Wall clock time and date at job start Tue Mar 31 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 110.91358 * 2 1 4 4 C 1.54908 * 111.00491 * 236.09898 * 2 1 3 5 5 N 1.47425 * 104.83111 * 204.91173 * 4 2 1 6 6 C 1.36941 * 125.64700 * 204.16262 * 5 4 2 7 7 H 1.07994 * 119.99991 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99750 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00221 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99904 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47034 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47073 * 119.99819 * 10 8 6 13 13 H 1.48493 * 109.47212 * 240.00230 * 10 8 6 14 14 C 1.47017 * 108.70289 * 24.13100 * 5 4 2 15 15 C 1.54321 * 107.27215 * 358.93657 * 14 5 4 16 16 H 1.08997 * 110.72003 * 219.26745 * 15 14 5 17 17 N 1.46504 * 110.72045 * 96.17271 * 15 14 5 18 18 C 1.34776 * 119.99913 * 86.45302 * 17 15 14 19 19 O 1.21623 * 120.00129 * 359.97438 * 18 17 15 20 20 C 1.47315 * 119.99878 * 180.02562 * 18 17 15 21 21 C 1.39004 * 120.90470 * 0.28047 * 20 18 17 22 22 C 1.39719 * 119.29180 * 180.26235 * 21 20 18 23 23 C 1.35258 * 121.07653 * 359.44907 * 22 21 20 24 24 N 1.35719 * 121.57640 * 0.27382 * 23 22 21 25 25 N 1.40208 * 134.09004 * 180.02562 * 24 23 22 26 26 N 1.29020 * 106.95708 * 179.97438 * 25 24 23 27 27 N 1.28587 * 110.78716 * 0.02562 * 26 25 24 28 28 C 1.32045 * 110.21687 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47055 * 296.09347 * 1 2 3 30 30 H 1.08999 * 109.47396 * 56.09937 * 1 2 3 31 31 H 1.08999 * 109.46503 * 176.09808 * 1 2 3 32 32 H 1.09003 * 109.46996 * 183.90462 * 3 2 1 33 33 H 1.09000 * 109.46586 * 303.90002 * 3 2 1 34 34 H 1.08993 * 109.46961 * 63.90438 * 3 2 1 35 35 H 1.08999 * 110.36692 * 86.07470 * 4 2 1 36 36 H 1.08998 * 110.36801 * 323.75083 * 4 2 1 37 37 H 0.96999 * 120.00227 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.87968 * 239.51822 * 14 5 4 39 39 H 1.09003 * 109.88344 * 118.35754 * 14 5 4 40 40 H 0.97003 * 120.00109 * 266.45821 * 17 15 14 41 41 H 1.08003 * 120.35745 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.46489 * 179.73073 * 22 21 20 43 43 H 1.08005 * 119.21363 * 180.25794 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4293 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2429 -0.7733 6 6 4.4645 -1.5652 -1.6072 7 1 4.3339 -1.5099 -2.6778 8 6 5.6839 -1.9630 -1.0764 9 7 5.8429 -2.0308 0.2284 10 14 7.0987 -2.4033 -2.2139 11 1 6.6659 -2.2466 -3.6257 12 1 8.2480 -1.5019 -1.9461 13 1 7.5070 -3.8107 -1.9741 14 6 3.4675 -1.2740 0.6960 15 6 2.0862 -0.8078 1.2022 16 1 2.1921 -0.1724 2.0814 17 7 1.2269 -1.9574 1.4962 18 6 1.2808 -2.5468 2.7071 19 8 2.0432 -2.1247 3.5555 20 6 0.4172 -3.7031 3.0025 21 6 -0.4560 -4.2052 2.0446 22 6 -1.2639 -5.2999 2.3628 23 6 -1.2009 -5.8831 3.5816 24 7 -0.3588 -5.4290 4.5442 25 7 -0.0823 -5.8196 5.8620 26 7 0.8226 -5.0167 6.3105 27 7 1.1515 -4.1541 5.4154 28 6 0.4593 -4.3576 4.3095 29 1 -0.3633 0.4520 0.9229 30 1 -0.3634 0.5732 -0.8529 31 1 -0.3632 -1.0253 -0.0699 32 1 3.1636 1.4027 -0.0700 33 1 1.6704 1.9732 -0.8530 34 1 1.7836 1.9300 0.9229 35 1 2.1559 -0.1720 -2.0837 36 1 1.4520 -1.6704 -1.4024 37 1 6.6949 -2.3091 0.5993 38 1 4.2427 -0.5996 1.0599 39 1 3.6652 -2.2893 1.0400 40 1 0.6192 -2.2944 0.8194 41 1 -0.5123 -3.7517 1.0660 42 1 -1.9465 -5.6895 1.6221 43 1 -1.8362 -6.7304 3.7939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974623049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:54 Heat of formation + Delta-G solvation = 153.214576 kcal Electronic energy + Delta-G solvation = -28639.411815 eV Core-core repulsion = 24724.236334 eV Total energy + Delta-G solvation = -3915.175481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.49873 -40.07138 -38.80172 -37.82619 -34.29950 -33.87291 -33.08846 -32.18996 -30.86521 -30.68402 -28.14946 -26.94147 -25.70811 -25.53246 -24.51999 -23.85423 -22.96861 -21.00800 -20.10524 -19.15309 -18.70016 -17.78105 -17.43066 -17.02617 -16.71447 -16.07469 -15.65125 -14.89465 -14.65713 -14.24419 -14.00716 -13.94116 -13.89967 -13.37206 -13.25549 -13.16423 -12.64463 -12.58122 -12.56833 -12.16130 -12.04033 -11.72904 -11.57623 -11.41792 -11.12649 -11.07454 -11.02016 -10.81377 -10.49451 -10.44400 -10.28804 -10.06086 -9.90667 -9.76062 -9.67643 -8.91944 -8.66548 -8.53352 -6.85406 -5.70556 -3.06160 -0.27405 0.24525 1.40715 1.97627 2.38505 3.07825 3.34411 3.39325 3.40989 3.44145 3.47730 3.75196 4.03324 4.20727 4.48163 4.55720 4.77025 4.86444 5.01904 5.17584 5.20216 5.22169 5.27482 5.33567 5.51116 5.54175 5.60510 5.72861 5.84732 5.95030 6.02220 6.10697 6.11904 6.17514 6.32746 6.51067 6.53831 6.61162 6.62739 6.87973 7.51259 7.60494 7.70656 7.85289 8.23727 8.24180 8.41066 9.20135 9.80963 10.45457 11.39923 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.003689 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.473680 B = 7589.218874 C = 8531.721836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.233 4.233 7 H 0.078 0.922 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.174 3.826 15 C 0.126 3.874 16 H 0.091 0.909 17 N -0.701 5.701 18 C 0.555 3.445 19 O -0.496 6.496 20 C -0.084 4.084 21 C -0.027 4.027 22 C -0.140 4.140 23 C 0.121 3.879 24 N -0.309 5.309 25 N -0.112 5.112 26 N -0.010 5.010 27 N -0.285 5.285 28 C 0.273 3.727 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.014 0.986 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.392 0.608 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.461 -3.572 0.103 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.184 4.184 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.361 4.361 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.563 5.563 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.218 1.218 14 C 0.049 3.951 15 C 0.021 3.979 16 H 0.109 0.891 17 N -0.354 5.354 18 C 0.339 3.661 19 O -0.370 6.370 20 C -0.093 4.093 21 C -0.052 4.052 22 C -0.164 4.164 23 C -0.006 4.006 24 N -0.089 5.089 25 N -0.095 5.095 26 N -0.003 5.003 27 N -0.141 5.141 28 C 0.014 3.986 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.228 0.772 41 H 0.180 0.820 42 H 0.192 0.808 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.158 -3.626 2.353 19.639 hybrid contribution 0.112 -0.689 -1.783 1.915 sum -19.046 -4.315 0.569 19.537 Atomic orbital electron populations 1.21689 0.94755 1.00864 1.01613 1.22026 0.94407 0.96192 0.96443 1.21601 1.02632 0.93547 1.00620 1.21627 0.87834 0.94447 0.94330 1.44446 1.07627 1.79035 1.01799 1.19045 0.89368 1.38777 0.88891 0.90416 1.24813 0.97818 1.01653 0.95911 1.69959 1.24225 1.52990 1.09135 0.86094 0.82618 0.77764 0.79544 1.20559 1.21727 1.21842 1.21543 0.89536 1.00684 0.83338 1.22565 0.92291 0.85688 0.97321 0.89062 1.45863 1.42893 1.33276 1.13320 1.17332 0.82999 0.82490 0.83322 1.90939 1.37309 1.62626 1.46078 1.20522 1.00962 0.99095 0.88759 1.22018 0.90760 0.93536 0.98927 1.21004 1.02172 0.97367 0.95832 1.21742 0.92588 0.99786 0.86469 1.49007 1.26500 1.21426 1.11993 1.82783 1.18358 1.21633 0.86679 1.78059 1.03720 0.97940 1.20586 1.75340 1.22530 1.19539 0.96736 1.23639 0.90265 0.88365 0.96319 0.92681 0.92462 0.93292 0.91095 0.92808 0.93232 0.94023 0.96830 0.93619 0.92587 0.93238 0.77162 0.82012 0.80849 0.80000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.22 37.16 0.31 -1.12 16 2 C -0.09 -1.33 0.83 -152.36 -0.13 -1.46 16 3 C -0.13 -1.87 8.57 37.16 0.32 -1.55 16 4 C 0.14 2.61 6.14 -2.53 -0.02 2.59 16 5 N -0.60 -14.30 3.38 -170.08 -0.57 -14.88 16 6 C -0.23 -6.22 10.28 -15.06 -0.15 -6.37 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 9 N -0.92 -27.06 10.31 55.49 0.57 -26.49 16 10 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.17 4.12 4.79 -3.07 -0.01 4.10 16 15 C 0.13 2.23 2.51 -66.10 -0.17 2.06 16 16 H 0.09 1.70 7.60 -51.93 -0.39 1.31 16 17 N -0.70 -10.39 4.52 -53.14 -0.24 -10.63 16 18 C 0.56 9.25 7.77 -12.57 -0.10 9.16 16 19 O -0.50 -10.69 16.01 5.26 0.08 -10.60 16 20 C -0.08 -1.10 6.06 -102.71 -0.62 -1.72 16 21 C -0.03 -0.20 9.63 -38.74 -0.37 -0.57 16 22 C -0.14 -0.64 9.92 -40.09 -0.40 -1.04 16 23 C 0.12 0.80 11.15 -16.89 -0.19 0.61 16 24 N -0.31 -3.78 3.94 -10.99 -0.04 -3.83 16 25 N -0.11 -1.65 13.99 60.35 0.84 -0.80 16 26 N -0.01 -0.17 13.36 60.35 0.81 0.63 16 27 N -0.28 -5.32 11.75 32.20 0.38 -4.94 16 28 C 0.27 4.18 7.85 -154.52 -1.21 2.97 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.44 6.38 -51.93 -0.33 0.11 16 32 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.01 0.24 7.98 -51.93 -0.41 -0.18 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.06 1.52 7.38 -51.93 -0.38 1.14 16 39 H 0.05 1.36 7.41 -51.93 -0.38 0.97 16 40 H 0.39 4.46 5.01 -40.82 -0.20 4.26 16 41 H 0.16 0.72 6.49 -52.48 -0.34 0.38 16 42 H 0.17 0.03 8.06 -52.49 -0.42 -0.40 16 43 H 0.18 0.48 8.06 -52.48 -0.42 0.06 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -37.06 356.36 -6.03 -43.09 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.36 Total: -1.23 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.84 Total: 7.42 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 1.74 Total: -60.93 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.06 -6.03 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974623049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.307 kcal (2) G-P(sol) polarization free energy of solvation -37.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds