Wall clock time and date at job start Tue Mar 31 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.78089 * 2 1 4 4 C 1.54330 * 110.71695 * 236.76394 * 2 1 3 5 5 N 1.47020 * 107.26873 * 219.44297 * 4 2 1 6 6 C 1.36940 * 125.64309 * 178.98682 * 5 4 2 7 7 H 1.07993 * 120.00318 * 349.94445 * 6 5 4 8 8 C 1.38816 * 119.99626 * 169.94312 * 6 5 4 9 9 N 1.31616 * 120.00466 * 350.41734 * 8 6 5 10 10 Si 1.86800 * 119.99799 * 170.41840 * 8 6 5 11 11 H 1.48502 * 109.47135 * 94.14080 * 10 8 6 12 12 H 1.48496 * 109.47283 * 214.13875 * 10 8 6 13 13 H 1.48503 * 109.47377 * 334.14158 * 10 8 6 14 14 C 1.47422 * 108.70913 * 358.93908 * 5 4 2 15 15 C 1.54917 * 104.82842 * 24.13037 * 14 5 4 16 16 H 1.09000 * 111.03605 * 204.90226 * 15 14 5 17 17 N 1.46500 * 111.00421 * 81.06513 * 15 14 5 18 18 C 1.34771 * 120.00033 * 92.80379 * 17 15 14 19 19 O 1.21575 * 120.00156 * 359.97438 * 18 17 15 20 20 C 1.47688 * 120.00013 * 179.97438 * 18 17 15 21 21 C 1.41602 * 120.03209 * 0.02562 * 20 18 17 22 22 C 1.35781 * 119.55061 * 179.97438 * 21 20 18 23 23 C 1.40862 * 119.38816 * 359.97438 * 22 21 20 24 24 N 1.32489 * 133.41703 * 179.97438 * 23 22 21 25 25 N 1.28528 * 110.24623 * 180.02562 * 24 23 22 26 26 N 1.28985 * 110.84356 * 359.97438 * 25 24 23 27 27 N 1.36933 * 119.93350 * 0.02562 * 23 22 21 28 28 C 1.35493 * 120.84143 * 0.02562 * 27 23 22 29 29 H 1.09008 * 109.47091 * 296.75782 * 1 2 3 30 30 H 1.08993 * 109.47734 * 56.75172 * 1 2 3 31 31 H 1.09000 * 109.47400 * 176.76305 * 1 2 3 32 32 H 1.09007 * 109.46910 * 183.23914 * 3 2 1 33 33 H 1.08991 * 109.47194 * 303.24226 * 3 2 1 34 34 H 1.08995 * 109.47018 * 63.24443 * 3 2 1 35 35 H 1.09003 * 109.87971 * 338.86247 * 4 2 1 36 36 H 1.08997 * 109.88029 * 100.02664 * 4 2 1 37 37 H 0.96998 * 120.00269 * 179.97438 * 9 8 6 38 38 H 1.09003 * 110.36913 * 265.29462 * 14 5 4 39 39 H 1.09000 * 110.36566 * 142.96319 * 14 5 4 40 40 H 0.96997 * 119.99381 * 272.80004 * 17 15 14 41 41 H 1.07997 * 120.22629 * 0.02562 * 21 20 18 42 42 H 1.07998 * 120.30578 * 179.72580 * 22 21 20 43 43 H 1.08001 * 119.82315 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 -1.2074 5 7 3.2444 -1.5507 -0.7392 6 6 4.0042 -2.3968 -1.5021 7 1 3.6722 -2.6774 -2.4907 8 6 5.2012 -2.8936 -1.0048 9 7 5.7003 -2.4108 0.1133 10 14 6.1036 -4.2475 -1.9224 11 1 7.1174 -3.6436 -2.8240 12 1 6.7782 -5.1416 -0.9475 13 1 5.1327 -5.0335 -2.7255 14 6 3.4633 -1.2499 0.6873 15 6 2.0790 -0.7956 1.2137 16 1 2.1844 -0.1521 2.0872 17 7 1.2271 -1.9489 1.5144 18 6 1.2026 -2.4619 2.7604 19 8 1.8877 -1.9679 3.6348 20 6 0.3435 -3.6243 3.0636 21 6 -0.4544 -4.2006 2.0456 22 6 -1.2403 -5.2694 2.3351 23 6 -1.2477 -5.7873 3.6450 24 7 -1.8892 -6.7919 4.2233 25 7 -1.5613 -6.8741 5.4634 26 7 -0.7082 -5.9579 5.7741 27 7 -0.4670 -5.2119 4.6117 28 6 0.3177 -4.1447 4.3267 29 1 -0.3634 0.4627 0.9177 30 1 -0.3634 0.5634 -0.8593 31 1 -0.3634 -1.0260 -0.0580 32 1 3.1610 1.4061 -0.0581 33 1 1.6750 1.9700 -0.8594 34 1 1.7692 1.9343 0.9176 35 1 1.3127 -1.4758 -1.5777 36 1 2.3739 -0.1023 -1.9978 37 1 6.5365 -2.7583 0.4610 38 1 4.1932 -0.4479 0.7983 39 1 3.7960 -2.1428 1.2166 40 1 0.6808 -2.3432 0.8166 41 1 -0.4373 -3.7934 1.0455 42 1 -1.8570 -5.7157 1.5691 43 1 0.9266 -3.7035 5.1019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974820977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:46 Heat of formation + Delta-G solvation = 122.008977 kcal Electronic energy + Delta-G solvation = -28479.961953 eV Core-core repulsion = 24563.433296 eV Total energy + Delta-G solvation = -3916.528658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.64595 -41.58763 -40.09592 -38.94092 -35.77130 -35.37538 -34.57940 -33.29377 -32.58863 -31.75170 -29.86362 -28.09275 -27.41810 -26.68317 -25.56563 -24.89540 -24.05341 -22.70947 -21.78529 -20.42508 -19.89166 -18.67485 -18.64641 -18.48907 -18.14095 -17.26687 -16.71842 -16.29915 -16.10173 -15.90024 -15.56080 -15.20754 -14.96215 -14.68821 -14.61203 -14.32619 -14.05653 -13.82065 -13.66981 -13.56266 -13.15193 -12.94610 -12.94169 -12.82678 -12.76791 -12.59914 -12.51930 -12.36288 -12.07325 -11.78009 -11.73644 -11.52491 -11.39116 -11.32175 -11.23673 -10.65883 -10.08539 -9.82933 -8.78138 -7.84219 -5.17672 -1.08938 -0.67734 0.37658 0.68221 1.46748 1.47958 1.48523 1.56500 1.97227 2.24300 2.45899 2.51270 2.90793 3.25647 3.36348 3.40182 3.58799 3.64798 3.73033 3.81477 3.99918 4.00912 4.13721 4.39751 4.45698 4.53263 4.58341 4.64293 4.78129 4.89918 4.93218 4.96478 5.01702 5.05025 5.08901 5.17856 5.25413 5.33258 5.42658 5.53595 5.60558 5.67807 5.75292 6.23599 6.45268 7.04608 7.08719 7.11698 7.82043 8.47011 9.26597 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003789 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.178912 B = 7387.462137 C = 8714.978609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.130 4.130 4 C 0.135 3.865 5 N -0.616 5.616 6 C -0.231 4.231 7 H 0.085 0.915 8 C -0.062 4.062 9 N -0.949 5.949 10 Si 0.966 3.034 11 H -0.292 1.292 12 H -0.303 1.303 13 H -0.262 1.262 14 C 0.178 3.822 15 C 0.137 3.863 16 H 0.091 0.909 17 N -0.677 5.677 18 C 0.569 3.431 19 O -0.569 6.569 20 C -0.132 4.132 21 C -0.015 4.015 22 C -0.076 4.076 23 C 0.241 3.759 24 N -0.342 5.342 25 N -0.024 5.024 26 N -0.129 5.129 27 N -0.307 5.307 28 C 0.166 3.834 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.020 0.980 37 H 0.243 0.757 38 H -0.004 1.004 39 H 0.029 0.971 40 H 0.414 0.586 41 H 0.199 0.801 42 H 0.214 0.786 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.684 2.519 -0.228 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.187 4.187 4 C 0.010 3.990 5 N -0.342 5.342 6 C -0.360 4.360 7 H 0.103 0.897 8 C -0.256 4.256 9 N -0.598 5.598 10 Si 0.795 3.205 11 H -0.219 1.219 12 H -0.231 1.231 13 H -0.187 1.187 14 C 0.052 3.948 15 C 0.031 3.969 16 H 0.109 0.891 17 N -0.328 5.328 18 C 0.355 3.645 19 O -0.449 6.449 20 C -0.141 4.141 21 C -0.041 4.041 22 C -0.099 4.099 23 C -0.012 4.012 24 N -0.203 5.203 25 N -0.017 5.017 26 N -0.113 5.113 27 N -0.084 5.084 28 C 0.035 3.965 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.052 0.948 38 H 0.014 0.986 39 H 0.048 0.952 40 H 0.253 0.747 41 H 0.216 0.784 42 H 0.231 0.769 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -17.470 1.748 1.633 17.633 hybrid contribution 1.804 -0.296 -0.782 1.988 sum -15.666 1.452 0.851 15.756 Atomic orbital electron populations 1.21727 0.90547 1.02978 1.03152 1.21819 0.97762 0.95071 0.92590 1.21716 0.99940 0.94083 1.03004 1.21713 0.89084 0.93178 0.94990 1.44684 1.31976 1.50729 1.06809 1.19381 0.99715 1.18217 0.98729 0.89688 1.25532 0.98219 1.02851 0.98953 1.70153 1.20705 1.45072 1.23833 0.85254 0.78672 0.79290 0.77271 1.21891 1.23062 1.18686 1.21439 0.91744 0.96840 0.84795 1.22286 0.90447 0.86558 0.97650 0.89115 1.45481 1.44863 1.32273 1.10162 1.17725 0.81269 0.82487 0.83060 1.90832 1.44407 1.62106 1.47566 1.19621 1.01983 0.99246 0.93242 1.21853 0.89485 0.92312 1.00491 1.20831 1.01927 0.96503 0.90609 1.23713 0.90934 0.92020 0.94488 1.75077 1.25956 1.18901 1.00333 1.77834 1.04369 1.12180 1.07300 1.82818 1.20026 1.05711 1.02705 1.48748 1.28441 1.21684 1.09564 1.21790 0.91246 0.84253 0.99177 0.91449 0.90650 0.91168 0.95054 0.90413 0.91163 0.93385 0.96217 0.94786 0.98567 0.95243 0.74721 0.78377 0.76897 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.07 71.98 0.58 -1.34 16 2 C -0.07 -1.77 0.80 -50.99 -0.04 -1.81 16 3 C -0.13 -3.16 8.41 71.98 0.61 -2.55 16 4 C 0.13 4.35 6.41 86.73 0.56 4.91 16 5 N -0.62 -27.43 3.39 -691.97 -2.35 -29.78 16 6 C -0.23 -11.74 10.24 84.03 0.86 -10.88 16 7 H 0.09 4.08 7.85 -2.91 -0.02 4.06 16 8 C -0.06 -3.36 5.40 84.86 0.46 -2.90 16 9 N -0.95 -55.70 10.68 21.65 0.23 -55.47 16 10 Si 0.97 43.88 29.56 68.60 2.03 45.91 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 13 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 14 C 0.18 8.01 4.80 86.86 0.42 8.43 16 15 C 0.14 4.24 2.67 46.39 0.12 4.36 16 16 H 0.09 2.94 7.44 -2.39 -0.02 2.93 16 17 N -0.68 -16.57 4.50 -438.96 -1.97 -18.55 16 18 C 0.57 14.95 7.76 86.74 0.67 15.63 16 19 O -0.57 -19.85 15.92 -3.95 -0.06 -19.91 16 20 C -0.13 -2.54 5.84 -20.33 -0.12 -2.66 16 21 C -0.02 -0.18 9.53 22.53 0.21 0.04 16 22 C -0.08 -0.91 10.09 22.34 0.23 -0.68 16 23 C 0.24 5.23 8.02 134.16 1.08 6.31 16 24 N -0.34 -9.20 12.26 -55.52 -0.68 -9.88 16 25 N -0.02 -0.71 13.35 37.02 0.49 -0.22 16 26 N -0.13 -3.75 13.99 37.02 0.52 -3.23 16 27 N -0.31 -7.46 3.92 -192.06 -0.75 -8.22 16 28 C 0.17 3.58 10.77 83.75 0.90 4.48 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.81 6.48 -2.39 -0.02 0.80 16 32 H 0.03 0.97 7.57 -2.38 -0.02 0.95 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.34 7.76 -2.39 -0.02 1.32 16 36 H 0.02 0.68 7.84 -2.39 -0.02 0.66 16 37 H 0.24 14.19 8.31 -92.71 -0.77 13.41 16 38 H 0.00 -0.18 7.73 -2.39 -0.02 -0.20 16 39 H 0.03 1.57 6.94 -2.39 -0.02 1.56 16 40 H 0.41 7.35 5.22 -92.71 -0.48 6.87 16 41 H 0.20 0.84 6.44 -2.91 -0.02 0.82 16 42 H 0.21 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.20 4.15 7.57 -2.91 -0.02 4.13 16 Total: -1.00 -76.06 355.50 4.56 -71.49 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.58 Total: 6.53 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.53 Total: 21.32 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -4.51 Total: -125.35 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.06 Total: -19.91 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -76.06 4.56 -71.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974820977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.501 kcal (2) G-P(sol) polarization free energy of solvation -76.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds