Wall clock time and date at job start Tue Mar 31 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32445 * 125.18776 * 2 1 4 4 C 1.32871 * 109.80950 * 180.02562 * 3 2 1 5 5 N 1.33743 * 132.43685 * 180.02562 * 4 3 2 6 6 C 1.31203 * 121.19407 * 179.97438 * 5 4 3 7 7 C 1.40094 * 120.45500 * 359.72114 * 6 5 4 8 8 C 1.36999 * 119.05227 * 0.54612 * 7 6 5 9 9 C 1.47715 * 120.63738 * 179.73513 * 8 7 6 10 10 O 1.21559 * 120.00176 * 171.53895 * 9 8 7 11 11 N 1.34778 * 120.00052 * 351.53419 * 9 8 7 12 12 C 1.47493 * 125.58855 * 5.43183 * 11 9 8 13 13 C 1.54326 * 107.03457 * 181.08216 * 12 11 9 14 14 C 1.55162 * 103.09960 * 22.24019 * 13 12 11 15 15 H 1.08997 * 111.00591 * 82.52475 * 14 13 12 16 16 N 1.46498 * 111.00420 * 206.33566 * 14 13 12 17 17 C 1.46500 * 119.99975 * 59.99848 * 16 14 13 18 18 C 1.36945 * 119.99961 * 239.99967 * 16 14 13 19 19 H 1.07998 * 119.99887 * 324.72245 * 18 16 14 20 20 C 1.38815 * 119.99689 * 144.72074 * 18 16 14 21 21 N 1.31621 * 119.99283 * 155.43516 * 20 18 16 22 22 Si 1.86795 * 120.00391 * 335.43322 * 20 18 16 23 23 H 1.48505 * 109.47212 * 94.83935 * 22 20 18 24 24 H 1.48503 * 109.47236 * 214.84371 * 22 20 18 25 25 H 1.48501 * 109.47114 * 334.84238 * 22 20 18 26 26 C 1.47425 * 125.65393 * 185.49486 * 11 9 8 27 27 N 1.36676 * 107.18561 * 359.97438 * 4 3 2 28 28 N 1.31361 * 125.18306 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46941 * 89.97479 * 1 2 3 30 30 H 1.09003 * 109.47036 * 209.97891 * 1 2 3 31 31 H 1.08999 * 109.47058 * 329.97472 * 1 2 3 32 32 H 1.08006 * 119.77213 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.47584 * 180.30662 * 7 6 5 34 34 H 1.08999 * 110.03648 * 61.72429 * 12 11 9 35 35 H 1.09000 * 109.96145 * 300.40481 * 12 11 9 36 36 H 1.08998 * 110.72225 * 263.79205 * 13 12 11 37 37 H 1.08995 * 110.71925 * 140.68685 * 13 12 11 38 38 H 1.08992 * 109.46930 * 95.33319 * 17 16 14 39 39 H 1.09011 * 109.46905 * 215.32790 * 17 16 14 40 40 H 1.08998 * 109.47199 * 335.32744 * 17 16 14 41 41 H 0.97002 * 119.99165 * 179.97438 * 21 20 18 42 42 H 1.09004 * 110.35754 * 36.99909 * 26 11 9 43 43 H 1.08994 * 110.36910 * 274.67915 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0824 0.0000 4 6 3.5514 0.7301 -0.0006 5 7 4.6833 1.4425 -0.0003 6 6 5.8562 0.8545 -0.0005 7 6 5.9499 -0.5432 0.0049 8 6 4.7995 -1.2871 -0.0010 9 6 4.8575 -2.7632 -0.0014 10 8 3.8402 -3.4115 0.1483 11 7 6.0384 -3.3911 -0.1679 12 6 7.3565 -2.7339 -0.2462 13 6 8.4038 -3.8460 -0.4659 14 6 7.5650 -5.0056 -1.0653 15 1 7.4231 -4.8714 -2.1376 16 7 8.1821 -6.3029 -0.7785 17 6 8.3858 -6.7264 0.6091 18 6 8.5686 -7.1197 -1.8075 19 1 7.9862 -7.1559 -2.7162 20 6 9.7091 -7.9012 -1.6824 21 7 9.8350 -9.0004 -2.3953 22 14 11.0650 -7.3927 -0.5025 23 1 10.8746 -8.0840 0.7980 24 1 12.3840 -7.7666 -1.0734 25 1 11.0145 -5.9233 -0.2939 26 6 6.2258 -4.8472 -0.3029 27 7 3.5945 -0.6360 -0.0003 28 7 2.2639 -1.0736 -0.0005 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 6.7558 1.4524 0.0001 33 1 6.9152 -1.0275 0.0097 34 1 7.5663 -2.2057 0.6838 35 1 7.3753 -2.0364 -1.0836 36 1 8.8534 -4.1448 0.4810 37 1 9.1700 -3.5206 -1.1695 38 1 7.5511 -7.3523 0.9241 39 1 9.3137 -7.2937 0.6833 40 1 8.4445 -5.8482 1.2521 41 1 10.6321 -9.5462 -2.3082 42 1 5.4084 -5.2831 -0.8773 43 1 6.2912 -5.3140 0.6798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972719566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:58 Heat of formation + Delta-G solvation = 174.969741 kcal Electronic energy + Delta-G solvation = -28075.669249 eV Core-core repulsion = 24161.437142 eV Total energy + Delta-G solvation = -3914.232106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.24992 -40.56052 -38.96496 -37.90910 -35.37960 -34.80542 -32.87295 -31.97686 -31.17181 -30.51447 -29.29851 -28.52510 -26.49676 -25.97353 -24.52832 -23.59191 -22.73297 -21.73408 -20.00043 -19.71097 -18.86364 -18.39050 -17.38346 -17.16968 -17.05222 -16.36100 -16.09482 -15.53006 -15.21768 -14.52123 -14.11110 -14.04642 -13.95081 -13.80988 -13.59868 -13.23033 -13.03659 -12.90048 -12.82326 -12.70129 -12.68145 -12.41579 -12.11504 -11.95636 -11.55597 -11.19671 -11.04903 -10.80858 -10.67390 -10.41679 -10.37612 -10.12274 -10.03588 -9.88771 -9.70933 -9.18214 -8.89135 -8.63575 -7.09489 -6.15695 -3.56920 -0.36774 0.32394 1.37276 2.00554 2.44315 2.61165 2.88461 3.07973 3.19249 3.34217 3.37867 3.59754 3.65655 4.16909 4.26210 4.36906 4.42696 4.57870 4.66977 4.77505 4.90783 4.95141 5.15835 5.18764 5.22165 5.25662 5.37317 5.42577 5.46911 5.60861 5.72731 5.84362 5.88953 5.92152 5.99601 6.05450 6.10279 6.24361 6.42629 6.53483 6.60727 6.97974 7.13261 7.59934 7.71411 7.84272 8.19290 8.76927 9.52291 9.88163 10.99302 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026425 B = 0.002734 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.330982 B =10237.174173 C =10946.383223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.259 3.741 3 N -0.518 5.518 4 C 0.436 3.564 5 N -0.443 5.443 6 C 0.206 3.794 7 C -0.223 4.223 8 C 0.170 3.830 9 C 0.561 3.439 10 O -0.491 6.491 11 N -0.597 5.597 12 C 0.080 3.920 13 C -0.159 4.159 14 C 0.173 3.827 15 H 0.091 0.909 16 N -0.593 5.593 17 C 0.106 3.894 18 C -0.279 4.279 19 H 0.082 0.918 20 C 0.038 3.962 21 N -0.892 5.892 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.302 1.302 25 H -0.269 1.269 26 C 0.091 3.909 27 N -0.302 5.302 28 N -0.294 5.294 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.199 0.801 33 H 0.207 0.793 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.023 0.977 39 H 0.043 0.957 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.082 0.918 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 19.680 6.106 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.022 4.022 3 N -0.251 5.251 4 C 0.075 3.925 5 N -0.157 5.157 6 C 0.019 3.981 7 C -0.248 4.248 8 C 0.048 3.952 9 C 0.345 3.655 10 O -0.363 6.363 11 N -0.332 5.332 12 C -0.042 4.042 13 C -0.199 4.199 14 C 0.063 3.937 15 H 0.109 0.891 16 N -0.315 5.315 17 C -0.038 4.038 18 C -0.407 4.407 19 H 0.100 0.900 20 C -0.163 4.163 21 N -0.532 5.532 22 Si 0.714 3.286 23 H -0.214 1.214 24 H -0.230 1.230 25 H -0.194 1.194 26 C -0.032 4.032 27 N -0.083 5.083 28 N -0.126 5.126 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.216 0.784 33 H 0.223 0.777 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.849 19.671 6.134 22.050 hybrid contribution 1.352 -0.491 0.705 1.602 sum -6.497 19.180 6.840 21.374 Atomic orbital electron populations 1.20244 0.82489 1.04750 1.04504 1.24778 0.98920 0.84927 0.93573 1.70676 0.96469 1.28607 1.29342 1.22814 0.93765 0.78136 0.97752 1.67783 0.95738 1.36441 1.15776 1.23680 0.95193 0.92048 0.87168 1.23802 1.00456 0.96010 1.04523 1.20554 0.82663 0.94936 0.97053 1.17095 0.83658 0.84681 0.80080 1.90939 1.32812 1.65599 1.46994 1.48357 1.05019 1.09712 1.70065 1.22767 0.83059 0.97294 1.01105 1.23390 0.97579 0.95777 1.03203 1.21594 0.88794 0.85257 0.98067 0.89060 1.43954 1.70687 1.14642 1.02170 1.21377 0.99499 0.97333 0.85593 1.18762 1.06408 1.18198 0.97363 0.90022 1.25411 0.97443 0.96179 0.97291 1.69898 1.28395 1.11913 1.42960 0.86884 0.82071 0.79592 0.80070 1.21402 1.22978 1.19417 1.23074 1.01087 0.76994 1.02010 1.48704 1.06064 1.08606 1.44945 1.79065 0.82755 1.19700 1.31041 0.88991 0.89150 0.88901 0.78411 0.77653 0.90219 0.89920 0.90319 0.89485 0.95898 0.93944 0.94548 0.92461 0.89957 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 36.01 0.38 -0.14 16 2 C 0.26 3.59 8.09 -157.00 -1.27 2.32 16 3 N -0.52 -7.83 11.24 -11.80 -0.13 -7.96 16 4 C 0.44 6.34 8.99 -323.16 -2.91 3.43 16 5 N -0.44 -5.14 10.45 -13.84 -0.14 -5.28 16 6 C 0.21 1.42 11.26 -17.12 -0.19 1.22 16 7 C -0.22 -1.72 8.67 -39.33 -0.34 -2.06 16 8 C 0.17 2.16 6.80 -82.15 -0.56 1.60 16 9 C 0.56 8.32 7.84 -12.39 -0.10 8.22 16 10 O -0.49 -9.31 16.42 5.31 0.09 -9.22 16 11 N -0.60 -7.67 3.34 -172.89 -0.58 -8.25 16 12 C 0.08 0.71 4.91 -2.80 -0.01 0.70 16 13 C -0.16 -1.95 6.48 -24.89 -0.16 -2.11 16 14 C 0.17 2.82 3.53 -65.78 -0.23 2.58 16 15 H 0.09 1.54 7.96 -51.93 -0.41 1.13 16 16 N -0.59 -12.41 2.55 -171.03 -0.44 -12.84 16 17 C 0.11 2.06 8.30 59.85 0.50 2.56 16 18 C -0.28 -7.16 9.87 -15.05 -0.15 -7.31 16 19 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 20 C 0.04 1.03 5.30 -17.43 -0.09 0.94 16 21 N -0.89 -25.81 13.97 55.49 0.78 -25.03 16 22 Si 0.88 20.45 25.12 -169.99 -4.27 16.18 16 23 H -0.29 -6.51 6.62 56.52 0.37 -6.13 16 24 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C 0.09 1.40 6.44 -2.53 -0.02 1.38 16 27 N -0.30 -4.57 3.93 -10.51 -0.04 -4.61 16 28 N -0.29 -4.80 11.84 32.39 0.38 -4.42 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.20 0.31 8.06 -52.48 -0.42 -0.12 16 33 H 0.21 0.96 2.84 -54.56 -0.16 0.80 16 34 H 0.08 0.48 6.83 -51.93 -0.35 0.13 16 35 H 0.08 0.53 6.72 -51.93 -0.35 0.18 16 36 H 0.08 1.01 6.46 -51.93 -0.34 0.67 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.04 0.91 2.91 -51.92 -0.15 0.76 16 40 H 0.04 0.58 6.37 -51.93 -0.33 0.25 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 43 H 0.08 1.18 6.96 -51.93 -0.36 0.82 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -36.32 346.97 -9.28 -45.59 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.99 Total: -2.72 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: -5.16 Total: 13.33 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.17 Total: -68.40 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.27 Total: 16.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.32 -9.28 -45.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972719566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.564 kcal (2) G-P(sol) polarization free energy of solvation -36.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds