Wall clock time and date at job start Tue Mar 31 2020 04:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35683 * 120.48149 * 2 1 4 4 C 1.40175 * 119.26707 * 180.02562 * 3 2 1 5 5 N 1.31266 * 120.35660 * 359.97438 * 4 3 2 6 6 C 1.33979 * 120.88003 * 0.04344 * 5 4 3 7 7 N 1.32502 * 132.34839 * 179.97438 * 6 5 4 8 8 C 1.33466 * 109.76028 * 179.97438 * 7 6 5 9 9 C 1.48126 * 125.32776 * 179.97438 * 8 7 6 10 10 O 1.21518 * 120.00296 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99803 * 0.02708 * 9 8 7 12 12 C 1.47021 * 125.65131 * 359.96174 * 11 9 8 13 13 C 1.54316 * 107.27470 * 181.08948 * 12 11 9 14 14 C 1.55160 * 102.94080 * 22.19221 * 13 12 11 15 15 H 1.08998 * 111.03424 * 82.58785 * 14 13 12 16 16 N 1.46499 * 111.00254 * 206.42109 * 14 13 12 17 17 C 1.46496 * 119.99944 * 53.65259 * 16 14 13 18 18 C 1.36943 * 119.99948 * 233.64884 * 16 14 13 19 19 H 1.07992 * 120.00003 * 336.66592 * 18 16 14 20 20 C 1.38809 * 119.99689 * 156.66766 * 18 16 14 21 21 N 1.31620 * 120.00171 * 331.06262 * 20 18 16 22 22 Si 1.86804 * 119.99956 * 151.06857 * 20 18 16 23 23 H 1.48502 * 109.47206 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46947 * 299.99888 * 22 20 18 25 25 H 1.48502 * 109.46730 * 59.99667 * 22 20 18 26 26 C 1.47426 * 125.64989 * 179.97438 * 11 9 8 27 27 N 1.31984 * 109.34868 * 0.26848 * 8 7 6 28 28 N 1.36165 * 120.48516 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46867 * 269.97652 * 1 2 3 30 30 H 1.09002 * 109.47731 * 29.97512 * 1 2 3 31 31 H 1.08999 * 109.47270 * 149.97810 * 1 2 3 32 32 H 1.07991 * 120.36969 * 0.04822 * 3 2 1 33 33 H 1.07990 * 119.82041 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.88001 * 300.51159 * 12 11 9 35 35 H 1.09002 * 109.88049 * 61.51428 * 12 11 9 36 36 H 1.08992 * 110.72503 * 263.82808 * 13 12 11 37 37 H 1.09003 * 110.72134 * 140.55481 * 13 12 11 38 38 H 1.09001 * 109.47066 * 272.73111 * 17 16 14 39 39 H 1.09000 * 109.47494 * 32.73306 * 17 16 14 40 40 H 1.08998 * 109.47352 * 152.73659 * 17 16 14 41 41 H 0.97001 * 119.99969 * 354.06093 * 21 20 18 42 42 H 1.08998 * 110.36598 * 36.99960 * 26 11 9 43 43 H 1.08996 * 110.36770 * 274.67929 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1693 0.0000 4 6 3.5967 1.1396 -0.0005 5 7 4.2359 -0.0069 -0.0005 6 6 3.5665 -1.1675 -0.0009 7 7 3.9688 -2.4299 -0.0014 8 6 2.9090 -3.2412 -0.0010 9 6 2.9634 -4.7215 -0.0020 10 8 1.9341 -5.3674 -0.0020 11 7 4.1546 -5.3520 -0.0027 12 6 5.4709 -4.6970 -0.0036 13 6 6.5375 -5.8118 -0.0323 14 6 5.7607 -7.0209 -0.6171 15 1 5.7234 -6.9727 -1.7054 16 7 6.3464 -8.2872 -0.1702 17 6 6.5411 -8.5398 1.2596 18 6 6.7118 -9.2346 -1.0890 19 1 6.2534 -9.2437 -2.0667 20 6 7.6714 -10.1833 -0.7634 21 7 8.6124 -9.8945 0.1104 22 14 7.6273 -11.8698 -1.5655 23 1 8.7527 -12.6916 -1.0522 24 1 6.3399 -12.5369 -1.2447 25 1 7.7545 -11.7212 -3.0376 26 6 4.3537 -6.8127 -0.0032 27 7 1.8048 -2.5182 -0.0061 28 7 2.1978 -1.1734 -0.0005 29 1 -0.3633 -0.0004 1.0278 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6693 2.1125 0.0008 33 1 4.1534 2.0649 -0.0010 34 1 5.5703 -4.0659 -0.8867 35 1 5.5855 -4.0941 0.8973 36 1 6.8925 -6.0319 0.9743 37 1 7.3671 -5.5351 -0.6831 38 1 7.5080 -8.1441 1.5702 39 1 5.7491 -8.0502 1.8263 40 1 6.5110 -9.6133 1.4463 41 1 8.6878 -8.9937 0.4620 42 1 3.5959 -7.2986 -0.6178 43 1 4.3228 -7.2001 1.0152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980316421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:19 Heat of formation + Delta-G solvation = 144.992451 kcal Electronic energy + Delta-G solvation = -27719.553898 eV Core-core repulsion = 23804.021879 eV Total energy + Delta-G solvation = -3915.532019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33314 -40.08499 -38.97627 -37.49664 -35.74035 -35.09707 -32.45360 -31.55094 -31.34252 -29.74883 -29.07457 -28.15171 -26.28654 -25.51660 -24.62100 -23.33008 -22.27326 -21.82237 -19.78144 -19.41832 -18.91190 -18.15785 -17.56408 -17.20013 -17.07785 -16.12880 -15.94370 -15.34825 -14.72456 -14.59967 -14.07411 -14.00265 -13.90981 -13.57507 -13.40125 -13.21280 -13.14909 -13.03111 -13.01687 -12.60190 -12.45398 -11.96970 -11.93691 -11.35326 -10.92865 -10.76485 -10.69167 -10.57833 -10.52541 -10.47675 -10.21551 -10.17440 -10.08771 -9.98279 -9.44786 -9.20497 -8.51460 -8.32712 -6.98320 -6.08476 -3.22478 -0.14033 0.17583 1.28730 1.53167 2.58827 2.79146 2.91573 3.24889 3.51442 3.52478 3.56202 3.70293 3.73620 4.08523 4.26113 4.52918 4.58729 4.67082 4.71488 4.75834 5.01253 5.13695 5.22876 5.37896 5.40440 5.47108 5.56825 5.61188 5.63803 5.73903 5.77374 5.90254 6.09139 6.25918 6.35202 6.44010 6.51143 6.61494 6.81716 6.89893 6.93227 7.12016 7.33978 7.54095 7.96679 8.05967 8.55042 9.07970 9.82545 10.19571 11.19200 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.002412 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.259931 B =11605.778272 C =12170.186151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 C -0.229 4.229 4 C 0.211 3.789 5 N -0.453 5.453 6 C 0.443 3.557 7 N -0.491 5.491 8 C 0.251 3.749 9 C 0.616 3.384 10 O -0.515 6.515 11 N -0.585 5.585 12 C 0.112 3.888 13 C -0.154 4.154 14 C 0.174 3.826 15 H 0.082 0.918 16 N -0.587 5.587 17 C 0.131 3.869 18 C -0.363 4.363 19 H 0.061 0.939 20 C -0.018 4.018 21 N -0.909 5.909 22 Si 1.061 2.939 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.088 3.912 27 N -0.270 5.270 28 N -0.328 5.328 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.014 0.986 39 H 0.018 0.982 40 H 0.054 0.946 41 H 0.271 0.729 42 H 0.079 0.921 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.512 27.201 1.027 30.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 C -0.254 4.254 4 C 0.025 3.975 5 N -0.167 5.167 6 C 0.082 3.918 7 N -0.225 5.225 8 C -0.033 4.033 9 C 0.398 3.602 10 O -0.388 6.388 11 N -0.318 5.318 12 C -0.011 4.011 13 C -0.194 4.194 14 C 0.064 3.936 15 H 0.100 0.900 16 N -0.308 5.308 17 C -0.014 4.014 18 C -0.491 4.491 19 H 0.078 0.922 20 C -0.221 4.221 21 N -0.548 5.548 22 Si 0.891 3.109 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.036 4.036 27 N -0.104 5.104 28 N -0.110 5.110 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.193 0.807 33 H 0.210 0.790 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.790 24.409 1.008 27.576 hybrid contribution -1.436 2.147 0.045 2.583 sum -14.226 26.556 1.053 30.145 Atomic orbital electron populations 1.21105 0.86176 1.05758 1.05124 1.20968 0.96828 0.81912 0.91635 1.21839 0.95770 0.97900 1.09890 1.23649 0.91757 0.95817 0.86277 1.68092 1.36147 0.95002 1.17501 1.22868 0.78300 0.93810 0.96796 1.71085 1.27906 0.96090 1.27444 1.24228 0.85763 0.96760 0.96503 1.15870 0.83499 0.81754 0.79098 1.90845 1.32851 1.64773 1.50365 1.48191 1.05183 1.09080 1.69322 1.22177 0.80842 0.95373 1.02685 1.23277 0.97579 0.95781 1.02809 1.21447 0.88918 0.85750 0.97523 0.89964 1.43859 1.71523 1.13274 1.02109 1.21004 0.96467 1.00015 0.83946 1.19958 1.21416 1.09836 0.97907 0.92160 1.25779 0.91642 1.04269 1.00419 1.70791 1.27827 1.23713 1.32497 0.83592 0.75826 0.76259 0.75259 1.21162 1.22002 1.21957 1.23127 1.01054 0.76994 1.02416 1.78894 1.19269 0.82874 1.29369 1.49096 1.09250 1.06351 1.46309 0.88388 0.88247 0.88968 0.80729 0.79010 0.90717 0.91023 0.90760 0.90286 0.96800 0.96308 0.92742 0.91819 0.90293 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.13 36.01 0.36 -0.15 16 2 C 0.20 1.46 6.86 -81.58 -0.56 0.90 16 3 C -0.23 -0.84 9.72 -39.77 -0.39 -1.22 16 4 C 0.21 1.08 11.27 -17.07 -0.19 0.88 16 5 N -0.45 -4.86 10.48 -13.79 -0.14 -5.00 16 6 C 0.44 6.05 8.99 -323.05 -2.90 3.15 16 7 N -0.49 -7.89 8.61 -12.24 -0.11 -7.99 16 8 C 0.25 4.26 7.78 -156.79 -1.22 3.04 16 9 C 0.62 11.47 7.87 -12.20 -0.10 11.38 16 10 O -0.51 -10.80 17.33 5.35 0.09 -10.71 16 11 N -0.58 -10.46 3.33 -171.53 -0.57 -11.03 16 12 C 0.11 1.82 5.52 -3.07 -0.02 1.80 16 13 C -0.15 -2.74 6.51 -24.90 -0.16 -2.91 16 14 C 0.17 3.57 3.55 -65.78 -0.23 3.34 16 15 H 0.08 1.74 7.95 -51.93 -0.41 1.32 16 16 N -0.59 -14.37 2.84 -171.03 -0.49 -14.85 16 17 C 0.13 3.06 7.72 59.84 0.46 3.52 16 18 C -0.36 -9.97 9.43 -15.06 -0.14 -10.11 16 19 H 0.06 1.67 7.97 -52.49 -0.42 1.25 16 20 C -0.02 -0.50 4.63 -17.43 -0.08 -0.59 16 21 N -0.91 -26.91 12.70 55.49 0.70 -26.20 16 22 Si 1.06 25.20 30.01 -169.99 -5.10 20.10 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.09 1.68 6.49 -2.52 -0.02 1.66 16 27 N -0.27 -4.24 12.67 32.02 0.41 -3.83 16 28 N -0.33 -4.04 3.91 -10.07 -0.04 -4.08 16 29 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.10 0.09 8.09 -51.93 -0.42 -0.33 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.18 -0.15 8.06 -52.49 -0.42 -0.58 16 33 H 0.19 0.08 8.06 -52.49 -0.42 -0.34 16 34 H 0.07 1.19 7.61 -51.93 -0.40 0.80 16 35 H 0.07 1.14 7.72 -51.93 -0.40 0.73 16 36 H 0.07 1.36 6.99 -51.93 -0.36 1.00 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.01 0.34 6.68 -51.93 -0.35 -0.01 16 39 H 0.02 0.38 6.28 -51.93 -0.33 0.06 16 40 H 0.05 1.38 7.25 -51.93 -0.38 1.01 16 41 H 0.27 8.02 6.31 -40.82 -0.26 7.76 16 42 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 43 H 0.07 1.44 6.26 -51.93 -0.32 1.12 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -36.32 357.32 -10.41 -46.73 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.37 Total: -3.20 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: -5.18 Total: 14.69 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -0.23 Total: -72.98 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.32 -10.41 -46.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980316421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.724 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds