Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99878 * 2 1 4 4 H 1.48501 * 109.47308 * 240.00095 * 3 2 1 5 5 H 1.48500 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47025 * 120.00145 * 3 2 1 7 7 C 1.38809 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00167 * 189.09625 * 7 2 1 9 9 N 1.36940 * 119.99858 * 9.09925 * 7 2 1 10 10 C 1.48139 * 127.84104 * 15.57280 * 9 7 2 11 11 C 1.54384 * 104.62157 * 140.41407 * 10 9 7 12 12 H 1.08998 * 117.62195 * 242.76813 * 11 10 9 13 13 C 1.53006 * 118.12076 * 87.18677 * 11 10 9 14 14 H 1.08997 * 117.44182 * 14.47155 * 13 11 10 15 15 C 1.53004 * 117.43903 * 159.21865 * 13 11 10 16 16 N 1.46501 * 109.47059 * 185.00425 * 15 13 11 17 17 C 1.34772 * 120.00025 * 179.97438 * 16 15 13 18 18 O 1.21281 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99981 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.71377 * 60.60928 * 19 17 16 21 21 C 1.53382 * 109.71932 * 181.26761 * 19 17 16 22 22 C 1.53033 * 109.71641 * 170.20398 * 21 19 17 23 23 C 1.53606 * 109.52053 * 288.01826 * 22 21 19 24 24 C 1.50948 * 108.11727 * 51.01548 * 23 22 21 25 25 N 1.30129 * 128.28238 * 162.63642 * 24 23 22 26 26 N 1.40312 * 108.12400 * 180.27649 * 25 24 23 27 27 H 0.96999 * 126.00512 * 179.97438 * 26 25 24 28 28 C 1.35199 * 107.99337 * 359.95672 * 26 25 24 29 29 C 1.34573 * 107.61744 * 0.22541 * 28 26 25 30 30 C 1.53001 * 60.55825 * 266.86214 * 13 11 10 31 31 H 1.08996 * 119.54532 * 248.23000 * 30 13 11 32 32 C 1.48151 * 127.83416 * 195.57196 * 9 7 2 33 33 H 0.97003 * 120.00370 * 359.97438 * 1 2 3 34 34 H 1.09000 * 110.41054 * 21.62767 * 10 9 7 35 35 H 1.09006 * 110.40517 * 259.20064 * 10 9 7 36 36 H 1.08989 * 109.47427 * 64.99724 * 15 13 11 37 37 H 1.09009 * 109.46809 * 304.99432 * 15 13 11 38 38 H 0.97003 * 119.99984 * 359.97438 * 16 15 13 39 39 H 1.08999 * 109.42962 * 290.27560 * 21 19 17 40 40 H 1.08992 * 109.43547 * 50.17588 * 21 19 17 41 41 H 1.08995 * 109.42555 * 48.33754 * 22 21 19 42 42 H 1.09000 * 109.42621 * 168.17045 * 22 21 19 43 43 H 1.08999 * 110.28539 * 291.05474 * 23 22 21 44 44 H 1.09000 * 109.23645 * 170.35886 * 23 22 21 45 45 H 1.08002 * 126.19545 * 179.97438 * 28 26 25 46 46 H 1.09002 * 110.41012 * 338.36853 * 32 9 7 47 47 H 1.08995 * 110.40838 * 100.68452 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2081 0.1473 9 7 1.3384 -2.3805 -0.1886 10 6 -0.0342 -2.5705 -0.7124 11 6 0.0637 -3.8159 -1.6195 12 1 -0.1485 -3.6861 -2.6807 13 6 -0.1184 -5.1924 -0.9766 14 1 -0.5429 -5.2260 0.0267 15 6 -0.5042 -6.3539 -1.8948 16 7 -0.7483 -7.5529 -1.0892 17 6 -1.1045 -8.7063 -1.6885 18 8 -1.2225 -8.7519 -2.8947 19 6 -1.3550 -9.9399 -0.8598 20 1 -2.1724 -9.7548 -0.1628 21 6 -1.7122 -11.1160 -1.7773 22 6 -1.7274 -12.4153 -0.9690 23 6 -0.2882 -12.8112 -0.6066 24 6 0.3850 -11.6132 0.0181 25 7 1.4692 -11.5816 0.7371 26 7 1.7100 -10.2492 1.1052 27 1 2.4515 -9.9315 1.6439 28 6 0.7273 -9.4857 0.5767 29 6 -0.1058 -10.3017 -0.0949 30 6 1.2896 -4.6127 -1.1267 31 1 1.9905 -5.0764 -1.8207 32 6 1.8195 -3.7546 0.0856 33 1 -0.4851 0.8400 0.0004 34 1 -0.3434 -1.7011 -1.2926 35 1 -0.7318 -2.7500 0.1058 36 1 0.3067 -6.5468 -2.5970 37 1 -1.4087 -6.0963 -2.4461 38 1 -0.6536 -7.5166 -0.1245 39 1 -2.6969 -10.9491 -2.2140 40 1 -0.9712 -11.1933 -2.5729 41 1 -2.3091 -12.2693 -0.0589 42 1 -2.1807 -13.2076 -1.5648 43 1 0.2568 -13.1146 -1.5005 44 1 -0.3111 -13.6341 0.1078 45 1 0.6266 -8.4153 0.6788 46 1 2.9091 -3.7786 0.1074 47 1 1.4132 -4.1183 1.0293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978124191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = 89.022550 kcal Electronic energy + Delta-G solvation = -27822.128375 eV Core-core repulsion = 24007.709662 eV Total energy + Delta-G solvation = -3814.418713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91969 -39.78426 -38.69073 -36.60131 -34.99868 -33.49697 -32.57343 -31.02245 -30.64455 -28.92203 -27.48543 -27.02000 -25.41065 -24.50772 -22.15015 -21.77540 -21.09964 -20.74304 -19.78714 -19.31067 -19.10316 -17.96879 -17.10677 -16.80977 -16.00660 -15.71853 -15.36179 -15.01963 -14.79166 -14.48795 -14.33618 -14.06516 -13.62765 -13.52560 -13.23925 -13.08570 -12.84122 -12.72602 -12.56848 -12.27896 -11.90964 -11.53952 -11.35871 -11.27064 -11.15011 -11.12959 -10.85551 -10.72979 -10.67087 -10.33036 -10.18751 -10.01461 -9.78003 -9.68807 -9.45757 -9.19669 -8.97914 -8.73744 -8.67089 -6.92222 -5.84444 -3.19112 1.59066 2.29822 2.51574 2.69773 3.13109 3.35436 3.40371 3.41416 4.09091 4.11199 4.39787 4.42331 4.48210 4.57661 4.70882 4.88085 4.97240 5.10493 5.14781 5.19017 5.25755 5.29177 5.35323 5.40505 5.47070 5.48415 5.60612 5.70966 5.72292 5.77015 5.80548 5.85239 5.88691 5.92947 6.10724 6.19001 6.29068 6.34117 6.49394 6.59011 6.64818 6.84423 6.97568 7.30579 7.36860 7.42064 7.48175 7.67168 8.15481 8.16288 9.06200 9.69067 10.45713 11.29731 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024892 B = 0.002271 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.570506 B =12328.556948 C =13144.193387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.161 4.161 12 H 0.102 0.898 13 C -0.154 4.154 14 H 0.102 0.898 15 C 0.153 3.847 16 N -0.726 5.726 17 C 0.521 3.479 18 O -0.539 6.539 19 C -0.026 4.026 20 H 0.103 0.897 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.041 4.041 24 C 0.091 3.909 25 N -0.288 5.288 26 N -0.479 5.479 27 H 0.442 0.558 28 C 0.072 3.928 29 C -0.235 4.235 30 C -0.173 4.173 31 H 0.106 0.894 32 C 0.156 3.844 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.176 0.824 46 H 0.047 0.953 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -24.141 0.733 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.181 4.181 12 H 0.120 0.880 13 C -0.173 4.173 14 H 0.120 0.880 15 C 0.030 3.970 16 N -0.378 5.378 17 C 0.307 3.693 18 O -0.415 6.415 19 C -0.048 4.048 20 H 0.121 0.879 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.080 4.080 24 C -0.078 4.078 25 N -0.110 5.110 26 N -0.186 5.186 27 H 0.287 0.713 28 C -0.075 4.075 29 C -0.247 4.247 30 C -0.193 4.193 31 H 0.124 0.876 32 C 0.029 3.971 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.193 0.807 46 H 0.066 0.934 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.530 -24.513 0.404 24.646 hybrid contribution 0.346 1.799 0.464 1.890 sum -2.185 -22.714 0.868 22.835 Atomic orbital electron populations 1.69880 1.05069 1.25619 1.55565 1.24896 0.95649 0.98003 1.01641 0.86190 0.78569 0.82903 0.78035 1.21034 1.21495 1.20977 1.18939 0.90776 0.82370 1.43662 0.90652 1.45131 1.13351 0.99950 1.73266 1.21086 0.86815 0.92771 0.93549 1.24180 1.02101 0.91629 1.00234 0.88013 1.22566 1.00447 0.94181 1.00123 0.87996 1.20892 1.01066 0.82309 0.92763 1.46205 1.70512 1.10333 1.10783 1.20538 0.76073 0.84195 0.88519 1.90698 1.51286 1.85008 1.14546 1.19741 0.95310 0.93464 0.96298 0.87901 1.21403 1.03002 0.91949 0.97376 1.21635 0.95399 0.97582 1.00683 1.20219 0.94853 0.92774 1.00140 1.22326 0.93009 0.95783 0.96690 1.77029 1.18252 0.96703 1.19044 1.46327 1.23564 1.04813 1.43935 0.71349 1.22189 0.90344 0.97987 0.96965 1.19642 1.01880 0.93164 1.10049 1.24728 0.89706 1.02353 1.02548 0.87567 1.21707 0.97013 0.85959 0.92376 0.93448 0.89197 0.95854 0.91505 0.91093 0.76763 0.90727 0.90567 0.91271 0.90535 0.89548 0.89935 0.80710 0.93428 0.95653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.86 55.49 0.60 -25.78 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.63 29.56 -169.99 -5.03 16.61 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 8 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 9 N -0.59 -14.81 3.38 -166.73 -0.56 -15.37 16 10 C 0.18 4.27 5.70 -2.42 -0.01 4.26 16 11 C -0.16 -2.92 6.77 -89.21 -0.60 -3.53 16 12 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 13 C -0.15 -2.20 5.34 -90.61 -0.48 -2.69 16 14 H 0.10 1.42 8.04 -51.93 -0.42 1.01 16 15 C 0.15 1.96 5.95 -4.04 -0.02 1.93 16 16 N -0.73 -7.74 4.97 -60.29 -0.30 -8.04 16 17 C 0.52 6.20 7.09 -10.99 -0.08 6.12 16 18 O -0.54 -8.46 15.86 5.56 0.09 -8.37 16 19 C -0.03 -0.23 2.90 -92.64 -0.27 -0.50 16 20 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.10 -0.84 4.60 -26.52 -0.12 -0.96 16 22 C -0.11 -0.71 5.88 -26.40 -0.16 -0.87 16 23 C -0.04 -0.30 6.31 -27.45 -0.17 -0.47 16 24 C 0.09 0.91 7.10 -82.34 -0.58 0.33 16 25 N -0.29 -3.19 12.68 33.75 0.43 -2.76 16 26 N -0.48 -4.23 7.37 30.35 0.22 -4.01 16 27 H 0.44 2.67 8.96 -182.44 -1.64 1.03 16 28 C 0.07 0.62 10.99 -17.36 -0.19 0.43 16 29 C -0.24 -2.24 5.41 -104.98 -0.57 -2.81 16 30 C -0.17 -2.88 7.03 -87.37 -0.61 -3.50 16 31 H 0.11 1.65 8.12 -51.93 -0.42 1.23 16 32 C 0.16 3.10 7.10 -0.57 0.00 3.10 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.09 2.37 6.51 -51.93 -0.34 2.03 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 37 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 38 H 0.40 3.30 6.08 -40.82 -0.25 3.05 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.78 7.76 -51.93 -0.40 0.37 16 41 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.18 1.16 5.93 -52.49 -0.31 0.85 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -33.67 374.94 -11.41 -45.08 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.38 Total: 2.81 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -4.13 Total: -5.82 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.39 Total: -55.96 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.67 -11.41 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978124191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.103 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds