Wall clock time and date at job start Tue Mar 31 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.78405 * 2 1 4 4 C 1.54328 * 110.71963 * 236.75870 * 2 1 3 5 5 N 1.47020 * 107.27319 * 263.83613 * 4 2 1 6 6 C 1.36933 * 125.64739 * 181.09580 * 5 4 2 7 7 H 1.08000 * 120.00409 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99657 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47511 * 60.00266 * 10 8 6 12 12 H 1.48503 * 109.47165 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47377 * 300.00120 * 10 8 6 14 14 C 1.47423 * 108.70217 * 1.05147 * 5 4 2 15 15 C 1.54907 * 104.83481 * 335.87965 * 14 5 4 16 16 H 1.09002 * 111.00447 * 155.07987 * 15 14 5 17 17 N 1.46508 * 111.00222 * 278.89414 * 15 14 5 18 18 C 1.34775 * 119.99912 * 270.41786 * 17 15 14 19 19 O 1.21525 * 119.99778 * 359.97438 * 18 17 15 20 20 C 1.48114 * 120.00143 * 179.97438 * 18 17 15 21 21 C 1.39813 * 119.37598 * 179.72954 * 20 18 17 22 22 C 1.36976 * 119.60963 * 179.70311 * 21 20 18 23 23 C 1.39804 * 118.25003 * 0.57275 * 22 21 20 24 24 N 1.34655 * 135.00661 * 179.71225 * 23 22 21 25 25 N 1.28673 * 109.15872 * 179.97438 * 24 23 22 26 26 N 1.28763 * 111.84806 * 0.02562 * 25 24 23 27 27 H 0.97009 * 125.86000 * 180.02562 * 26 25 24 28 28 C 1.37248 * 108.28630 * 359.97438 * 26 25 24 29 29 N 1.31951 * 134.71287 * 179.97438 * 28 26 25 30 30 H 1.09004 * 109.47225 * 296.76456 * 1 2 3 31 31 H 1.09003 * 109.46992 * 56.75817 * 1 2 3 32 32 H 1.08999 * 109.47522 * 176.76310 * 1 2 3 33 33 H 1.08999 * 109.47257 * 183.24214 * 3 2 1 34 34 H 1.08998 * 109.46694 * 303.23847 * 3 2 1 35 35 H 1.08996 * 109.47026 * 63.23627 * 3 2 1 36 36 H 1.08997 * 109.88302 * 144.41315 * 4 2 1 37 37 H 1.09005 * 110.01202 * 23.32179 * 4 2 1 38 38 H 0.96998 * 119.99257 * 179.97438 * 9 8 6 39 39 H 1.09003 * 110.36873 * 217.03262 * 14 5 4 40 40 H 1.09002 * 110.35997 * 94.71597 * 14 5 4 41 41 H 0.96992 * 119.99926 * 90.41947 * 17 15 14 42 42 H 1.08001 * 120.19704 * 0.02562 * 21 20 18 43 43 H 1.07998 * 120.87227 * 180.23897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 2.3714 -2.1532 -0.7390 6 6 2.8942 -3.1634 -1.5015 7 1 3.1249 -2.9905 -2.5423 8 6 3.1278 -4.4097 -0.9366 9 7 2.8463 -4.6206 0.3318 10 14 3.8404 -5.7879 -1.9768 11 1 5.1678 -5.3772 -2.5008 12 1 3.9923 -7.0084 -1.1446 13 1 2.9270 -6.0742 -3.1122 14 6 2.0125 -2.2509 0.6875 15 6 2.0789 -0.7955 1.2137 16 1 1.4395 -0.6663 2.0870 17 7 3.4594 -0.4086 1.5152 18 6 3.9675 -0.6275 2.7442 19 8 3.2804 -1.1454 3.6023 20 6 5.3633 -0.2369 3.0489 21 6 5.8753 -0.4649 4.3298 22 6 7.1675 -0.1111 4.6150 23 6 7.9294 0.4827 3.6044 24 7 9.1877 0.9533 3.5122 25 7 9.3834 1.4057 2.3236 26 7 8.3370 1.2783 1.5841 27 1 8.2603 1.5508 0.6563 28 6 7.3491 0.6900 2.3335 29 7 6.1012 0.3276 2.1042 30 1 -0.3634 0.4628 0.9176 31 1 -0.3633 0.5634 -0.8595 32 1 -0.3634 -1.0260 -0.0580 33 1 3.1610 1.4061 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7691 1.9343 0.9175 36 1 2.9867 -0.3208 -1.5776 37 1 1.3282 -0.8258 -1.9997 38 1 3.0092 -5.4915 0.7263 39 1 2.7292 -2.8789 1.2169 40 1 1.0038 -2.6488 0.7984 41 1 4.0077 0.0051 0.8304 42 1 5.2573 -0.9220 5.0883 43 1 7.5849 -0.2814 5.5964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974647630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:38 Heat of formation + Delta-G solvation = 124.586884 kcal Electronic energy + Delta-G solvation = -28659.486168 eV Core-core repulsion = 24743.069296 eV Total energy + Delta-G solvation = -3916.416871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.60563 -40.24948 -38.97899 -37.62994 -34.57402 -33.88102 -33.17755 -31.96913 -31.13831 -30.71912 -28.24334 -26.97906 -25.78006 -25.57158 -24.18922 -23.29269 -22.94229 -21.14006 -19.98882 -19.27788 -18.79742 -18.52676 -17.66276 -16.83164 -16.73441 -15.98919 -15.42121 -14.91236 -14.74245 -14.33928 -13.86279 -13.83131 -13.71329 -13.47278 -13.26770 -13.04240 -12.68527 -12.62354 -12.20480 -12.03834 -11.94768 -11.91140 -11.78544 -11.32686 -11.19967 -11.03943 -10.78897 -10.48515 -10.31719 -10.19089 -10.01156 -9.85477 -9.71394 -9.58059 -9.48423 -9.29603 -8.71200 -8.43506 -6.83770 -5.65528 -3.08100 -0.09192 0.75403 1.86630 1.89054 2.78284 3.24271 3.38257 3.42823 3.44558 3.52100 3.68607 4.01014 4.14655 4.46744 4.54636 4.70284 4.93834 5.14573 5.20142 5.22861 5.27170 5.50018 5.50735 5.58916 5.66156 5.75857 5.85588 5.99672 6.03937 6.06731 6.14259 6.23547 6.31791 6.36304 6.46646 6.56368 6.65681 6.69172 6.91796 7.15101 7.44075 7.59386 7.81470 7.84733 7.93106 8.35842 8.47606 9.19899 9.81328 10.45157 11.37354 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.004151 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.236804 B = 6743.030312 C = 7853.269486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.147 3.853 15 C 0.120 3.880 16 H 0.091 0.909 17 N -0.674 5.674 18 C 0.567 3.433 19 O -0.526 6.526 20 C 0.163 3.837 21 C -0.121 4.121 22 C -0.004 4.004 23 C -0.028 4.028 24 N -0.240 5.240 25 N 0.005 4.995 26 N -0.403 5.403 27 H 0.459 0.541 28 C 0.218 3.782 29 N -0.444 5.444 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.023 0.977 41 H 0.407 0.593 42 H 0.168 0.832 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 14.061 5.239 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.021 3.979 15 C 0.014 3.986 16 H 0.109 0.891 17 N -0.324 5.324 18 C 0.350 3.650 19 O -0.401 6.401 20 C 0.009 3.991 21 C -0.144 4.144 22 C -0.035 4.035 23 C -0.156 4.156 24 N -0.117 5.117 25 N 0.022 4.978 26 N -0.134 5.134 27 H 0.307 0.693 28 C -0.026 4.026 29 N -0.161 5.161 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.041 0.959 41 H 0.244 0.756 42 H 0.186 0.814 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.363 14.090 5.120 15.921 hybrid contribution -0.025 -0.894 -1.057 1.385 sum 5.337 13.195 4.063 14.802 Atomic orbital electron populations 1.21687 0.93374 1.02566 1.00953 1.21841 0.96097 0.94562 0.96259 1.21729 1.00519 0.95400 1.01321 1.21414 0.96485 0.86773 0.93656 1.44441 1.74217 1.06684 1.07317 1.18976 1.34278 0.89254 0.92851 0.90648 1.24772 1.01672 0.97583 0.96340 1.69775 1.53558 1.22415 1.10804 0.86206 0.78852 0.81673 0.79041 1.21347 1.21563 1.21206 1.22320 1.00283 0.90150 0.85158 1.22669 0.80747 0.98543 0.96604 0.89124 1.45687 1.14848 1.59856 1.11978 1.17546 0.84336 0.79672 0.83448 1.90810 1.58916 1.43241 1.47173 1.21460 0.94339 0.93751 0.89585 1.21790 0.95512 0.99554 0.97562 1.20505 0.91732 0.92914 0.98323 1.20661 0.93511 1.05597 0.95792 1.75383 1.13951 1.13358 1.09023 1.78079 1.08160 1.13621 0.97940 1.44657 1.07433 1.46181 1.15147 0.69280 1.19807 0.91141 1.01244 0.90409 1.66322 1.03132 1.11757 1.34898 0.92992 0.92659 0.91665 0.92835 0.92674 0.92800 0.96108 0.95768 0.93608 0.86887 0.95868 0.75641 0.81430 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.41 37.15 0.31 -1.53 16 2 C -0.09 -1.38 0.80 -152.67 -0.12 -1.50 16 3 C -0.13 -1.69 8.07 37.16 0.30 -1.39 16 4 C 0.14 2.78 6.41 -3.06 -0.02 2.76 16 5 N -0.60 -14.65 3.39 -170.07 -0.58 -15.22 16 6 C -0.23 -6.12 10.27 -15.06 -0.15 -6.27 16 7 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 10 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 14 C 0.15 3.47 5.27 -2.53 -0.01 3.46 16 15 C 0.12 2.20 2.61 -65.78 -0.17 2.03 16 16 H 0.09 1.66 7.53 -51.93 -0.39 1.27 16 17 N -0.67 -11.65 4.61 -52.58 -0.24 -11.89 16 18 C 0.57 9.84 7.81 -12.21 -0.10 9.74 16 19 O -0.53 -10.31 15.98 5.34 0.09 -10.22 16 20 C 0.16 2.39 6.74 -82.94 -0.56 1.83 16 21 C -0.12 -1.44 9.55 -39.45 -0.38 -1.81 16 22 C 0.00 -0.04 10.16 -39.45 -0.40 -0.44 16 23 C -0.03 -0.36 7.38 -84.90 -0.63 -0.98 16 24 N -0.24 -3.14 12.43 32.12 0.40 -2.74 16 25 N 0.01 0.06 13.28 60.35 0.80 0.86 16 26 N -0.40 -4.19 7.06 31.13 0.22 -3.97 16 27 H 0.46 3.12 8.96 -190.25 -1.71 1.42 16 28 C 0.22 2.82 8.56 -156.28 -1.34 1.48 16 29 N -0.44 -6.26 9.54 -8.91 -0.08 -6.35 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.07 7.57 -51.93 -0.39 0.67 16 33 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.40 7.76 -51.93 -0.40 0.00 16 37 H 0.02 0.48 7.85 -51.93 -0.41 0.07 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 39 H 0.11 3.13 5.87 -51.93 -0.30 2.83 16 40 H 0.02 0.59 7.80 -51.93 -0.41 0.19 16 41 H 0.41 6.69 6.34 -40.82 -0.26 6.43 16 42 H 0.17 1.76 7.61 -52.49 -0.40 1.37 16 43 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -32.51 355.28 -8.53 -41.04 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.66 Total: 5.17 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -3.36 Total: 7.06 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: 1.08 Total: -65.40 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.51 -8.53 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974647630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.626 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds