Wall clock time and date at job start Tue Mar 31 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.88493 * 2 1 4 4 C 1.54909 * 111.00623 * 123.87989 * 2 1 3 5 5 N 1.47429 * 104.83054 * 81.06511 * 4 2 1 6 6 C 1.36939 * 125.64625 * 203.86538 * 5 4 2 7 7 H 1.07997 * 119.99591 * 354.66315 * 6 5 4 8 8 C 1.38813 * 119.99732 * 174.66899 * 6 5 4 9 9 N 1.31615 * 120.00275 * 7.02877 * 8 6 5 10 10 Si 1.86799 * 119.99623 * 187.02776 * 8 6 5 11 11 H 1.48500 * 109.47076 * 94.98809 * 10 8 6 12 12 H 1.48498 * 109.46809 * 214.98525 * 10 8 6 13 13 H 1.48499 * 109.47087 * 334.98434 * 10 8 6 14 14 C 1.47020 * 108.70230 * 24.13111 * 5 4 2 15 15 C 1.54322 * 107.27467 * 358.93934 * 14 5 4 16 16 H 1.09001 * 110.87739 * 219.37667 * 15 14 5 17 17 N 1.46498 * 110.72280 * 96.16757 * 15 14 5 18 18 C 1.34775 * 119.99928 * 91.47514 * 17 15 14 19 19 O 1.21526 * 119.99986 * 0.02562 * 18 17 15 20 20 C 1.48114 * 120.00191 * 179.97438 * 18 17 15 21 21 C 1.39826 * 119.37535 * 179.72835 * 20 18 17 22 22 C 1.36968 * 119.60531 * 179.73156 * 21 20 18 23 23 C 1.39810 * 118.25339 * 0.56932 * 22 21 20 24 24 N 1.34652 * 135.00553 * 179.72606 * 23 22 21 25 25 N 1.28673 * 109.16465 * 179.97438 * 24 23 22 26 26 N 1.28771 * 111.83800 * 0.02562 * 25 24 23 27 27 H 0.97004 * 125.85271 * 179.97438 * 26 25 24 28 28 C 1.37247 * 108.28583 * 359.97438 * 26 25 24 29 29 N 1.31954 * 134.70488 * 180.02562 * 28 26 25 30 30 H 1.08999 * 109.47283 * 297.57308 * 1 2 3 31 31 H 1.09000 * 109.47140 * 57.57348 * 1 2 3 32 32 H 1.09002 * 109.46590 * 177.56779 * 1 2 3 33 33 H 1.08995 * 109.47047 * 182.42512 * 3 2 1 34 34 H 1.09001 * 109.47244 * 302.42895 * 3 2 1 35 35 H 1.09004 * 109.47266 * 62.42533 * 3 2 1 36 36 H 1.09002 * 110.36770 * 322.23109 * 4 2 1 37 37 H 1.08994 * 110.36740 * 199.90292 * 4 2 1 38 38 H 0.96992 * 120.00186 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.88144 * 118.35838 * 14 5 4 40 40 H 1.09003 * 109.87966 * 239.52320 * 14 5 4 41 41 H 0.97002 * 120.00381 * 271.48711 * 17 15 14 42 42 H 1.08001 * 120.19141 * 0.02562 * 21 20 18 43 43 H 1.08006 * 120.87317 * 180.26463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0140 -2.2156 0.7741 6 6 1.9506 -3.2996 1.6084 7 1 2.0370 -3.1647 2.6765 8 6 1.7753 -4.5718 1.0813 9 7 1.8087 -4.7546 -0.2216 10 14 1.4923 -6.0242 2.2214 11 1 0.0339 -6.2665 2.3617 12 1 2.1425 -7.2327 1.6542 13 1 2.0754 -5.7280 3.5546 14 6 2.0286 -2.2649 -0.6952 15 6 2.0862 -0.8084 -1.2020 16 1 1.4541 -0.6774 -2.0803 17 7 3.4667 -0.4160 -1.4960 18 6 3.9656 -0.5850 -2.7366 19 8 3.2701 -1.0624 -3.6114 20 6 5.3611 -0.1878 -3.0341 21 6 5.8671 -0.3743 -4.3242 22 6 7.1552 -0.0036 -4.6060 23 6 7.9270 0.5426 -3.5761 24 7 9.1881 1.0031 -3.4727 25 7 9.3940 1.4038 -2.2675 26 7 8.3522 1.2492 -1.5267 27 1 8.2830 1.4823 -0.5876 28 6 7.3564 0.6980 -2.2937 29 7 6.1085 0.3315 -2.0711 30 1 -0.3634 0.4757 0.9109 31 1 -0.3633 0.5511 -0.8674 32 1 -0.3632 -1.0268 -0.0436 33 1 3.1642 1.4029 -0.0435 34 1 1.6901 1.9654 -0.8674 35 1 1.7605 1.9386 0.9110 36 1 1.4673 -0.6454 2.0839 37 1 3.1182 -0.5228 1.4026 38 1 1.6859 -5.6435 -0.5899 39 1 2.9065 -2.8120 -1.0390 40 1 1.1219 -2.7483 -1.0589 41 1 4.0219 -0.0348 -0.7979 42 1 5.2443 -0.8036 -5.0951 43 1 7.5655 -0.1344 -5.5965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974647637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:41 Heat of formation + Delta-G solvation = 124.418407 kcal Electronic energy + Delta-G solvation = -28418.855384 eV Core-core repulsion = 24502.431207 eV Total energy + Delta-G solvation = -3916.424177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.68347 -40.34866 -39.02955 -37.69432 -34.65517 -33.94580 -33.15194 -32.04871 -31.22240 -30.72332 -28.22864 -26.95008 -25.83179 -25.61985 -24.26556 -23.34215 -23.01534 -21.15099 -20.06563 -19.34984 -18.86384 -18.59490 -17.75727 -16.90855 -16.71265 -15.97070 -15.48791 -15.00796 -14.77668 -14.39920 -13.94268 -13.84411 -13.79683 -13.52706 -13.35542 -13.08560 -12.69456 -12.52049 -12.11871 -12.10395 -12.02430 -11.98765 -11.69282 -11.40987 -11.10905 -11.03637 -10.80434 -10.49306 -10.33891 -10.25765 -10.05186 -9.91211 -9.72049 -9.64753 -9.56589 -9.38000 -8.64467 -8.52722 -6.84730 -5.72783 -3.06129 -0.17771 0.67237 1.79074 1.80729 2.68889 3.14557 3.39182 3.43891 3.44531 3.46742 3.57597 3.92696 4.06483 4.46502 4.48333 4.61550 4.90859 5.06891 5.13858 5.25225 5.27284 5.43262 5.51665 5.56366 5.61440 5.77590 5.88886 5.96082 5.99691 6.13251 6.15000 6.21166 6.25428 6.35261 6.54091 6.58081 6.62702 6.65583 6.89989 7.06053 7.53529 7.56314 7.74910 7.78024 7.84160 8.22889 8.36363 9.19617 9.80506 10.46084 11.38539 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.003402 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.440637 B = 8227.361613 C = 8826.373097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.174 3.826 15 C 0.120 3.880 16 H 0.094 0.906 17 N -0.683 5.683 18 C 0.566 3.434 19 O -0.523 6.523 20 C 0.161 3.839 21 C -0.120 4.120 22 C -0.003 4.003 23 C -0.027 4.027 24 N -0.240 5.240 25 N 0.007 4.993 26 N -0.402 5.402 27 H 0.459 0.541 28 C 0.218 3.782 29 N -0.446 5.446 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.406 0.594 42 H 0.169 0.831 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.769 14.694 -5.331 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.201 4.201 9 N -0.564 5.564 10 Si 0.739 3.261 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.015 3.985 16 H 0.112 0.888 17 N -0.333 5.333 18 C 0.349 3.651 19 O -0.398 6.398 20 C 0.006 3.994 21 C -0.144 4.144 22 C -0.034 4.034 23 C -0.154 4.154 24 N -0.117 5.117 25 N 0.024 4.976 26 N -0.134 5.134 27 H 0.308 0.692 28 C -0.027 4.027 29 N -0.162 5.162 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.243 0.757 42 H 0.186 0.814 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.395 14.699 -5.210 17.711 hybrid contribution -0.430 -0.993 0.988 1.466 sum 7.964 13.707 -4.222 16.405 Atomic orbital electron populations 1.21595 0.93123 1.02922 1.00640 1.22018 0.96449 0.94119 0.96449 1.21692 1.00395 0.95544 1.01378 1.21641 0.96563 0.85724 0.94388 1.44431 1.87031 0.99686 1.01734 1.19021 1.43178 0.84598 0.89134 0.90470 1.24812 1.01946 0.97435 0.95941 1.69955 1.55587 1.21337 1.09472 0.86153 0.77889 0.82419 0.79621 1.21590 1.21829 1.20734 1.21547 1.01748 0.88232 0.83580 1.22633 0.80489 0.97827 0.97542 0.88822 1.45922 1.14974 1.61649 1.10742 1.17592 0.84438 0.79480 0.83595 1.90826 1.58375 1.44261 1.46344 1.21457 0.94206 0.94191 0.89499 1.21798 0.95632 0.99374 0.97608 1.20521 0.91671 0.92846 0.98354 1.20665 0.93506 1.05776 0.95495 1.75395 1.13707 1.13988 1.08582 1.78097 1.08394 1.13319 0.97839 1.44670 1.07332 1.47226 1.14176 0.69245 1.19799 0.91043 1.01770 0.90064 1.66314 1.02894 1.11739 1.35270 0.92767 0.93328 0.91178 0.92950 0.92849 0.92606 0.93947 0.96765 0.93658 0.93573 0.92324 0.75677 0.81380 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.61 37.16 0.32 -1.59 16 2 C -0.09 -1.42 0.83 -152.35 -0.13 -1.55 16 3 C -0.13 -1.67 8.35 37.16 0.31 -1.36 16 4 C 0.14 2.75 6.12 -2.53 -0.02 2.74 16 5 N -0.60 -14.64 3.38 -170.07 -0.58 -15.22 16 6 C -0.23 -6.27 10.26 -15.06 -0.15 -6.43 16 7 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 8 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 9 N -0.92 -26.75 10.36 55.49 0.57 -26.17 16 10 Si 0.91 21.91 29.56 -169.99 -5.02 16.89 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.17 4.13 4.74 -3.07 -0.01 4.12 16 15 C 0.12 2.18 2.59 -66.09 -0.17 2.01 16 16 H 0.09 1.73 7.45 -51.93 -0.39 1.34 16 17 N -0.68 -11.15 4.40 -52.88 -0.23 -11.38 16 18 C 0.57 9.25 7.81 -12.21 -0.10 9.16 16 19 O -0.52 -9.85 15.93 5.34 0.09 -9.77 16 20 C 0.16 2.18 6.74 -82.93 -0.56 1.62 16 21 C -0.12 -1.32 9.55 -39.45 -0.38 -1.70 16 22 C 0.00 -0.03 10.16 -39.45 -0.40 -0.43 16 23 C -0.03 -0.32 7.38 -84.91 -0.63 -0.95 16 24 N -0.24 -2.95 12.43 32.12 0.40 -2.55 16 25 N 0.01 0.07 13.28 60.35 0.80 0.88 16 26 N -0.40 -3.81 7.06 31.13 0.22 -3.59 16 27 H 0.46 2.68 8.96 -190.25 -1.71 0.98 16 28 C 0.22 2.59 8.56 -156.29 -1.34 1.25 16 29 N -0.45 -5.77 9.54 -8.91 -0.08 -5.86 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.27 7.81 -51.93 -0.41 0.86 16 33 H 0.05 0.64 6.27 -51.93 -0.33 0.31 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.01 0.28 8.04 -51.93 -0.42 -0.14 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 40 H 0.06 1.57 7.29 -51.93 -0.38 1.19 16 41 H 0.41 6.16 6.36 -40.82 -0.26 5.90 16 42 H 0.17 1.62 7.61 -52.49 -0.40 1.22 16 43 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -32.68 356.59 -8.56 -41.24 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.75 Total: 3.48 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -3.34 Total: 6.68 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: 1.10 Total: -63.89 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.68 -8.56 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974647637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.654 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds