Wall clock time and date at job start Tue Mar 31 2020 05:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32446 * 125.18661 * 2 1 4 4 C 1.32872 * 109.80865 * 180.02562 * 3 2 1 5 5 N 1.33744 * 132.43209 * 179.97438 * 4 3 2 6 6 C 1.31202 * 121.19024 * 179.97438 * 5 4 3 7 7 C 1.40104 * 120.45637 * 0.02562 * 6 5 4 8 8 C 1.36991 * 119.05366 * 359.97438 * 7 6 5 9 9 C 1.47711 * 120.63532 * 179.97438 * 8 7 6 10 10 O 1.21560 * 120.00313 * 173.92436 * 9 8 7 11 11 N 1.34779 * 120.00147 * 353.92637 * 9 8 7 12 12 C 1.47023 * 125.64439 * 5.87697 * 11 9 8 13 13 C 1.54337 * 107.26501 * 178.84947 * 12 11 9 14 14 C 1.55162 * 103.01836 * 338.14226 * 13 12 11 15 15 H 1.09003 * 111.03101 * 277.21680 * 14 13 12 16 16 N 1.46503 * 111.00373 * 153.38197 * 14 13 12 17 17 C 1.46494 * 119.99749 * 306.34725 * 16 14 13 18 18 C 1.36933 * 119.99836 * 126.34622 * 16 14 13 19 19 H 1.08004 * 120.00340 * 310.99524 * 18 16 14 20 20 C 1.38813 * 119.99870 * 130.99543 * 18 16 14 21 21 N 1.31621 * 120.00062 * 181.70929 * 20 18 16 22 22 Si 1.86800 * 120.00076 * 1.71392 * 20 18 16 23 23 H 1.48494 * 109.47251 * 93.96782 * 22 20 18 24 24 H 1.48496 * 109.47204 * 213.96970 * 22 20 18 25 25 H 1.48504 * 109.46854 * 333.96809 * 22 20 18 26 26 C 1.47422 * 125.65136 * 186.18220 * 11 9 8 27 27 N 1.36679 * 107.18602 * 359.97438 * 4 3 2 28 28 N 1.31361 * 125.18361 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46890 * 90.03018 * 1 2 3 30 30 H 1.09000 * 109.46913 * 210.02974 * 1 2 3 31 31 H 1.08997 * 109.46988 * 330.02539 * 1 2 3 32 32 H 1.08009 * 119.77132 * 180.27445 * 6 5 4 33 33 H 1.08001 * 120.47045 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.87971 * 298.39268 * 12 11 9 35 35 H 1.08995 * 109.88643 * 59.56051 * 12 11 9 36 36 H 1.08993 * 110.85284 * 219.67427 * 13 12 11 37 37 H 1.09002 * 110.66806 * 96.51638 * 13 12 11 38 38 H 1.08997 * 109.47369 * 94.41495 * 17 16 14 39 39 H 1.09008 * 109.47023 * 214.40900 * 17 16 14 40 40 H 1.08994 * 109.47500 * 334.40714 * 17 16 14 41 41 H 0.96999 * 119.99873 * 179.97438 * 21 20 18 42 42 H 1.09004 * 110.36831 * 322.93413 * 26 11 9 43 43 H 1.08999 * 110.36741 * 85.14217 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0825 0.0000 4 6 3.5514 0.7301 -0.0006 5 7 4.6833 1.4426 -0.0012 6 6 5.8562 0.8547 -0.0012 7 6 5.9499 -0.5432 -0.0010 8 6 4.7996 -1.2871 -0.0003 9 6 4.8577 -2.7631 -0.0006 10 8 3.8357 -3.4117 0.1114 11 7 6.0439 -3.3908 -0.1251 12 6 7.3609 -2.7376 -0.1457 13 6 8.4222 -3.8506 -0.2754 14 6 7.6743 -5.1086 0.2400 15 1 7.7000 -5.1604 1.3285 16 7 8.2269 -6.3283 -0.3542 17 6 8.3378 -6.4486 -1.8100 18 6 8.6399 -7.3559 0.4512 19 1 9.2896 -7.1565 1.2906 20 6 8.2235 -8.6538 0.1887 21 7 8.5929 -9.6367 0.9823 22 14 7.1388 -9.0055 -1.2909 23 1 7.9873 -9.3990 -2.4443 24 1 6.2016 -10.1106 -0.9661 25 1 6.3652 -7.7865 -1.6385 26 6 6.2353 -4.8454 -0.2695 27 7 3.5945 -0.6360 -0.0003 28 7 2.2639 -1.0736 0.0005 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 6.7557 1.4526 0.0027 33 1 6.9154 -1.0273 -0.0005 34 1 7.4254 -2.0601 -0.9972 35 1 7.5159 -2.1864 0.7818 36 1 9.2892 -3.6347 0.3489 37 1 8.7203 -3.9786 -1.3160 38 1 9.3357 -6.1435 -2.1249 39 1 8.1651 -7.4842 -2.1032 40 1 7.5951 -5.8078 -2.2852 41 1 8.3016 -10.5436 0.7991 42 1 5.5119 -5.3857 0.3411 43 1 6.1419 -5.1383 -1.3152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972719569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:01 Heat of formation + Delta-G solvation = 175.517398 kcal Electronic energy + Delta-G solvation = -28178.146393 eV Core-core repulsion = 24263.938035 eV Total energy + Delta-G solvation = -3914.208358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.23670 -40.55196 -38.95154 -37.88926 -35.38306 -34.78874 -32.85506 -31.98158 -31.18243 -30.52708 -29.29188 -28.49913 -26.50539 -25.97596 -24.51219 -23.63712 -22.63460 -21.73511 -20.02039 -19.68487 -18.85096 -18.37804 -17.34148 -17.22783 -17.04685 -16.39058 -15.98729 -15.46508 -15.35647 -14.45125 -14.12939 -14.03846 -13.94402 -13.79053 -13.70141 -13.14807 -13.00192 -12.91861 -12.77060 -12.67619 -12.57834 -12.50751 -12.02328 -11.93943 -11.76058 -11.08269 -11.04629 -10.78485 -10.76780 -10.40137 -10.37684 -10.02507 -10.01045 -9.87613 -9.56298 -9.16914 -8.80668 -8.71642 -6.89252 -6.11443 -3.79846 -0.35325 0.33649 1.39117 2.02195 2.47635 2.63415 2.89660 3.09530 3.20671 3.34604 3.38166 3.62961 3.67387 4.17949 4.27352 4.35216 4.43279 4.58649 4.69474 4.77235 4.91883 5.00053 5.16589 5.21458 5.22909 5.26724 5.38300 5.43513 5.50702 5.63187 5.74009 5.85965 5.89553 5.96525 6.00776 6.08912 6.11089 6.20539 6.39355 6.49012 6.59681 6.99094 7.18283 7.61181 7.75685 7.96942 8.26196 8.75813 9.49137 9.90592 10.99473 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.002989 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.530958 B = 9366.943817 C =10305.701407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.258 3.742 3 N -0.518 5.518 4 C 0.435 3.565 5 N -0.443 5.443 6 C 0.206 3.794 7 C -0.225 4.225 8 C 0.171 3.829 9 C 0.559 3.441 10 O -0.490 6.490 11 N -0.596 5.596 12 C 0.080 3.920 13 C -0.152 4.152 14 C 0.175 3.825 15 H 0.093 0.907 16 N -0.596 5.596 17 C 0.112 3.888 18 C -0.285 4.285 19 H 0.080 0.920 20 C 0.042 3.958 21 N -0.900 5.900 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.269 1.269 26 C 0.082 3.918 27 N -0.302 5.302 28 N -0.294 5.294 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.199 0.801 33 H 0.209 0.791 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.021 0.979 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.266 0.734 42 H 0.083 0.917 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 21.089 -3.577 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.022 4.022 3 N -0.251 5.251 4 C 0.075 3.925 5 N -0.158 5.158 6 C 0.019 3.981 7 C -0.249 4.249 8 C 0.048 3.952 9 C 0.343 3.657 10 O -0.362 6.362 11 N -0.331 5.331 12 C -0.042 4.042 13 C -0.192 4.192 14 C 0.066 3.934 15 H 0.111 0.889 16 N -0.318 5.318 17 C -0.032 4.032 18 C -0.413 4.413 19 H 0.098 0.902 20 C -0.160 4.160 21 N -0.540 5.540 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.232 1.232 25 H -0.194 1.194 26 C -0.041 4.041 27 N -0.083 5.083 28 N -0.125 5.125 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.216 0.784 33 H 0.225 0.775 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.620 21.039 -3.472 22.052 hybrid contribution -0.152 -1.056 -0.915 1.406 sum -5.772 19.983 -4.387 21.257 Atomic orbital electron populations 1.20242 0.82501 1.04778 1.04460 1.24779 0.98921 0.84934 0.93606 1.70674 0.96472 1.28605 1.29353 1.22815 0.93767 0.78148 0.97769 1.67781 0.95740 1.36441 1.15814 1.23682 0.95185 0.92055 0.87187 1.23837 1.00509 0.95996 1.04593 1.20595 0.82655 0.94982 0.96946 1.17145 0.83818 0.84660 0.80068 1.90942 1.32645 1.65575 1.47085 1.48296 1.04509 1.09928 1.70375 1.22666 0.83115 0.97193 1.01227 1.23245 0.97269 0.95215 1.03430 1.21683 0.87580 0.86131 0.98043 0.88897 1.43852 1.71102 1.15836 1.00972 1.21381 0.97928 0.98437 0.85451 1.18727 1.26148 0.85256 1.11213 0.90208 1.25710 0.96170 0.96710 0.97432 1.69764 1.46494 1.00377 1.37342 0.86540 0.80523 0.76980 0.82220 1.21360 1.23169 1.19379 1.23353 1.01634 0.76793 1.02318 1.48710 1.06075 1.08603 1.44945 1.79076 0.82770 1.19692 1.30972 0.89039 0.89138 0.88888 0.78412 0.77546 0.90278 0.89945 0.89491 0.90196 0.96084 0.95061 0.94544 0.92376 0.89871 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.26 3.66 8.09 -157.00 -1.27 2.39 16 3 N -0.52 -7.94 11.24 -11.80 -0.13 -8.07 16 4 C 0.44 6.41 8.99 -323.15 -2.91 3.51 16 5 N -0.44 -5.18 10.45 -13.84 -0.14 -5.32 16 6 C 0.21 1.42 11.26 -17.12 -0.19 1.23 16 7 C -0.22 -1.74 8.69 -39.33 -0.34 -2.09 16 8 C 0.17 2.21 6.81 -82.15 -0.56 1.65 16 9 C 0.56 8.64 7.84 -12.39 -0.10 8.54 16 10 O -0.49 -9.72 16.34 5.31 0.09 -9.64 16 11 N -0.60 -8.00 3.33 -174.16 -0.58 -8.57 16 12 C 0.08 0.70 4.88 -3.06 -0.01 0.69 16 13 C -0.15 -1.72 6.51 -24.89 -0.16 -1.88 16 14 C 0.18 2.90 3.54 -65.78 -0.23 2.67 16 15 H 0.09 1.62 7.96 -51.93 -0.41 1.20 16 16 N -0.60 -12.46 2.50 -171.03 -0.43 -12.89 16 17 C 0.11 2.14 7.74 59.84 0.46 2.60 16 18 C -0.28 -7.33 9.92 -15.06 -0.15 -7.48 16 19 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 20 C 0.04 1.16 5.50 -17.43 -0.10 1.06 16 21 N -0.90 -26.36 13.97 55.49 0.78 -25.59 16 22 Si 0.91 21.65 24.71 -169.99 -4.20 17.45 16 23 H -0.29 -6.68 7.08 56.52 0.40 -6.28 16 24 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 25 H -0.27 -6.12 6.31 56.52 0.36 -5.76 16 26 C 0.08 1.35 6.49 -2.53 -0.02 1.34 16 27 N -0.30 -4.67 3.93 -10.51 -0.04 -4.71 16 28 N -0.29 -4.91 11.83 32.39 0.38 -4.52 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.20 0.29 8.06 -52.48 -0.42 -0.13 16 33 H 0.21 0.95 2.79 -55.71 -0.16 0.79 16 34 H 0.08 0.47 6.69 -51.93 -0.35 0.12 16 35 H 0.08 0.50 6.85 -51.93 -0.36 0.14 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.91 7.09 -51.93 -0.37 0.55 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.67 2.84 -51.92 -0.15 0.52 16 40 H 0.04 0.61 6.34 -51.93 -0.33 0.28 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 1.56 7.98 -51.93 -0.41 1.14 16 43 H 0.07 1.24 6.33 -51.93 -0.33 0.92 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -36.88 345.56 -9.27 -46.15 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.00 Total: -3.56 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: -5.20 Total: 14.05 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -0.17 Total: -69.67 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.20 Total: 17.45 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.88 -9.27 -46.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972719569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.671 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds