Wall clock time and date at job start Tue Mar 31 2020 05:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 110.91857 * 2 1 4 4 C 1.54908 * 111.00553 * 236.09616 * 2 1 3 5 5 N 1.47425 * 104.82954 * 278.93909 * 4 2 1 6 6 C 1.36945 * 125.64716 * 155.90912 * 5 4 2 7 7 H 1.07999 * 119.99908 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99707 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00094 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99672 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46773 * 90.00176 * 10 8 6 12 12 H 1.48495 * 109.47454 * 210.00141 * 10 8 6 13 13 H 1.48502 * 109.47446 * 330.00336 * 10 8 6 14 14 C 1.47026 * 108.70497 * 335.86703 * 5 4 2 15 15 C 1.54317 * 107.27118 * 1.06133 * 14 5 4 16 16 H 1.09000 * 110.87166 * 140.62046 * 15 14 5 17 17 N 1.46492 * 110.72553 * 263.82855 * 15 14 5 18 18 C 1.34782 * 120.00204 * 268.52517 * 17 15 14 19 19 O 1.21566 * 119.99441 * 359.97438 * 18 17 15 20 20 C 1.47722 * 120.00194 * 179.97438 * 18 17 15 21 21 C 1.40111 * 120.34994 * 0.02562 * 20 18 17 22 22 N 1.31264 * 121.14672 * 179.97438 * 21 20 18 23 23 C 1.32719 * 121.80256 * 0.02562 * 22 21 20 24 24 N 1.37110 * 133.40513 * 179.97438 * 23 22 21 25 25 H 0.97000 * 126.59421 * 0.02562 * 24 23 22 26 26 N 1.40192 * 106.81699 * 180.02562 * 24 23 22 27 27 N 1.28659 * 109.51002 * 0.02562 * 26 24 23 28 28 C 1.35325 * 110.00213 * 0.02562 * 27 26 24 29 29 C 1.39427 * 120.34837 * 179.97438 * 20 18 17 30 30 H 1.08999 * 109.46986 * 296.10246 * 1 2 3 31 31 H 1.08999 * 109.46732 * 56.09643 * 1 2 3 32 32 H 1.08995 * 109.47461 * 176.09965 * 1 2 3 33 33 H 1.08999 * 109.46757 * 183.89648 * 3 2 1 34 34 H 1.08992 * 109.46514 * 303.90142 * 3 2 1 35 35 H 1.09003 * 109.46790 * 63.89711 * 3 2 1 36 36 H 1.08995 * 110.36505 * 37.77499 * 4 2 1 37 37 H 1.09004 * 110.36808 * 160.10150 * 4 2 1 38 38 H 0.97006 * 119.99624 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.88138 * 241.64195 * 14 5 4 40 40 H 1.09003 * 109.87955 * 120.48221 * 14 5 4 41 41 H 0.97008 * 120.00118 * 88.51878 * 17 15 14 42 42 H 1.08002 * 119.43105 * 359.97438 * 21 20 18 43 43 H 1.07999 * 120.95230 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 2.0138 -2.2159 -0.7732 6 6 1.9460 -3.3001 -1.6071 7 1 1.9414 -3.1584 -2.6777 8 6 1.8831 -4.5811 -1.0761 9 7 1.8882 -4.7537 0.2287 10 14 1.7898 -6.0599 -2.2136 11 1 3.1631 -6.5272 -2.5314 12 1 1.0377 -7.1520 -1.5451 13 1 1.0947 -5.6762 -3.4685 14 6 2.0285 -2.2646 0.6962 15 6 2.0862 -0.8080 1.2023 16 1 1.4540 -0.6767 2.0806 17 7 3.4666 -0.4156 1.4963 18 6 3.9654 -0.5840 2.7371 19 8 3.2696 -1.0612 3.6122 20 6 5.3576 -0.1889 3.0334 21 6 6.1659 0.3622 2.0303 22 7 7.4048 0.7192 2.2764 23 6 7.9483 0.5760 3.4788 24 7 9.1876 0.8594 3.9924 25 1 9.9370 1.2471 3.5139 26 7 9.1635 0.4810 5.3420 27 7 8.0049 0.0038 5.6339 28 6 7.2056 0.0286 4.5421 29 6 5.8809 -0.3594 4.3144 30 1 -0.3633 0.4521 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3634 -1.0252 -0.0699 33 1 3.1637 1.4025 -0.0698 34 1 1.6706 1.9731 -0.8529 35 1 1.7836 1.9300 0.9229 36 1 1.4673 -0.6462 -2.0836 37 1 3.1183 -0.5234 -1.4023 38 1 1.8439 -5.6489 0.5996 39 1 2.9062 -2.8117 1.0402 40 1 1.1218 -2.7480 1.0601 41 1 4.0218 -0.0346 0.7980 42 1 5.7626 0.4956 1.0373 43 1 5.2814 -0.7812 5.1077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974674476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:33 Heat of formation + Delta-G solvation = 121.329215 kcal Electronic energy + Delta-G solvation = -28251.070986 eV Core-core repulsion = 24334.512852 eV Total energy + Delta-G solvation = -3916.558134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.68175 -40.20687 -38.83801 -37.73126 -34.30354 -34.01344 -33.20043 -31.99497 -30.99126 -30.69925 -28.15120 -26.91078 -25.67821 -25.19676 -24.66173 -23.23754 -22.98841 -21.05674 -20.14352 -19.12573 -19.00048 -18.37063 -17.09472 -16.80009 -16.62365 -16.43083 -15.60066 -14.91866 -14.55558 -14.31114 -14.02536 -13.89210 -13.83049 -13.50931 -13.38392 -13.20536 -12.87623 -12.61885 -12.27552 -12.14846 -12.02162 -11.81213 -11.71567 -11.41637 -11.12117 -11.02529 -10.79712 -10.48142 -10.34767 -10.23082 -10.07455 -9.91431 -9.67888 -9.66767 -9.65206 -9.35856 -8.67671 -8.55673 -6.85816 -5.71742 -3.06532 -0.12228 0.36146 1.65700 1.73640 2.71808 3.11399 3.39116 3.44242 3.46634 3.53411 3.56913 3.91780 3.95658 4.32904 4.39497 4.48270 4.77410 4.88999 5.01158 5.22036 5.24886 5.39754 5.50937 5.53653 5.59529 5.75002 5.80490 5.87650 5.96697 6.12247 6.14487 6.18387 6.30516 6.33642 6.51483 6.55443 6.61368 6.63758 6.88831 7.12281 7.41826 7.50382 7.58093 7.70657 7.82958 8.22766 8.36989 9.19610 9.80341 10.44913 11.38899 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.003267 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.176143 B = 8569.054906 C = 9539.665859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.174 3.826 15 C 0.123 3.877 16 H 0.093 0.907 17 N -0.701 5.701 18 C 0.566 3.434 19 O -0.528 6.528 20 C -0.197 4.197 21 C 0.216 3.784 22 N -0.489 5.489 23 C 0.292 3.708 24 N -0.484 5.484 25 H 0.453 0.547 26 N 0.015 4.985 27 N -0.190 5.190 28 C -0.074 4.074 29 C 0.082 3.918 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.394 0.606 42 H 0.179 0.821 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.445 15.385 3.906 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.111 0.889 17 N -0.351 5.351 18 C 0.351 3.649 19 O -0.405 6.405 20 C -0.206 4.206 21 C 0.042 3.958 22 N -0.203 5.203 23 C 0.047 3.953 24 N -0.210 5.210 25 H 0.301 0.699 26 N 0.032 4.968 27 N -0.072 5.072 28 C -0.199 4.199 29 C 0.051 3.949 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.230 0.770 42 H 0.195 0.805 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.259 15.045 5.291 18.441 hybrid contribution -0.063 -0.760 -1.584 1.758 sum 9.196 14.284 3.707 17.388 Atomic orbital electron populations 1.21599 0.93171 1.03024 1.00594 1.22036 0.96482 0.94115 0.96501 1.21686 1.00105 0.95602 1.01522 1.21646 0.96558 0.85767 0.94398 1.44435 1.86976 0.99703 1.01770 1.19010 1.44039 0.83941 0.88891 0.90476 1.24799 1.02138 0.97371 0.95944 1.69948 1.56557 1.20861 1.09133 0.86154 0.77503 0.82744 0.79532 1.21711 1.21703 1.20740 1.21545 1.01823 0.88320 0.83453 1.22581 0.80373 0.97716 0.97424 0.88854 1.45902 1.15253 1.63555 1.10417 1.17586 0.85220 0.78912 0.83178 1.90817 1.59606 1.44073 1.46052 1.20904 0.97342 1.07399 0.94969 1.23107 0.86371 0.87363 0.98939 1.66695 1.13517 1.21784 1.18317 1.19589 0.87703 0.96268 0.91714 1.47508 1.11258 1.52444 1.09769 0.69852 1.81724 1.13739 1.11070 0.90256 1.74885 0.97673 1.11370 1.23241 1.20401 0.97530 1.10635 0.91375 1.21110 0.89866 0.87279 0.96609 0.93274 0.92845 0.91134 0.93171 0.92546 0.92745 0.94007 0.96704 0.93665 0.93265 0.92613 0.76987 0.80451 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.57 37.16 0.32 -1.54 16 2 C -0.09 -1.34 0.83 -152.35 -0.13 -1.47 16 3 C -0.13 -1.47 8.22 37.16 0.31 -1.17 16 4 C 0.14 2.59 6.12 -2.53 -0.02 2.57 16 5 N -0.60 -14.14 3.38 -170.07 -0.57 -14.72 16 6 C -0.23 -6.12 10.28 -15.05 -0.15 -6.27 16 7 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -26.51 10.31 55.49 0.57 -25.94 16 10 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.17 4.00 4.79 -3.07 -0.01 3.98 16 15 C 0.12 2.12 2.59 -66.10 -0.17 1.95 16 16 H 0.09 1.67 7.45 -51.93 -0.39 1.29 16 17 N -0.70 -10.11 4.41 -53.01 -0.23 -10.34 16 18 C 0.57 8.57 7.77 -12.38 -0.10 8.47 16 19 O -0.53 -9.94 16.04 5.31 0.09 -9.86 16 20 C -0.20 -2.41 5.88 -104.88 -0.62 -3.02 16 21 C 0.22 2.22 10.69 -17.09 -0.18 2.04 16 22 N -0.49 -5.39 10.37 -12.03 -0.12 -5.51 16 23 C 0.29 3.31 8.49 -155.93 -1.32 1.99 16 24 N -0.48 -4.46 7.52 31.15 0.23 -4.23 16 25 H 0.45 2.50 8.96 -182.53 -1.64 0.86 16 26 N 0.02 0.17 13.82 60.35 0.83 1.00 16 27 N -0.19 -2.43 12.40 32.17 0.40 -2.03 16 28 C -0.07 -0.92 7.27 -84.74 -0.62 -1.53 16 29 C 0.08 1.00 9.75 -38.51 -0.38 0.63 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 33 H 0.05 0.49 6.48 -51.93 -0.34 0.15 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.02 0.26 7.98 -51.93 -0.41 -0.15 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.05 1.31 7.41 -51.93 -0.38 0.92 16 40 H 0.06 1.47 7.38 -51.93 -0.38 1.09 16 41 H 0.39 4.65 5.15 -40.82 -0.21 4.44 16 42 H 0.18 1.34 6.39 -52.49 -0.34 1.00 16 43 H 0.17 1.95 7.71 -52.49 -0.40 1.55 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -32.74 355.47 -8.20 -40.94 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.56 Total: 2.23 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.17 Total: 6.39 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 1.11 Total: -61.76 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.74 -8.20 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974674476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.273 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds