Wall clock time and date at job start Tue Mar 31 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32445 * 125.18776 * 2 1 4 4 C 1.32871 * 109.80950 * 180.02562 * 3 2 1 5 5 N 1.33743 * 132.43685 * 180.02562 * 4 3 2 6 6 C 1.31203 * 121.19407 * 179.97438 * 5 4 3 7 7 C 1.40094 * 120.45500 * 359.72114 * 6 5 4 8 8 C 1.36999 * 119.05227 * 0.54612 * 7 6 5 9 9 C 1.47715 * 120.63738 * 179.73513 * 8 7 6 10 10 O 1.21559 * 120.00176 * 171.53895 * 9 8 7 11 11 N 1.34778 * 120.00052 * 351.53419 * 9 8 7 12 12 C 1.47493 * 125.58855 * 5.43183 * 11 9 8 13 13 C 1.54326 * 107.03457 * 181.08216 * 12 11 9 14 14 C 1.55162 * 103.09960 * 22.24019 * 13 12 11 15 15 H 1.08997 * 111.00591 * 82.52475 * 14 13 12 16 16 N 1.46498 * 111.00420 * 206.33566 * 14 13 12 17 17 C 1.46500 * 119.99975 * 59.99848 * 16 14 13 18 18 C 1.36945 * 119.99961 * 239.99967 * 16 14 13 19 19 H 1.07998 * 119.99887 * 324.72245 * 18 16 14 20 20 C 1.38815 * 119.99689 * 144.72074 * 18 16 14 21 21 N 1.31621 * 119.99283 * 155.43516 * 20 18 16 22 22 Si 1.86795 * 120.00391 * 335.43322 * 20 18 16 23 23 H 1.48505 * 109.47212 * 94.83935 * 22 20 18 24 24 H 1.48503 * 109.47236 * 214.84371 * 22 20 18 25 25 H 1.48501 * 109.47114 * 334.84238 * 22 20 18 26 26 C 1.47425 * 125.65393 * 185.49486 * 11 9 8 27 27 N 1.36676 * 107.18561 * 359.97438 * 4 3 2 28 28 N 1.31361 * 125.18306 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46941 * 89.97479 * 1 2 3 30 30 H 1.09003 * 109.47036 * 209.97891 * 1 2 3 31 31 H 1.08999 * 109.47058 * 329.97472 * 1 2 3 32 32 H 1.08006 * 119.77213 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.47584 * 180.30662 * 7 6 5 34 34 H 1.08999 * 110.03648 * 61.72429 * 12 11 9 35 35 H 1.09000 * 109.96145 * 300.40481 * 12 11 9 36 36 H 1.08998 * 110.72225 * 263.79205 * 13 12 11 37 37 H 1.08995 * 110.71925 * 140.68685 * 13 12 11 38 38 H 1.08992 * 109.46930 * 95.33319 * 17 16 14 39 39 H 1.09011 * 109.46905 * 215.32790 * 17 16 14 40 40 H 1.08998 * 109.47199 * 335.32744 * 17 16 14 41 41 H 0.97002 * 119.99165 * 179.97438 * 21 20 18 42 42 H 1.09004 * 110.35754 * 36.99909 * 26 11 9 43 43 H 1.08994 * 110.36910 * 274.67915 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0824 0.0000 4 6 3.5514 0.7301 -0.0006 5 7 4.6833 1.4425 -0.0003 6 6 5.8562 0.8545 -0.0005 7 6 5.9499 -0.5432 0.0049 8 6 4.7995 -1.2871 -0.0010 9 6 4.8575 -2.7632 -0.0014 10 8 3.8402 -3.4115 0.1483 11 7 6.0384 -3.3911 -0.1679 12 6 7.3565 -2.7339 -0.2462 13 6 8.4038 -3.8460 -0.4659 14 6 7.5650 -5.0056 -1.0653 15 1 7.4231 -4.8714 -2.1376 16 7 8.1821 -6.3029 -0.7785 17 6 8.3858 -6.7264 0.6091 18 6 8.5686 -7.1197 -1.8075 19 1 7.9862 -7.1559 -2.7162 20 6 9.7091 -7.9012 -1.6824 21 7 9.8350 -9.0004 -2.3953 22 14 11.0650 -7.3927 -0.5025 23 1 10.8746 -8.0840 0.7980 24 1 12.3840 -7.7666 -1.0734 25 1 11.0145 -5.9233 -0.2939 26 6 6.2258 -4.8472 -0.3029 27 7 3.5945 -0.6360 -0.0003 28 7 2.2639 -1.0736 -0.0005 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 6.7558 1.4524 0.0001 33 1 6.9152 -1.0275 0.0097 34 1 7.5663 -2.2057 0.6838 35 1 7.3753 -2.0364 -1.0836 36 1 8.8534 -4.1448 0.4810 37 1 9.1700 -3.5206 -1.1695 38 1 7.5511 -7.3523 0.9241 39 1 9.3137 -7.2937 0.6833 40 1 8.4445 -5.8482 1.2521 41 1 10.6321 -9.5462 -2.3082 42 1 5.4084 -5.2831 -0.8773 43 1 6.2912 -5.3140 0.6798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972719566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:57 Heat of formation + Delta-G solvation = 149.510222 kcal Electronic energy + Delta-G solvation = -28076.773256 eV Core-core repulsion = 24161.437142 eV Total energy + Delta-G solvation = -3915.336114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.15416 -41.60993 -39.85348 -39.14187 -36.85392 -35.72144 -34.08657 -33.39533 -32.29039 -31.61566 -30.17364 -29.54784 -28.10947 -27.11854 -25.36631 -25.00165 -23.86235 -22.66722 -21.12054 -20.94919 -19.71313 -19.29746 -19.02977 -18.28837 -18.07639 -17.74960 -17.03020 -16.83753 -16.29153 -15.82816 -15.30362 -14.92338 -14.83143 -14.75337 -14.69771 -14.57584 -14.37885 -14.11956 -14.03664 -13.97217 -13.56648 -13.41215 -13.35557 -12.99672 -12.83854 -12.46421 -12.35577 -12.26293 -12.04330 -11.83893 -11.58104 -11.40747 -11.39855 -10.96983 -10.77120 -10.62629 -10.14903 -9.91989 -8.85105 -8.20064 -5.57885 -1.17510 -0.46200 0.50329 1.07812 1.37252 1.40099 1.47285 1.59520 1.59905 2.11672 2.23689 2.45514 2.68255 2.89689 3.02149 3.27205 3.41936 3.61307 3.70406 3.78193 3.87545 4.06809 4.13475 4.23567 4.36939 4.49978 4.55148 4.59065 4.61702 4.66159 4.70649 4.72454 4.75480 4.85087 4.91815 4.99819 5.04750 5.10626 5.21942 5.27941 5.36594 5.90100 6.10531 6.16577 6.18731 6.64308 6.68154 6.93826 7.59890 7.98760 8.99465 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026425 B = 0.002734 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.330982 B =10237.174173 C =10946.383223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.252 3.748 3 N -0.548 5.548 4 C 0.422 3.578 5 N -0.463 5.463 6 C 0.230 3.770 7 C -0.174 4.174 8 C 0.127 3.873 9 C 0.559 3.441 10 O -0.550 6.550 11 N -0.590 5.590 12 C 0.074 3.926 13 C -0.147 4.147 14 C 0.164 3.836 15 H 0.076 0.924 16 N -0.606 5.606 17 C 0.104 3.896 18 C -0.267 4.267 19 H 0.038 0.962 20 C -0.024 4.024 21 N -0.949 5.949 22 Si 0.954 3.046 23 H -0.280 1.280 24 H -0.315 1.315 25 H -0.236 1.236 26 C 0.101 3.899 27 N -0.316 5.316 28 N -0.346 5.346 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.247 0.753 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.015 0.985 39 H 0.026 0.974 40 H 0.079 0.921 41 H 0.263 0.737 42 H 0.051 0.949 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 23.810 7.966 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.028 4.028 3 N -0.282 5.282 4 C 0.062 3.938 5 N -0.179 5.179 6 C 0.045 3.955 7 C -0.198 4.198 8 C 0.007 3.993 9 C 0.346 3.654 10 O -0.427 6.427 11 N -0.324 5.324 12 C -0.046 4.046 13 C -0.186 4.186 14 C 0.056 3.944 15 H 0.095 0.905 16 N -0.328 5.328 17 C -0.040 4.040 18 C -0.397 4.397 19 H 0.056 0.944 20 C -0.221 4.221 21 N -0.593 5.593 22 Si 0.782 3.218 23 H -0.208 1.208 24 H -0.244 1.244 25 H -0.159 1.159 26 C -0.024 4.024 27 N -0.098 5.098 28 N -0.178 5.178 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.282 0.718 33 H 0.262 0.738 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.950 23.863 8.015 25.655 hybrid contribution 0.471 -1.756 0.063 1.819 sum -4.479 22.107 8.078 23.959 Atomic orbital electron populations 1.20446 0.79769 1.05788 1.05734 1.25538 1.00495 0.84229 0.92528 1.70635 0.97371 1.29377 1.30807 1.23208 0.94587 0.78226 0.97756 1.67968 0.96147 1.36575 1.17179 1.24909 0.95543 0.92131 0.82949 1.24401 0.99831 0.96228 0.99307 1.20636 0.83549 0.93866 1.01254 1.17455 0.83180 0.85755 0.79055 1.90906 1.34889 1.67071 1.49845 1.48299 1.06245 1.08695 1.69115 1.23224 0.79395 0.96759 1.05227 1.23244 0.97898 0.94228 1.03270 1.21649 0.89760 0.85084 0.97920 0.90539 1.43944 1.70943 1.16265 1.01696 1.21444 0.98314 0.98972 0.85268 1.18611 1.05462 1.18487 0.97093 0.94376 1.26121 0.99998 0.95932 1.00057 1.70054 1.29098 1.13672 1.46456 0.85739 0.77520 0.80938 0.77562 1.20765 1.24409 1.15893 1.22729 0.99511 0.78975 1.01149 1.48694 1.06139 1.08971 1.45953 1.78934 0.84095 1.21595 1.33207 0.87521 0.88588 0.87245 0.71811 0.73822 0.85309 0.86126 0.89782 0.87909 0.96636 0.95540 0.90270 0.92786 0.93086 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.51 71.24 0.75 -0.28 16 2 C 0.25 7.25 8.09 138.68 1.12 8.37 16 3 N -0.55 -16.70 11.24 -191.24 -2.15 -18.85 16 4 C 0.42 11.85 8.99 261.61 2.35 14.21 16 5 N -0.46 -9.12 10.45 -197.70 -2.07 -11.18 16 6 C 0.23 1.68 11.26 85.24 0.96 2.64 16 7 C -0.17 -1.63 8.67 22.43 0.19 -1.43 16 8 C 0.13 2.93 6.80 40.56 0.28 3.20 16 9 C 0.56 16.10 7.84 86.75 0.68 16.78 16 10 O -0.55 -21.84 16.42 -3.90 -0.06 -21.91 16 11 N -0.59 -13.61 3.34 -819.17 -2.73 -16.34 16 12 C 0.07 0.84 4.91 86.64 0.43 1.26 16 13 C -0.15 -2.79 6.48 31.79 0.21 -2.58 16 14 C 0.16 5.08 3.53 46.38 0.16 5.24 16 15 H 0.08 2.57 7.96 -2.39 -0.02 2.55 16 16 N -0.61 -24.84 2.55 -695.02 -1.77 -26.62 16 17 C 0.10 3.81 8.30 127.77 1.06 4.87 16 18 C -0.27 -14.05 9.87 84.03 0.83 -13.22 16 19 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 20 C -0.02 -1.33 5.30 84.86 0.45 -0.88 16 21 N -0.95 -57.20 13.97 21.65 0.30 -56.89 16 22 Si 0.95 41.73 25.12 68.60 1.72 43.45 16 23 H -0.28 -11.87 6.62 99.48 0.66 -11.21 16 24 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.24 -8.93 7.11 99.48 0.71 -8.23 16 26 C 0.10 3.01 6.44 86.85 0.56 3.57 16 27 N -0.32 -9.47 3.93 -187.17 -0.74 -10.20 16 28 N -0.35 -11.81 11.84 -51.45 -0.61 -12.42 16 29 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.27 -1.70 8.06 -2.91 -0.02 -1.73 16 33 H 0.25 0.12 2.84 -4.86 -0.01 0.11 16 34 H 0.13 0.37 6.83 -2.39 -0.02 0.36 16 35 H 0.12 0.57 6.72 -2.39 -0.02 0.55 16 36 H 0.08 1.58 6.46 -2.39 -0.02 1.57 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.03 1.07 2.91 -2.38 -0.01 1.06 16 40 H 0.08 2.21 6.37 -2.39 -0.02 2.19 16 41 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16 43 H 0.07 2.23 6.96 -2.39 -0.02 2.21 16 Total: -1.00 -91.28 346.97 2.94 -88.34 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: 1.02 Total: 0.86 kcal Atomic # 6 Polarization: 31.73 SS G_CDS: 10.03 Total: 41.75 kcal Atomic # 7 Polarization: -142.74 SS G_CDS: -9.76 Total: -152.50 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.72 Total: 43.45 kcal Total: -91.28 2.94 -88.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972719566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.850 kcal (2) G-P(sol) polarization free energy of solvation -91.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds