2 1 13 13 C 1.55155 * 110.72083 * 305.02426 * 11 2 1 14 14 C 1.54919 * 101.58083 * 153.86241 * 13 11 2 15 15 N 1.47422 * 104.83034 * 322.98893 * 14 13 11 16 16 C 1.34776 * 125.64628 * 204.09002 * 15 14 13 17 17 O 1.21564 * 120.00371 * 183.94479 * 16 15 14 18 18 C 1.47727 * 119.99906 * 3.95199 * 16 15 14 19 19 C 1.40112 * 120.35006 * 153.02282 * 18 16 15 20 20 N 1.31262 * 121.14717 * 180.02562 * 19 18 16 21 21 C 1.32714 * 121.80123 * 359.97438 * 20 19 18 22 22 C 1.40785 * 120.68051 * 359.97438 * 21 20 19 23 23 C 1.39438 * 120.34829 * 332.73983 * 18 16 15 24 24 N 1.35337 * 107.75558 * 180.02562 * 22 21 20 25 25 N 1.28667 * 109.99772 * 0.02562 * 24 22 21 26 26 N 1.37119 * 133.40690 * 180.02562 * 21 20 19 27 27 C 1.46500 * 126.58846 * 359.97438 * 26 21 20 28 28 C 1.47017 * 108.70641 * 24.13226 * 15 14 13 29 29 H 1.08997 * 109.47783 * 84.01110 * 1 2 3 30 30 H 1.09007 * 109.47253 * 204.01408 * 1 2 3 31 31 H 1.09003 * 109.47389 * 324.00707 * 1 2 3 32 32 H 0.96998 * 120.00050 * 179.97438 * 6 5 3 33 33 H 1.09000 * 111.00471 * 271.93472 * 13 11 2 34 34 H 1.09002 * 111.00481 * 35.78848 * 13 11 2 35 35 H 1.09000 * 110.36285 * 204.14849 * 14 13 11 36 36 H 1.08997 * 110.36192 * 81.82923 * 14 13 11 37 37 H 1.07994 * 119.42763 * 359.97193 * 19 18 16 38 38 H 1.07998 * 120.94872 * 0.02562 * 23 18 16 39 39 H 1.09000 * 109.47273 * 90.00643 * 27 26 21 40 40 H 1.08998 * 109.47517 * 210.00157 * 27 26 21 41 41 H 1.09000 * 109.47640 * 330.00977 * 27 26 21 42 42 H 1.08999 * 109.88442 * 239.52305 * 28 15 14 43 43 H 1.09000 * 110.01532 * 118.42487 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1767 1.2165 0.3324 5 6 1.5254 2.3477 -0.4328 6 7 0.3918 2.2771 -1.0981 7 14 2.2941 4.0113 -0.0713 8 1 3.1141 4.4407 -1.2325 9 1 1.2219 5.0093 0.1736 10 1 3.1573 3.9067 1.1326 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0916 0.0305 13 6 1.7507 -2.1600 1.1894 14 6 2.0638 -3.5781 0.6497 15 7 1.7323 -3.5173 -0.7855 16 6 1.4056 -4.5698 -1.5613 17 8 1.2201 -4.4126 -2.7524 18 6 1.2727 -5.9145 -0.9643 19 6 0.4315 -6.8695 -1.5506 20 7 0.3013 -8.0687 -1.0330 21 6 0.9559 -8.4324 0.0627 22 6 1.8223 -7.5336 0.7136 23 6 1.9875 -6.2487 0.1853 24 7 2.3453 -8.1692 1.7878 25 7 1.8842 -9.3684 1.8572 26 7 1.0001 -9.5924 0.7925 27 6 0.2651 -10.8284 0.5131 28 6 1.8182 -2.1188 -1.2305 29 1 -0.3634 0.1072 -1.0220 30 1 -0.3634 -0.9388 0.4182 31 1 -0.3634 0.8315 0.6039 32 1 -0.0446 3.0889 -1.4002 33 1 2.3373 -1.9435 2.0821 34 1 0.6850 -2.0434 1.3862 35 1 1.4431 -4.3204 1.1514 36 1 3.1199 -3.8109 0.7857 37 1 -0.1199 -6.6141 -2.4433 38 1 2.6465 -5.5347 0.6568 39 1 0.8641 -11.4690 -0.1341 40 1 0.0593 -11.3482 1.4488 41 1 -0.6750 -10.5879 0.0166 42 1 0.8540 -1.7944 -1.6220 43 1 2.5834 -2.0185 -2.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971955151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:53 Heat of formation + Delta-G solvation = 145.334971 kcal Electronic energy + Delta-G solvation = -27756.972811 eV Core-core repulsion = 23841.455645 eV Total energy + Delta-G solvation = -3915.517167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69173 -40.30066 -38.63463 -37.40031 -35.35373 -34.90186 -32.86290 -31.54147 -30.97741 -29.84334 -28.26570 -27.87201 -26.10077 -25.46838 -24.68452 -23.14318 -22.61375 -21.74620 -20.18439 -19.29526 -18.81980 -17.68657 -17.13404 -17.03275 -16.81497 -16.24399 -15.99649 -15.35065 -14.93295 -14.41279 -14.24126 -13.99951 -13.65134 -13.53715 -13.43945 -13.28899 -13.26703 -12.83787 -12.67856 -12.56408 -12.23684 -12.07485 -11.93805 -11.57323 -11.29144 -10.97525 -10.82519 -10.62719 -10.50920 -10.34570 -10.31881 -9.92883 -9.87859 -9.73614 -9.59982 -9.24179 -8.61858 -8.46434 -6.88830 -5.80030 -3.26517 -0.15015 0.35739 1.40062 1.72296 2.61962 2.92687 3.30115 3.34632 3.41603 3.43044 3.44903 3.72390 3.86711 4.21843 4.30437 4.41994 4.46226 4.64077 4.79017 4.88614 4.93929 5.04556 5.14834 5.22559 5.28967 5.36817 5.43864 5.50503 5.66685 5.73854 5.81727 5.90188 6.01968 6.25917 6.26837 6.39868 6.57218 6.75400 6.79095 7.13746 7.29846 7.43937 7.59742 7.66860 7.74588 8.14092 8.29709 9.13918 9.76608 10.24154 11.24178 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.002455 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.551880 B =11402.034330 C =11903.973228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.072 0.928 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.154 4.154 14 C 0.088 3.912 15 N -0.602 5.602 16 C 0.577 3.423 17 O -0.533 6.533 18 C -0.192 4.192 19 C 0.234 3.766 20 N -0.489 5.489 21 C 0.285 3.715 22 C -0.074 4.074 23 C 0.040 3.960 24 N -0.197 5.197 25 N 0.008 4.992 26 N -0.387 5.387 27 C 0.102 3.898 28 C 0.086 3.914 29 H 0.033 0.967 30 H 0.003 0.997 31 H 0.043 0.957 32 H 0.254 0.746 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.188 0.812 38 H 0.169 0.831 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -23.136 4.244 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.194 4.194 14 C -0.036 4.036 15 N -0.335 5.335 16 C 0.364 3.636 17 O -0.411 6.411 18 C -0.201 4.201 19 C 0.060 3.940 20 N -0.203 5.203 21 C 0.041 3.959 22 C -0.200 4.200 23 C 0.010 3.990 24 N -0.077 5.077 25 N 0.027 4.973 26 N -0.183 5.183 27 C -0.039 4.039 28 C -0.038 4.038 29 H 0.052 0.948 30 H 0.021 0.979 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.205 0.795 38 H 0.186 0.814 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.130 -24.308 4.421 24.707 hybrid contribution 0.293 1.631 -0.369 1.698 sum 0.163 -22.676 4.052 23.036 Atomic orbital electron populations 1.20828 0.82336 0.95551 0.99843 1.43948 1.01951 0.99880 1.84736 1.19226 0.97452 0.84800 1.37644 0.91045 1.25028 0.97785 0.98603 0.98074 1.70089 1.18707 1.27127 1.38829 0.86220 0.78243 0.83843 0.78081 1.21437 1.21576 1.20408 1.21372 0.96559 0.85937 0.89937 0.90113 1.23398 1.03103 0.92676 1.00206 1.22756 0.99832 0.99868 0.81095 1.48459 1.66404 1.08105 1.10494 1.17365 0.77970 0.82529 0.85769 1.90823 1.51327 1.84703 1.14199 1.20855 1.03567 0.97418 0.98277 1.23069 0.90562 0.84437 0.95909 1.66769 1.24413 1.19483 1.09638 1.19605 0.95440 0.87964 0.92843 1.20361 1.04106 0.97602 0.97890 1.21759 0.93931 0.92422 0.90894 1.74872 1.17629 0.99897 1.15309 1.81752 1.01607 1.10245 1.03675 1.49973 1.36600 1.11043 1.20696 1.22085 0.96320 0.81835 1.03689 1.23044 1.02820 0.77830 1.00075 0.94833 0.97894 0.93794 0.93597 0.90056 0.90211 0.90790 0.90790 0.79533 0.81397 0.89773 0.88339 0.88330 0.90515 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 7.71 59.84 0.46 4.15 16 2 N -0.59 -13.60 2.93 -171.39 -0.50 -14.10 16 3 C -0.26 -6.79 9.63 -15.06 -0.15 -6.93 16 4 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 5 C 0.00 0.11 5.09 -17.43 -0.09 0.02 16 6 N -0.90 -25.52 10.66 55.49 0.59 -24.93 16 7 Si 0.91 21.13 29.58 -169.99 -5.03 16.10 16 8 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 C 0.17 3.16 3.44 -66.09 -0.23 2.93 16 12 H 0.08 1.45 7.92 -51.93 -0.41 1.04 16 13 C -0.15 -2.21 6.59 -24.58 -0.16 -2.38 16 14 C 0.09 1.03 5.03 -2.53 -0.01 1.02 16 15 N -0.60 -8.89 3.33 -171.67 -0.57 -9.46 16 16 C 0.58 8.58 7.65 -12.38 -0.09 8.49 16 17 O -0.53 -9.68 16.99 5.31 0.09 -9.59 16 18 C -0.19 -2.29 5.71 -104.87 -0.60 -2.88 16 19 C 0.23 2.57 10.74 -17.09 -0.18 2.38 16 20 N -0.49 -5.50 10.37 -12.03 -0.12 -5.63 16 21 C 0.28 3.29 8.05 -155.93 -1.26 2.04 16 22 C -0.07 -0.88 7.27 -84.74 -0.62 -1.50 16 23 C 0.04 0.44 8.09 -38.51 -0.31 0.13 16 24 N -0.20 -2.45 12.40 32.17 0.40 -2.05 16 25 N 0.01 0.10 13.71 60.35 0.83 0.92 16 26 N -0.39 -3.85 4.10 -67.18 -0.28 -4.12 16 27 C 0.10 0.52 11.54 59.85 0.69 1.21 16 28 C 0.09 1.55 6.51 -3.06 -0.02 1.53 16 29 H 0.03 0.86 7.28 -51.93 -0.38 0.49 16 30 H 0.00 0.05 6.14 -51.92 -0.32 -0.27 16 31 H 0.04 1.11 7.30 -51.93 -0.38 0.73 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.24 6.15 -51.93 -0.32 0.92 16 35 H 0.07 0.76 6.14 -51.93 -0.32 0.44 16 36 H 0.07 0.71 7.32 -51.93 -0.38 0.33 16 37 H 0.19 1.76 7.87 -52.49 -0.41 1.34 16 38 H 0.17 1.55 4.65 -52.49 -0.24 1.30 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.59 7.08 -51.93 -0.37 1.22 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -32.23 353.12 -7.03 -39.26 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.19 Total: -1.92 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -2.56 Total: 10.20 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.34 Total: -59.37 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.23 -7.03 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971955151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.593 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds