Wall clock time and date at job start Tue Mar 31 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99564 * 2 1 4 4 H 1.48504 * 109.46822 * 274.44372 * 3 2 1 5 5 H 1.48496 * 109.47075 * 34.44393 * 3 2 1 6 6 H 1.48505 * 109.46698 * 154.44548 * 3 2 1 7 7 C 1.38802 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00002 * 189.00890 * 7 2 1 9 9 N 1.36937 * 120.00090 * 9.01118 * 7 2 1 10 10 C 1.48151 * 127.83764 * 15.55113 * 9 7 2 11 11 C 1.54383 * 104.61871 * 140.41237 * 10 9 7 12 12 H 1.09002 * 118.18424 * 244.19871 * 11 10 9 13 13 C 1.53008 * 118.11977 * 87.19116 * 11 10 9 14 14 H 1.09000 * 117.40435 * 16.12328 * 13 11 10 15 15 C 1.53007 * 117.43957 * 160.80619 * 13 11 10 16 16 N 1.46494 * 109.46987 * 244.23662 * 15 13 11 17 17 C 1.34776 * 119.99706 * 179.97438 * 16 15 13 18 18 O 1.21278 * 120.00446 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99766 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.43106 * 60.10288 * 19 17 16 21 21 C 1.53116 * 109.43103 * 180.02562 * 19 17 16 22 22 C 1.53496 * 109.33623 * 189.97028 * 21 19 17 23 23 C 1.50720 * 108.04878 * 311.34996 * 22 21 19 24 24 C 1.33866 * 128.66984 * 195.79133 * 23 22 21 25 25 N 1.34426 * 107.79919 * 179.81615 * 24 23 22 26 26 C 1.30783 * 109.31876 * 0.02562 * 25 24 23 27 27 N 1.34402 * 108.55815 * 0.05179 * 26 25 24 28 28 C 1.46471 * 128.44805 * 179.86056 * 27 26 25 29 29 C 1.52995 * 60.55345 * 268.45510 * 13 11 10 30 30 H 1.08999 * 119.54155 * 246.63364 * 29 13 11 31 31 C 1.48150 * 127.83921 * 195.54761 * 9 7 2 32 32 H 0.97002 * 120.00390 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.40523 * 259.19718 * 10 9 7 34 34 H 1.09001 * 110.40728 * 21.62341 * 10 9 7 35 35 H 1.08996 * 109.46388 * 124.23996 * 15 13 11 36 36 H 1.09000 * 109.47208 * 4.23983 * 15 13 11 37 37 H 0.97004 * 120.00324 * 0.02562 * 16 15 13 38 38 H 1.08999 * 109.50060 * 309.93436 * 21 19 17 39 39 H 1.08999 * 109.50093 * 70.00302 * 21 19 17 40 40 H 1.08997 * 109.74665 * 70.96010 * 22 21 19 41 41 H 1.09004 * 109.74218 * 191.68018 * 22 21 19 42 42 H 1.07999 * 126.09789 * 359.85529 * 24 23 22 43 43 H 1.08007 * 125.72295 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.59802 * 77.54023 * 28 27 26 45 45 H 1.09002 * 109.73210 * 317.14255 * 28 27 26 46 46 H 1.09007 * 110.40238 * 100.80294 * 31 9 7 47 47 H 1.08993 * 110.50654 * 338.42020 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4036 2.1008 -1.3959 5 1 1.4976 2.6238 0.7919 6 1 3.5915 1.4150 0.6040 7 6 2.0103 -1.2020 0.0005 8 1 3.0803 -1.2077 0.1470 9 7 1.3383 -2.3807 -0.1847 10 6 -0.0352 -2.5716 -0.7060 11 6 0.0613 -3.8183 -1.6114 12 1 -0.1275 -3.6959 -2.6779 13 6 -0.1196 -5.1939 -0.9662 14 1 -0.5681 -5.2273 0.0267 15 6 -0.4702 -6.3641 -1.8875 16 7 -1.8014 -6.8721 -1.5467 17 6 -2.3226 -7.9092 -2.2317 18 8 -1.6895 -8.4222 -3.1299 19 6 -3.6922 -8.4313 -1.8815 20 1 -4.4270 -7.6364 -2.0095 21 6 -4.0420 -9.6024 -2.8038 22 6 -5.5207 -9.9707 -2.6191 23 6 -5.7916 -10.0879 -1.1411 24 6 -6.8344 -10.6574 -0.5244 25 7 -6.6492 -10.5277 0.8007 26 6 -5.5255 -9.8957 1.0207 27 7 -4.9608 -9.6025 -0.1632 28 6 -3.7016 -8.9007 -0.4227 29 6 1.2845 -4.5982 -1.0862 30 1 2.0152 -5.0722 -1.7416 31 6 1.8200 -3.7544 0.0907 32 1 -0.4851 0.8400 -0.0004 33 1 -0.7314 -2.7501 0.1136 34 1 -0.3454 -1.7030 -1.2869 35 1 0.2652 -7.1587 -1.7613 36 1 -0.4649 -6.0252 -2.9235 37 1 -2.3079 -6.4615 -0.8285 38 1 -3.8656 -9.3146 -3.8402 39 1 -3.4192 -10.4612 -2.5537 40 1 -6.1506 -9.1913 -3.0478 41 1 -5.7270 -10.9225 -3.1085 42 1 -7.6743 -11.1363 -1.0057 43 1 -5.1196 -9.6501 1.9910 44 1 -2.8641 -9.5771 -0.2518 45 1 -3.6170 -8.0393 0.2399 46 1 1.4136 -4.1176 1.0347 47 1 2.9095 -3.7799 0.1119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978407464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:45 Heat of formation + Delta-G solvation = 79.710351 kcal Electronic energy + Delta-G solvation = -27337.339717 eV Core-core repulsion = 23522.517197 eV Total energy + Delta-G solvation = -3814.822520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68091 -40.27625 -38.90435 -36.64175 -35.20713 -33.57135 -33.27638 -31.39026 -30.72144 -28.40182 -27.38495 -27.15775 -25.38024 -24.73956 -22.91894 -21.74559 -21.26663 -20.88024 -19.93260 -19.45461 -19.33806 -17.77474 -17.25522 -16.89175 -16.18430 -16.15150 -15.63465 -14.95160 -14.65243 -14.53337 -14.49010 -14.30408 -14.14280 -13.98254 -13.61481 -13.45383 -13.11422 -12.90403 -12.75034 -12.40748 -12.12765 -11.93960 -11.65641 -11.42166 -11.32258 -11.19879 -10.89848 -10.78371 -10.39317 -10.33518 -10.18036 -10.11155 -9.87307 -9.81801 -9.56870 -9.21188 -9.12546 -8.71402 -8.64406 -6.94356 -5.86663 -3.21245 1.72986 2.14964 2.42842 2.82591 2.89028 3.33547 3.39243 3.41117 3.82874 4.00549 4.05801 4.15715 4.31966 4.39885 4.45912 4.62595 4.68341 4.73377 4.78426 4.90633 5.01904 5.12631 5.20266 5.26987 5.33398 5.37803 5.40307 5.41650 5.61697 5.65762 5.71337 5.77449 5.81344 5.85776 6.03011 6.13574 6.15604 6.42753 6.44299 6.56763 6.61664 6.82481 6.86255 7.19441 7.26562 7.45044 7.64772 7.77069 7.87987 8.13762 9.04242 9.66963 10.43242 11.27622 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.002013 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.382563 B =13908.309150 C =14508.384131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.165 4.165 12 H 0.102 0.898 13 C -0.153 4.153 14 H 0.102 0.898 15 C 0.154 3.846 16 N -0.721 5.721 17 C 0.520 3.480 18 O -0.532 6.532 19 C -0.121 4.121 20 H 0.110 0.890 21 C -0.105 4.105 22 C -0.046 4.046 23 C -0.025 4.025 24 C -0.025 4.025 25 N -0.496 5.496 26 C 0.186 3.814 27 N -0.455 5.455 28 C 0.114 3.886 29 C -0.164 4.164 30 H 0.105 0.895 31 C 0.153 3.847 32 H 0.254 0.746 33 H 0.023 0.977 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.169 0.831 43 H 0.206 0.794 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.024 0.976 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 -19.879 -3.345 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.185 4.185 12 H 0.120 0.880 13 C -0.172 4.172 14 H 0.120 0.880 15 C 0.031 3.969 16 N -0.372 5.372 17 C 0.304 3.696 18 O -0.409 6.409 19 C -0.142 4.142 20 H 0.128 0.872 21 C -0.143 4.143 22 C -0.085 4.085 23 C -0.139 4.139 24 C -0.172 4.172 25 N -0.214 5.214 26 C -0.096 4.096 27 N -0.139 5.139 28 C -0.009 4.009 29 C -0.185 4.185 30 H 0.123 0.877 31 C 0.027 3.973 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.186 0.814 43 H 0.222 0.778 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.042 0.958 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.998 -20.148 -3.337 22.738 hybrid contribution 0.780 1.441 -0.144 1.644 sum -9.218 -18.707 -3.481 21.144 Atomic orbital electron populations 1.69890 1.05077 1.25451 1.55832 1.24900 0.95668 0.98024 1.01698 0.86086 0.78749 0.83229 0.77600 1.21494 1.21634 1.20457 1.19018 0.90839 0.82327 1.43370 0.90510 1.45207 1.13209 1.00009 1.73342 1.21068 0.86854 0.92796 0.93530 1.24382 1.02015 0.92124 0.99965 0.87998 1.22528 1.01149 0.93715 0.99853 0.87972 1.20908 0.82593 0.94942 0.98464 1.46100 1.19660 1.33907 1.37536 1.20145 0.87087 0.80048 0.82310 1.90735 1.61359 1.58380 1.30379 1.21642 0.96612 1.00862 0.95117 0.87211 1.21501 0.95593 0.96745 1.00465 1.20273 0.96389 1.03339 0.88455 1.21218 0.94534 1.06008 0.92153 1.21848 0.99745 1.05856 0.89741 1.70516 1.15686 1.18371 1.16844 1.24860 0.92372 1.01879 0.90486 1.45352 1.18280 1.43173 1.07114 1.21872 0.84878 0.97899 0.96294 1.23820 0.89559 1.02083 1.03013 0.87729 1.21156 0.97241 0.86000 0.92907 0.93543 0.95951 0.89203 0.91111 0.91189 0.76293 0.89214 0.90711 0.89735 0.88969 0.81386 0.77758 0.89015 0.88223 0.95840 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.18 10.86 55.49 0.60 -25.58 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.51 29.56 -169.99 -5.03 16.49 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.19 10.35 -15.06 -0.16 -6.34 16 8 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 9 N -0.59 -14.71 3.38 -168.85 -0.57 -15.28 16 10 C 0.18 4.18 5.70 -2.41 -0.01 4.16 16 11 C -0.16 -2.89 6.74 -89.22 -0.60 -3.49 16 12 H 0.10 1.72 8.12 -51.93 -0.42 1.30 16 13 C -0.15 -2.09 5.39 -90.61 -0.49 -2.58 16 14 H 0.10 1.36 8.04 -51.93 -0.42 0.95 16 15 C 0.15 1.78 5.95 -4.04 -0.02 1.76 16 16 N -0.72 -6.67 5.46 -60.30 -0.33 -7.00 16 17 C 0.52 5.12 7.14 -10.98 -0.08 5.04 16 18 O -0.53 -7.31 15.81 5.56 0.09 -7.22 16 19 C -0.12 -0.84 2.52 -91.58 -0.23 -1.07 16 20 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 21 C -0.10 -0.75 4.69 -26.41 -0.12 -0.88 16 22 C -0.05 -0.28 6.32 -27.62 -0.17 -0.46 16 23 C -0.03 -0.21 6.57 -81.72 -0.54 -0.75 16 24 C -0.02 -0.24 11.84 -17.95 -0.21 -0.45 16 25 N -0.50 -5.64 11.27 -14.87 -0.17 -5.81 16 26 C 0.19 1.64 12.66 -90.72 -1.15 0.49 16 27 N -0.46 -3.65 3.13 -114.10 -0.36 -4.01 16 28 C 0.11 0.69 6.12 -3.93 -0.02 0.66 16 29 C -0.16 -2.70 6.85 -89.22 -0.61 -3.31 16 30 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 31 C 0.15 3.05 7.04 -2.40 -0.02 3.03 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 2.33 6.51 -51.93 -0.34 1.99 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 37 H 0.40 2.88 8.01 -40.82 -0.33 2.55 16 38 H 0.09 0.69 7.77 -51.93 -0.40 0.29 16 39 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.21 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 45 H 0.10 0.41 7.83 -51.93 -0.41 0.01 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -33.74 379.91 -11.91 -45.65 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.34 Total: 1.46 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -4.54 Total: -4.43 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.82 Total: -57.68 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.09 Total: -7.22 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.74 -11.91 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978407464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.363 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds