Wall clock time and date at job start Tue Mar 31 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.78089 * 2 1 4 4 C 1.54330 * 110.71695 * 236.76394 * 2 1 3 5 5 N 1.47020 * 107.26873 * 219.44297 * 4 2 1 6 6 C 1.36940 * 125.64309 * 178.98682 * 5 4 2 7 7 H 1.07993 * 120.00318 * 349.94445 * 6 5 4 8 8 C 1.38816 * 119.99626 * 169.94312 * 6 5 4 9 9 N 1.31616 * 120.00466 * 350.41734 * 8 6 5 10 10 Si 1.86800 * 119.99799 * 170.41840 * 8 6 5 11 11 H 1.48502 * 109.47135 * 94.14080 * 10 8 6 12 12 H 1.48496 * 109.47283 * 214.13875 * 10 8 6 13 13 H 1.48503 * 109.47377 * 334.14158 * 10 8 6 14 14 C 1.47422 * 108.70913 * 358.93908 * 5 4 2 15 15 C 1.54917 * 104.82842 * 24.13037 * 14 5 4 16 16 H 1.09000 * 111.03605 * 204.90226 * 15 14 5 17 17 N 1.46500 * 111.00421 * 81.06513 * 15 14 5 18 18 C 1.34771 * 120.00033 * 92.80379 * 17 15 14 19 19 O 1.21575 * 120.00156 * 359.97438 * 18 17 15 20 20 C 1.47688 * 120.00013 * 179.97438 * 18 17 15 21 21 C 1.41602 * 120.03209 * 0.02562 * 20 18 17 22 22 C 1.35781 * 119.55061 * 179.97438 * 21 20 18 23 23 C 1.40862 * 119.38816 * 359.97438 * 22 21 20 24 24 N 1.32489 * 133.41703 * 179.97438 * 23 22 21 25 25 N 1.28528 * 110.24623 * 180.02562 * 24 23 22 26 26 N 1.28985 * 110.84356 * 359.97438 * 25 24 23 27 27 N 1.36933 * 119.93350 * 0.02562 * 23 22 21 28 28 C 1.35493 * 120.84143 * 0.02562 * 27 23 22 29 29 H 1.09008 * 109.47091 * 296.75782 * 1 2 3 30 30 H 1.08993 * 109.47734 * 56.75172 * 1 2 3 31 31 H 1.09000 * 109.47400 * 176.76305 * 1 2 3 32 32 H 1.09007 * 109.46910 * 183.23914 * 3 2 1 33 33 H 1.08991 * 109.47194 * 303.24226 * 3 2 1 34 34 H 1.08995 * 109.47018 * 63.24443 * 3 2 1 35 35 H 1.09003 * 109.87971 * 338.86247 * 4 2 1 36 36 H 1.08997 * 109.88029 * 100.02664 * 4 2 1 37 37 H 0.96998 * 120.00269 * 179.97438 * 9 8 6 38 38 H 1.09003 * 110.36913 * 265.29462 * 14 5 4 39 39 H 1.09000 * 110.36566 * 142.96319 * 14 5 4 40 40 H 0.96997 * 119.99381 * 272.80004 * 17 15 14 41 41 H 1.07997 * 120.22629 * 0.02562 * 21 20 18 42 42 H 1.07998 * 120.30578 * 179.72580 * 22 21 20 43 43 H 1.08001 * 119.82315 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 -1.2074 5 7 3.2444 -1.5507 -0.7392 6 6 4.0042 -2.3968 -1.5021 7 1 3.6722 -2.6774 -2.4907 8 6 5.2012 -2.8936 -1.0048 9 7 5.7003 -2.4108 0.1133 10 14 6.1036 -4.2475 -1.9224 11 1 7.1174 -3.6436 -2.8240 12 1 6.7782 -5.1416 -0.9475 13 1 5.1327 -5.0335 -2.7255 14 6 3.4633 -1.2499 0.6873 15 6 2.0790 -0.7956 1.2137 16 1 2.1844 -0.1521 2.0872 17 7 1.2271 -1.9489 1.5144 18 6 1.2026 -2.4619 2.7604 19 8 1.8877 -1.9679 3.6348 20 6 0.3435 -3.6243 3.0636 21 6 -0.4544 -4.2006 2.0456 22 6 -1.2403 -5.2694 2.3351 23 6 -1.2477 -5.7873 3.6450 24 7 -1.8892 -6.7919 4.2233 25 7 -1.5613 -6.8741 5.4634 26 7 -0.7082 -5.9579 5.7741 27 7 -0.4670 -5.2119 4.6117 28 6 0.3177 -4.1447 4.3267 29 1 -0.3634 0.4627 0.9177 30 1 -0.3634 0.5634 -0.8593 31 1 -0.3634 -1.0260 -0.0580 32 1 3.1610 1.4061 -0.0581 33 1 1.6750 1.9700 -0.8594 34 1 1.7692 1.9343 0.9176 35 1 1.3127 -1.4758 -1.5777 36 1 2.3739 -0.1023 -1.9978 37 1 6.5365 -2.7583 0.4610 38 1 4.1932 -0.4479 0.7983 39 1 3.7960 -2.1428 1.2166 40 1 0.6808 -2.3432 0.8166 41 1 -0.4373 -3.7934 1.0455 42 1 -1.8570 -5.7157 1.5691 43 1 0.9266 -3.7035 5.1019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974820977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:47 Heat of formation + Delta-G solvation = 143.929655 kcal Electronic energy + Delta-G solvation = -28479.011401 eV Core-core repulsion = 24563.433296 eV Total energy + Delta-G solvation = -3915.578106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.69180 -40.43713 -38.94900 -37.77301 -34.63620 -33.96379 -33.35398 -32.31535 -30.86916 -30.82970 -28.41445 -27.10401 -25.79441 -25.59361 -24.70441 -23.47618 -23.08500 -21.41157 -20.30442 -19.28393 -18.84498 -17.79683 -17.44318 -17.17058 -16.80772 -16.03219 -15.38560 -15.16969 -15.02891 -14.47716 -14.07679 -13.95809 -13.87216 -13.83565 -13.35982 -13.19157 -12.93183 -12.78086 -12.29253 -12.15533 -12.06030 -11.96872 -11.90481 -11.47138 -11.42240 -11.36173 -11.00657 -10.87018 -10.58405 -10.45825 -10.36514 -10.20423 -10.03578 -10.01141 -9.82052 -9.01332 -8.73087 -8.67656 -6.90605 -5.84095 -3.17811 -0.17021 0.11287 1.30205 1.69301 2.41403 3.04614 3.23835 3.31592 3.32641 3.38635 3.40803 3.79009 4.06376 4.26636 4.40097 4.48100 4.63662 4.81946 4.97002 5.08483 5.12823 5.22728 5.28738 5.37187 5.39688 5.48414 5.59350 5.62272 5.74705 5.85554 5.91857 5.97968 6.02884 6.08441 6.23178 6.37911 6.42564 6.44711 6.58711 6.79196 7.34346 7.40882 7.57507 7.68868 8.04545 8.15119 8.18568 9.08249 9.70867 10.36535 11.28179 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003789 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.178912 B = 7387.462137 C = 8714.978609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.130 4.130 4 C 0.141 3.859 5 N -0.600 5.600 6 C -0.234 4.234 7 H 0.076 0.924 8 C -0.002 4.002 9 N -0.914 5.914 10 Si 0.907 3.093 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.168 3.832 15 C 0.120 3.880 16 H 0.095 0.905 17 N -0.687 5.687 18 C 0.567 3.433 19 O -0.530 6.530 20 C -0.141 4.141 21 C -0.030 4.030 22 C -0.095 4.095 23 C 0.251 3.749 24 N -0.326 5.326 25 N -0.007 5.007 26 N -0.105 5.105 27 N -0.304 5.304 28 C 0.175 3.825 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.026 0.974 37 H 0.254 0.746 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.398 0.602 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 2.312 2.203 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.187 4.187 4 C 0.015 3.985 5 N -0.326 5.326 6 C -0.362 4.362 7 H 0.094 0.906 8 C -0.200 4.200 9 N -0.560 5.560 10 Si 0.738 3.262 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.042 3.958 15 C 0.015 3.985 16 H 0.113 0.887 17 N -0.337 5.337 18 C 0.351 3.649 19 O -0.407 6.407 20 C -0.150 4.150 21 C -0.056 4.056 22 C -0.118 4.118 23 C -0.004 4.004 24 N -0.185 5.185 25 N 0.000 5.000 26 N -0.088 5.088 27 N -0.082 5.082 28 C 0.044 3.956 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.180 0.820 42 H 0.191 0.809 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.259 1.542 4.108 14.919 hybrid contribution 0.796 -0.326 -1.455 1.690 sum -13.464 1.217 2.653 13.776 Atomic orbital electron populations 1.21728 0.94503 1.01115 1.01578 1.21849 0.94891 0.95912 0.96046 1.21700 1.02144 0.93861 1.01037 1.21442 0.90451 0.92933 0.93678 1.44451 1.31079 1.50525 1.06578 1.18961 0.99905 1.18922 0.98455 0.90625 1.24808 0.96829 1.00388 0.97946 1.69924 1.20644 1.43479 1.21966 0.86191 0.79709 0.81689 0.78652 1.21550 1.21655 1.20610 1.21793 0.89014 1.00245 0.84732 1.22713 0.93000 0.85768 0.96978 0.88699 1.45681 1.45427 1.32846 1.09740 1.17367 0.81692 0.82277 0.83526 1.90839 1.42741 1.60817 1.46349 1.19868 1.02093 1.00353 0.92648 1.21523 0.91104 0.93000 0.99956 1.20313 1.02403 0.97326 0.91736 1.23121 0.91413 0.92420 0.93414 1.75171 1.25086 1.17770 1.00463 1.77871 1.03857 1.11660 1.06577 1.82880 1.19325 1.05059 1.01568 1.48801 1.28153 1.21570 1.09698 1.21750 0.90985 0.84220 0.98599 0.92707 0.92479 0.93091 0.91524 0.92549 0.92974 0.95996 0.95606 0.93561 0.94358 0.90707 0.76545 0.82019 0.80889 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.07 37.15 0.30 -1.05 16 2 C -0.09 -1.19 0.80 -152.67 -0.12 -1.31 16 3 C -0.13 -1.70 8.41 37.16 0.31 -1.39 16 4 C 0.14 2.45 6.41 -3.06 -0.02 2.43 16 5 N -0.60 -13.45 3.39 -170.07 -0.58 -14.03 16 6 C -0.23 -5.99 10.24 -15.06 -0.15 -6.15 16 7 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 8 C 0.00 -0.06 5.40 -17.43 -0.09 -0.16 16 9 N -0.91 -25.64 10.68 55.49 0.59 -25.05 16 10 Si 0.91 21.11 29.56 -169.99 -5.03 16.09 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.17 3.65 4.80 -2.53 -0.01 3.64 16 15 C 0.12 1.92 2.67 -65.78 -0.18 1.75 16 16 H 0.10 1.55 7.44 -51.93 -0.39 1.17 16 17 N -0.69 -9.25 4.50 -52.71 -0.24 -9.49 16 18 C 0.57 7.85 7.76 -12.40 -0.10 7.75 16 19 O -0.53 -9.15 15.92 5.30 0.08 -9.07 16 20 C -0.14 -1.51 5.84 -105.33 -0.62 -2.12 16 21 C -0.03 -0.24 9.53 -39.18 -0.37 -0.61 16 22 C -0.09 -0.77 10.09 -39.47 -0.40 -1.17 16 23 C 0.25 2.97 8.02 -156.27 -1.25 1.72 16 24 N -0.33 -4.54 12.26 31.10 0.38 -4.16 16 25 N -0.01 -0.10 13.35 60.35 0.81 0.71 16 26 N -0.11 -1.51 13.99 60.35 0.84 -0.66 16 27 N -0.30 -3.81 3.92 -12.06 -0.05 -3.86 16 28 C 0.17 1.95 10.77 -16.51 -0.18 1.77 16 29 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.46 6.48 -51.93 -0.34 0.12 16 32 H 0.07 1.03 7.57 -51.92 -0.39 0.64 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.02 0.36 7.76 -51.93 -0.40 -0.04 16 36 H 0.03 0.47 7.84 -51.93 -0.41 0.07 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.04 0.93 7.73 -51.93 -0.40 0.53 16 39 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 40 H 0.40 4.43 5.22 -40.82 -0.21 4.22 16 41 H 0.16 0.87 6.44 -52.49 -0.34 0.53 16 42 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.20 2.02 7.57 -52.49 -0.40 1.63 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -32.21 355.50 -6.00 -38.21 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.30 Total: 0.86 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.88 Total: 5.10 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 1.76 Total: -56.54 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -6.00 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974820977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.136 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds