Wall clock time and date at job start Tue Mar 31 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32446 * 125.18661 * 2 1 4 4 C 1.32872 * 109.80865 * 180.02562 * 3 2 1 5 5 N 1.33744 * 132.43209 * 179.97438 * 4 3 2 6 6 C 1.31202 * 121.19024 * 179.97438 * 5 4 3 7 7 C 1.40104 * 120.45637 * 0.02562 * 6 5 4 8 8 C 1.36991 * 119.05366 * 359.97438 * 7 6 5 9 9 C 1.47711 * 120.63532 * 179.97438 * 8 7 6 10 10 O 1.21560 * 120.00313 * 173.92436 * 9 8 7 11 11 N 1.34779 * 120.00147 * 353.92637 * 9 8 7 12 12 C 1.47023 * 125.64439 * 5.87697 * 11 9 8 13 13 C 1.54337 * 107.26501 * 178.84947 * 12 11 9 14 14 C 1.55162 * 103.01836 * 338.14226 * 13 12 11 15 15 H 1.09003 * 111.03101 * 277.21680 * 14 13 12 16 16 N 1.46503 * 111.00373 * 153.38197 * 14 13 12 17 17 C 1.46494 * 119.99749 * 306.34725 * 16 14 13 18 18 C 1.36933 * 119.99836 * 126.34622 * 16 14 13 19 19 H 1.08004 * 120.00340 * 310.99524 * 18 16 14 20 20 C 1.38813 * 119.99870 * 130.99543 * 18 16 14 21 21 N 1.31621 * 120.00062 * 181.70929 * 20 18 16 22 22 Si 1.86800 * 120.00076 * 1.71392 * 20 18 16 23 23 H 1.48494 * 109.47251 * 93.96782 * 22 20 18 24 24 H 1.48496 * 109.47204 * 213.96970 * 22 20 18 25 25 H 1.48504 * 109.46854 * 333.96809 * 22 20 18 26 26 C 1.47422 * 125.65136 * 186.18220 * 11 9 8 27 27 N 1.36679 * 107.18602 * 359.97438 * 4 3 2 28 28 N 1.31361 * 125.18361 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46890 * 90.03018 * 1 2 3 30 30 H 1.09000 * 109.46913 * 210.02974 * 1 2 3 31 31 H 1.08997 * 109.46988 * 330.02539 * 1 2 3 32 32 H 1.08009 * 119.77132 * 180.27445 * 6 5 4 33 33 H 1.08001 * 120.47045 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.87971 * 298.39268 * 12 11 9 35 35 H 1.08995 * 109.88643 * 59.56051 * 12 11 9 36 36 H 1.08993 * 110.85284 * 219.67427 * 13 12 11 37 37 H 1.09002 * 110.66806 * 96.51638 * 13 12 11 38 38 H 1.08997 * 109.47369 * 94.41495 * 17 16 14 39 39 H 1.09008 * 109.47023 * 214.40900 * 17 16 14 40 40 H 1.08994 * 109.47500 * 334.40714 * 17 16 14 41 41 H 0.96999 * 119.99873 * 179.97438 * 21 20 18 42 42 H 1.09004 * 110.36831 * 322.93413 * 26 11 9 43 43 H 1.08999 * 110.36741 * 85.14217 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2702 1.0825 0.0000 4 6 3.5514 0.7301 -0.0006 5 7 4.6833 1.4426 -0.0012 6 6 5.8562 0.8547 -0.0012 7 6 5.9499 -0.5432 -0.0010 8 6 4.7996 -1.2871 -0.0003 9 6 4.8577 -2.7631 -0.0006 10 8 3.8357 -3.4117 0.1114 11 7 6.0439 -3.3908 -0.1251 12 6 7.3609 -2.7376 -0.1457 13 6 8.4222 -3.8506 -0.2754 14 6 7.6743 -5.1086 0.2400 15 1 7.7000 -5.1604 1.3285 16 7 8.2269 -6.3283 -0.3542 17 6 8.3378 -6.4486 -1.8100 18 6 8.6399 -7.3559 0.4512 19 1 9.2896 -7.1565 1.2906 20 6 8.2235 -8.6538 0.1887 21 7 8.5929 -9.6367 0.9823 22 14 7.1388 -9.0055 -1.2909 23 1 7.9873 -9.3990 -2.4443 24 1 6.2016 -10.1106 -0.9661 25 1 6.3652 -7.7865 -1.6385 26 6 6.2353 -4.8454 -0.2695 27 7 3.5945 -0.6360 -0.0003 28 7 2.2639 -1.0736 0.0005 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 6.7557 1.4526 0.0027 33 1 6.9154 -1.0273 -0.0005 34 1 7.4254 -2.0601 -0.9972 35 1 7.5159 -2.1864 0.7818 36 1 9.2892 -3.6347 0.3489 37 1 8.7203 -3.9786 -1.3160 38 1 9.3357 -6.1435 -2.1249 39 1 8.1651 -7.4842 -2.1032 40 1 7.5951 -5.8078 -2.2852 41 1 8.3016 -10.5436 0.7991 42 1 5.5119 -5.3857 0.3411 43 1 6.1419 -5.1383 -1.3152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972719569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:00 Heat of formation + Delta-G solvation = 149.262042 kcal Electronic energy + Delta-G solvation = -28179.284911 eV Core-core repulsion = 24263.938035 eV Total energy + Delta-G solvation = -3915.346876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.15811 -41.62972 -39.85680 -39.14575 -36.87387 -35.72315 -34.11343 -33.43146 -32.31486 -31.62698 -30.18087 -29.53735 -28.11815 -27.14567 -25.36096 -25.05761 -23.78513 -22.68589 -21.17251 -20.94262 -19.71592 -19.29931 -19.07144 -18.29634 -18.10872 -17.79323 -17.08178 -16.81489 -16.33463 -15.76346 -15.42966 -14.83998 -14.82137 -14.77541 -14.75076 -14.64402 -14.41413 -14.04741 -14.01230 -13.96912 -13.56783 -13.39074 -13.34361 -13.24914 -12.84489 -12.57152 -12.39261 -12.19138 -12.02832 -11.85741 -11.50697 -11.41160 -11.30647 -10.96352 -10.77849 -10.77154 -10.15430 -9.91013 -8.65516 -8.18402 -5.85064 -1.17906 -0.46177 0.50487 1.07154 1.27251 1.39268 1.40864 1.46521 1.58734 2.11404 2.23533 2.35522 2.69387 2.89864 3.08125 3.23404 3.41385 3.60647 3.71511 3.80146 3.88140 4.08321 4.15161 4.20236 4.40498 4.48879 4.53657 4.58091 4.60772 4.65867 4.67368 4.70752 4.80676 4.87294 4.91728 5.00972 5.02279 5.10342 5.21156 5.30708 5.38822 5.95429 6.11717 6.18590 6.21939 6.64334 6.67775 6.96392 7.52630 7.99013 8.93781 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.002989 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.530958 B = 9366.943817 C =10305.701407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.252 3.748 3 N -0.547 5.547 4 C 0.422 3.578 5 N -0.463 5.463 6 C 0.231 3.769 7 C -0.173 4.173 8 C 0.126 3.874 9 C 0.557 3.443 10 O -0.553 6.553 11 N -0.590 5.590 12 C 0.071 3.929 13 C -0.135 4.135 14 C 0.166 3.834 15 H 0.075 0.925 16 N -0.610 5.610 17 C 0.109 3.891 18 C -0.263 4.263 19 H 0.048 0.952 20 C -0.017 4.017 21 N -0.952 5.952 22 Si 0.963 3.037 23 H -0.275 1.275 24 H -0.321 1.321 25 H -0.254 1.254 26 C 0.090 3.910 27 N -0.317 5.317 28 N -0.347 5.347 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.268 0.732 33 H 0.248 0.752 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.009 0.991 40 H 0.064 0.936 41 H 0.263 0.737 42 H 0.045 0.955 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 25.189 -5.147 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.028 4.028 3 N -0.281 5.281 4 C 0.062 3.938 5 N -0.178 5.178 6 C 0.045 3.955 7 C -0.197 4.197 8 C 0.006 3.994 9 C 0.343 3.657 10 O -0.430 6.430 11 N -0.323 5.323 12 C -0.049 4.049 13 C -0.174 4.174 14 C 0.058 3.942 15 H 0.094 0.906 16 N -0.333 5.333 17 C -0.034 4.034 18 C -0.393 4.393 19 H 0.066 0.934 20 C -0.215 4.215 21 N -0.595 5.595 22 Si 0.794 3.206 23 H -0.202 1.202 24 H -0.251 1.251 25 H -0.179 1.179 26 C -0.034 4.034 27 N -0.098 5.098 28 N -0.179 5.179 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.283 0.717 33 H 0.264 0.736 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.269 25.204 -5.065 25.915 hybrid contribution -0.650 -2.193 -0.365 2.317 sum -3.919 23.011 -5.430 23.965 Atomic orbital electron populations 1.20443 0.79792 1.05749 1.05746 1.25536 1.00492 0.84241 0.92561 1.70634 0.97370 1.29332 1.30805 1.23218 0.94610 0.78191 0.97751 1.67973 0.96134 1.36540 1.17173 1.24938 0.95555 0.92091 0.82885 1.24461 0.99853 0.96240 0.99160 1.20633 0.83606 0.93735 1.01381 1.17542 0.83324 0.85865 0.78969 1.90907 1.34862 1.67146 1.50080 1.48223 1.05928 1.08742 1.69399 1.23176 0.79316 0.96965 1.05405 1.23122 0.97966 0.92324 1.03990 1.21752 0.88448 0.86782 0.97247 0.90628 1.43919 1.71854 1.16034 1.01543 1.21442 1.00092 0.97743 0.84109 1.18625 1.24053 0.86439 1.10159 0.93431 1.26396 0.98026 0.96901 1.00130 1.69900 1.49129 1.00722 1.39779 0.85618 0.78850 0.76539 0.79639 1.20188 1.25111 1.17851 1.22955 1.00514 0.78899 1.01081 1.48694 1.06122 1.08994 1.45990 1.78944 0.84157 1.21647 1.33192 0.87451 0.88709 0.87231 0.71666 0.73634 0.85508 0.85893 0.87353 0.89360 0.93899 0.97274 0.91790 0.92776 0.93657 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.51 71.24 0.75 -0.31 16 2 C 0.25 7.38 8.09 138.68 1.12 8.50 16 3 N -0.55 -16.86 11.24 -191.24 -2.15 -19.01 16 4 C 0.42 11.97 8.99 261.61 2.35 14.33 16 5 N -0.46 -9.12 10.45 -197.69 -2.07 -11.18 16 6 C 0.23 1.66 11.26 85.24 0.96 2.62 16 7 C -0.17 -1.64 8.69 22.43 0.19 -1.44 16 8 C 0.13 2.99 6.81 40.55 0.28 3.26 16 9 C 0.56 16.75 7.84 86.75 0.68 17.43 16 10 O -0.55 -23.02 16.34 -3.90 -0.06 -23.08 16 11 N -0.59 -14.28 3.33 -823.18 -2.74 -17.02 16 12 C 0.07 0.79 4.88 86.73 0.42 1.21 16 13 C -0.13 -2.35 6.51 31.79 0.21 -2.14 16 14 C 0.17 5.20 3.54 46.38 0.16 5.36 16 15 H 0.08 2.60 7.96 -2.39 -0.02 2.58 16 16 N -0.61 -24.81 2.50 -695.03 -1.74 -26.54 16 17 C 0.11 3.89 7.74 127.77 0.99 4.88 16 18 C -0.26 -13.74 9.92 84.03 0.83 -12.91 16 19 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 20 C -0.02 -0.97 5.50 84.86 0.47 -0.50 16 21 N -0.95 -58.05 13.97 21.65 0.30 -57.75 16 22 Si 0.96 45.68 24.71 68.60 1.70 47.38 16 23 H -0.28 -12.39 7.08 99.48 0.70 -11.68 16 24 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 25 H -0.25 -11.22 6.31 99.48 0.63 -10.60 16 26 C 0.09 2.90 6.49 86.85 0.56 3.46 16 27 N -0.32 -9.66 3.93 -187.17 -0.74 -10.40 16 28 N -0.35 -12.11 11.83 -51.44 -0.61 -12.72 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.27 -1.81 8.06 -2.91 -0.02 -1.84 16 33 H 0.25 0.10 2.79 -5.94 -0.02 0.08 16 34 H 0.13 0.37 6.69 -2.39 -0.02 0.35 16 35 H 0.12 0.49 6.85 -2.39 -0.02 0.48 16 36 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.48 7.09 -2.39 -0.02 1.46 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.01 0.37 2.84 -2.38 -0.01 0.36 16 40 H 0.06 1.91 6.34 -2.39 -0.02 1.89 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.04 1.78 7.98 -2.39 -0.02 1.76 16 43 H 0.07 2.23 6.33 -2.39 -0.02 2.22 16 Total: -1.00 -92.93 345.56 2.87 -90.06 By element: Atomic # 1 Polarization: -4.46 SS G_CDS: 0.98 Total: -3.48 kcal Atomic # 6 Polarization: 33.77 SS G_CDS: 9.98 Total: 43.75 kcal Atomic # 7 Polarization: -144.90 SS G_CDS: -9.73 Total: -154.63 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.06 Total: -23.08 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.70 Total: 47.38 kcal Total: -92.93 2.87 -90.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972719569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.320 kcal (2) G-P(sol) polarization free energy of solvation -92.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds