Wall clock time and date at job start Tue Mar 31 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.36936 * 125.64899 * 178.89496 * 5 4 2 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47090 * 90.00295 * 10 8 6 12 12 H 1.48500 * 109.46944 * 210.00181 * 10 8 6 13 13 H 1.48498 * 109.47226 * 330.00384 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00165 * 204.88167 * 15 14 5 17 17 N 1.46495 * 111.00127 * 81.07022 * 15 14 5 18 18 C 1.34779 * 120.00474 * 86.45568 * 17 15 14 19 19 O 1.21541 * 119.99712 * 359.97438 * 18 17 15 20 20 C 1.47878 * 120.00148 * 179.97438 * 18 17 15 21 21 C 1.39454 * 121.11417 * 359.70868 * 20 18 17 22 22 C 1.38614 * 119.37083 * 179.77789 * 21 20 18 23 23 N 1.31585 * 121.64131 * 0.51678 * 22 21 20 24 24 C 1.32206 * 121.86160 * 359.74673 * 23 22 21 25 25 N 1.37208 * 134.67232 * 179.97438 * 24 23 22 26 26 H 0.97004 * 125.87051 * 359.97068 * 25 24 23 27 27 N 1.28778 * 108.26578 * 179.97438 * 25 24 23 28 28 N 1.28693 * 111.75499 * 359.97438 * 27 25 24 29 29 C 1.34384 * 109.15375 * 0.02562 * 28 27 25 30 30 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 31 31 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 32 32 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 33 33 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 34 34 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 35 35 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 36 36 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 37 37 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 38 38 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 39 39 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 40 40 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 41 41 H 0.97004 * 120.00040 * 266.44542 * 17 15 14 42 42 H 1.08003 * 120.31086 * 0.02562 * 21 20 18 43 43 H 1.08004 * 119.17686 * 180.28350 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8980 -3.1616 1.5062 7 1 3.1271 -2.9866 2.5470 8 6 3.1334 -4.4087 0.9438 9 7 2.8538 -4.6221 -0.3245 10 14 3.8471 -5.7841 1.9871 11 1 2.7428 -6.5519 2.6166 12 1 4.6529 -6.6892 1.1289 13 1 4.7129 -5.2045 3.0453 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 1.4401 -0.6739 -2.0878 17 7 3.4589 -0.4107 -1.5152 18 6 3.9889 -0.6875 -2.7231 19 8 3.3221 -1.2607 -3.5622 20 6 5.3815 -0.2940 -3.0274 21 6 6.1652 0.3698 -2.0841 22 6 7.4678 0.7178 -2.4061 23 7 7.9832 0.4463 -3.5860 24 6 7.2898 -0.1758 -4.5240 25 7 7.5518 -0.5810 -5.8085 26 1 8.3883 -0.4578 -6.2839 27 7 6.4962 -1.1529 -6.2745 28 7 5.5418 -1.1687 -5.4114 29 6 5.9591 -0.5728 -4.2815 30 1 -0.3633 0.4858 0.9056 31 1 -0.3633 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4056 -0.0320 34 1 1.6957 1.9622 -0.8735 35 1 1.7476 1.9425 0.9056 36 1 1.3264 -0.8256 1.9977 37 1 2.9854 -0.3193 1.5792 38 1 3.0186 -5.4934 -0.7176 39 1 2.7337 -2.8821 -1.2130 40 1 1.0085 -2.6566 -0.7952 41 1 3.9912 0.0466 -0.8454 42 1 5.7624 0.6069 -1.1104 43 1 8.0735 1.2277 -1.6715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974798539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:03 Heat of formation + Delta-G solvation = 130.476958 kcal Electronic energy + Delta-G solvation = -28848.979809 eV Core-core repulsion = 24932.818350 eV Total energy + Delta-G solvation = -3916.161458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.50128 -40.03517 -38.98939 -37.76167 -34.25399 -33.91256 -33.24235 -31.86510 -30.92504 -30.71033 -28.20511 -26.94780 -25.68404 -25.49857 -23.99948 -23.72379 -22.81843 -21.11817 -20.03994 -19.22615 -18.73214 -18.21565 -17.44782 -16.71964 -16.69809 -16.00712 -15.43249 -15.00993 -14.74165 -14.33731 -14.00297 -13.88586 -13.72521 -13.38790 -13.19875 -13.09541 -12.63845 -12.41276 -12.23080 -11.96256 -11.80384 -11.73803 -11.58692 -11.31760 -11.19100 -11.01362 -10.79177 -10.43368 -10.23795 -10.11902 -9.97169 -9.82111 -9.69783 -9.43889 -9.42488 -9.19460 -8.68804 -8.40378 -6.81801 -5.62637 -3.06168 -0.04569 0.71697 1.99657 2.11700 2.93669 3.24697 3.39769 3.44220 3.47481 3.65084 3.73214 4.10450 4.30726 4.45825 4.48552 4.63029 4.92760 5.00915 5.20431 5.24845 5.32285 5.37499 5.51890 5.58602 5.61975 5.75432 5.84330 5.99752 6.00250 6.08306 6.14900 6.22014 6.38353 6.43394 6.47388 6.57965 6.66924 6.69320 6.93759 7.29579 7.48081 7.61984 7.82332 7.94761 8.06825 8.39631 8.56913 9.21963 9.83718 10.47379 11.39761 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.004313 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.342715 B = 6490.230896 C = 7692.423320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.915 5.915 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.145 3.855 15 C 0.125 3.875 16 H 0.088 0.912 17 N -0.692 5.692 18 C 0.548 3.452 19 O -0.500 6.500 20 C 0.005 3.995 21 C -0.145 4.145 22 C 0.163 3.837 23 N -0.465 5.465 24 C 0.213 3.787 25 N -0.409 5.409 26 H 0.456 0.544 27 N -0.003 5.003 28 N -0.203 5.203 29 C 0.003 3.997 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.022 0.978 41 H 0.395 0.605 42 H 0.157 0.843 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 15.818 -3.826 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.020 3.980 15 C 0.020 3.980 16 H 0.106 0.894 17 N -0.344 5.344 18 C 0.332 3.668 19 O -0.374 6.374 20 C -0.011 4.011 21 C -0.169 4.169 22 C -0.009 4.009 23 N -0.179 5.179 24 C -0.030 4.030 25 N -0.139 5.139 26 H 0.304 0.696 27 N 0.014 4.986 28 N -0.079 5.079 29 C -0.126 4.126 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.040 0.960 41 H 0.231 0.769 42 H 0.175 0.825 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.305 14.627 -5.924 17.390 hybrid contribution 0.917 -0.289 1.716 1.967 sum 8.222 14.337 -4.208 17.055 Atomic orbital electron populations 1.21687 0.93413 1.02567 1.00957 1.21887 0.96143 0.94490 0.96284 1.21725 1.00207 0.95473 1.01502 1.21399 0.96443 0.86842 0.93603 1.44456 1.74171 1.06716 1.07335 1.19004 1.34397 0.89317 0.92829 0.90563 1.24794 1.01665 0.97609 0.96293 1.69793 1.53372 1.22302 1.10801 0.86142 0.78595 0.82190 0.78946 1.21618 1.21755 1.20759 1.22321 1.00336 0.90309 0.85048 1.22625 0.80587 0.98361 0.96442 0.89365 1.45708 1.15320 1.59445 1.13902 1.17738 0.85300 0.80624 0.83160 1.90869 1.60534 1.39105 1.46860 1.19871 0.95512 0.95375 0.90345 1.22414 0.95308 0.98828 1.00328 1.22806 0.92669 0.94271 0.91163 1.66309 1.37401 1.13323 1.00850 1.19865 0.92378 1.01821 0.88975 1.44669 1.15517 1.44182 1.09516 0.69646 1.78263 0.89637 1.09674 1.21049 1.75599 1.18446 1.15580 0.98235 1.20128 0.93353 1.03356 0.95764 0.92615 0.93032 0.91698 0.93068 0.92688 0.92541 0.95849 0.96109 0.93605 0.86808 0.95979 0.76925 0.82512 0.80140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.44 37.16 0.31 -1.54 16 2 C -0.09 -1.35 0.81 -152.54 -0.12 -1.47 16 3 C -0.13 -1.55 8.17 37.15 0.30 -1.24 16 4 C 0.14 2.71 6.40 -3.07 -0.02 2.69 16 5 N -0.60 -14.52 3.39 -170.07 -0.58 -15.09 16 6 C -0.23 -6.12 10.27 -15.06 -0.15 -6.28 16 7 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.91 -27.07 10.09 55.49 0.56 -26.51 16 10 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 C 0.15 3.50 5.27 -2.53 -0.01 3.48 16 15 C 0.12 2.31 2.57 -65.65 -0.17 2.15 16 16 H 0.09 1.68 7.63 -51.93 -0.40 1.28 16 17 N -0.69 -11.52 4.64 -52.53 -0.24 -11.76 16 18 C 0.55 10.12 7.79 -12.31 -0.10 10.02 16 19 O -0.50 -11.32 16.02 5.33 0.09 -11.23 16 20 C 0.01 0.08 5.92 -104.50 -0.62 -0.54 16 21 C -0.15 -1.54 9.61 -38.99 -0.37 -1.91 16 22 C 0.16 1.48 11.14 -17.52 -0.20 1.28 16 23 N -0.46 -5.31 10.35 -12.39 -0.13 -5.44 16 24 C 0.21 2.83 8.56 -156.21 -1.34 1.50 16 25 N -0.41 -4.61 7.06 31.11 0.22 -4.39 16 26 H 0.46 3.02 8.96 -190.25 -1.71 1.32 16 27 N 0.00 -0.05 13.29 60.35 0.80 0.75 16 28 N -0.20 -3.66 11.92 32.23 0.38 -3.27 16 29 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.07 7.46 -51.93 -0.39 0.69 16 33 H 0.05 0.55 6.21 -51.93 -0.32 0.22 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.45 7.84 -51.93 -0.41 0.05 16 37 H 0.02 0.38 7.82 -51.93 -0.41 -0.03 16 38 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.11 3.24 5.87 -51.93 -0.31 2.93 16 40 H 0.02 0.58 7.73 -51.93 -0.40 0.18 16 41 H 0.39 5.46 4.96 -40.82 -0.20 5.26 16 42 H 0.16 1.21 6.53 -52.48 -0.34 0.87 16 43 H 0.18 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -35.92 352.84 -8.31 -44.23 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.54 Total: 3.07 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -3.17 Total: 7.30 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: 1.02 Total: -65.71 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.92 -8.31 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974798539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.710 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds