Wall clock time and date at job start Tue Mar 31 2020 04:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35683 * 120.48149 * 2 1 4 4 C 1.40175 * 119.26707 * 180.02562 * 3 2 1 5 5 N 1.31266 * 120.35660 * 359.97438 * 4 3 2 6 6 C 1.33979 * 120.88003 * 0.04344 * 5 4 3 7 7 N 1.32502 * 132.34839 * 179.97438 * 6 5 4 8 8 C 1.33466 * 109.76028 * 179.97438 * 7 6 5 9 9 C 1.48126 * 125.32776 * 179.97438 * 8 7 6 10 10 O 1.21518 * 120.00296 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99803 * 0.02708 * 9 8 7 12 12 C 1.47021 * 125.65131 * 359.96174 * 11 9 8 13 13 C 1.54316 * 107.27470 * 181.08948 * 12 11 9 14 14 C 1.55160 * 102.94080 * 22.19221 * 13 12 11 15 15 H 1.08998 * 111.03424 * 82.58785 * 14 13 12 16 16 N 1.46499 * 111.00254 * 206.42109 * 14 13 12 17 17 C 1.46496 * 119.99944 * 53.65259 * 16 14 13 18 18 C 1.36943 * 119.99948 * 233.64884 * 16 14 13 19 19 H 1.07992 * 120.00003 * 336.66592 * 18 16 14 20 20 C 1.38809 * 119.99689 * 156.66766 * 18 16 14 21 21 N 1.31620 * 120.00171 * 331.06262 * 20 18 16 22 22 Si 1.86804 * 119.99956 * 151.06857 * 20 18 16 23 23 H 1.48502 * 109.47206 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46947 * 299.99888 * 22 20 18 25 25 H 1.48502 * 109.46730 * 59.99667 * 22 20 18 26 26 C 1.47426 * 125.64989 * 179.97438 * 11 9 8 27 27 N 1.31984 * 109.34868 * 0.26848 * 8 7 6 28 28 N 1.36165 * 120.48516 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46867 * 269.97652 * 1 2 3 30 30 H 1.09002 * 109.47731 * 29.97512 * 1 2 3 31 31 H 1.08999 * 109.47270 * 149.97810 * 1 2 3 32 32 H 1.07991 * 120.36969 * 0.04822 * 3 2 1 33 33 H 1.07990 * 119.82041 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.88001 * 300.51159 * 12 11 9 35 35 H 1.09002 * 109.88049 * 61.51428 * 12 11 9 36 36 H 1.08992 * 110.72503 * 263.82808 * 13 12 11 37 37 H 1.09003 * 110.72134 * 140.55481 * 13 12 11 38 38 H 1.09001 * 109.47066 * 272.73111 * 17 16 14 39 39 H 1.09000 * 109.47494 * 32.73306 * 17 16 14 40 40 H 1.08998 * 109.47352 * 152.73659 * 17 16 14 41 41 H 0.97001 * 119.99969 * 354.06093 * 21 20 18 42 42 H 1.08998 * 110.36598 * 36.99960 * 26 11 9 43 43 H 1.08996 * 110.36770 * 274.67929 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1693 0.0000 4 6 3.5967 1.1396 -0.0005 5 7 4.2359 -0.0069 -0.0005 6 6 3.5665 -1.1675 -0.0009 7 7 3.9688 -2.4299 -0.0014 8 6 2.9090 -3.2412 -0.0010 9 6 2.9634 -4.7215 -0.0020 10 8 1.9341 -5.3674 -0.0020 11 7 4.1546 -5.3520 -0.0027 12 6 5.4709 -4.6970 -0.0036 13 6 6.5375 -5.8118 -0.0323 14 6 5.7607 -7.0209 -0.6171 15 1 5.7234 -6.9727 -1.7054 16 7 6.3464 -8.2872 -0.1702 17 6 6.5411 -8.5398 1.2596 18 6 6.7118 -9.2346 -1.0890 19 1 6.2534 -9.2437 -2.0667 20 6 7.6714 -10.1833 -0.7634 21 7 8.6124 -9.8945 0.1104 22 14 7.6273 -11.8698 -1.5655 23 1 8.7527 -12.6916 -1.0522 24 1 6.3399 -12.5369 -1.2447 25 1 7.7545 -11.7212 -3.0376 26 6 4.3537 -6.8127 -0.0032 27 7 1.8048 -2.5182 -0.0061 28 7 2.1978 -1.1734 -0.0005 29 1 -0.3633 -0.0004 1.0278 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6693 2.1125 0.0008 33 1 4.1534 2.0649 -0.0010 34 1 5.5703 -4.0659 -0.8867 35 1 5.5855 -4.0941 0.8973 36 1 6.8925 -6.0319 0.9743 37 1 7.3671 -5.5351 -0.6831 38 1 7.5080 -8.1441 1.5702 39 1 5.7491 -8.0502 1.8263 40 1 6.5110 -9.6133 1.4463 41 1 8.6878 -8.9937 0.4620 42 1 3.5959 -7.2986 -0.6178 43 1 4.3228 -7.2001 1.0152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980316421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:18 Heat of formation + Delta-G solvation = 122.206693 kcal Electronic energy + Delta-G solvation = -27720.541963 eV Core-core repulsion = 23804.021879 eV Total energy + Delta-G solvation = -3916.520084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.19733 -41.40886 -39.91962 -39.06218 -36.95780 -36.36951 -33.74936 -32.89917 -32.25715 -31.41056 -29.71374 -29.53176 -28.22531 -26.85520 -25.31449 -24.72334 -23.87879 -22.81515 -21.20067 -20.88904 -19.80838 -19.54485 -19.02256 -18.29762 -18.13212 -17.52194 -16.93051 -16.43655 -16.14525 -15.87998 -15.46065 -15.24484 -15.07489 -14.81499 -14.63149 -14.41312 -14.26683 -14.09255 -13.86950 -13.83945 -13.64099 -13.36655 -13.02255 -12.73926 -12.68108 -12.62210 -12.46143 -12.34820 -11.89056 -11.80904 -11.74126 -11.53565 -11.39994 -11.12039 -11.01278 -10.47463 -9.98497 -9.93036 -9.02000 -8.26352 -5.38355 -0.80365 -0.54068 0.47797 0.49541 1.40021 1.60763 1.67425 1.80396 1.86630 2.05116 2.27461 2.62405 2.69408 3.10638 3.17366 3.22892 3.37522 3.74302 3.77507 3.84685 4.05369 4.08506 4.20566 4.25250 4.28285 4.38000 4.46459 4.50809 4.53763 4.63339 4.67216 4.79530 4.85730 4.90051 4.94579 4.98620 5.08551 5.11027 5.15416 5.22438 5.28516 5.82689 6.05467 6.17966 6.38799 6.44513 6.68379 7.01373 7.74923 8.12642 8.99514 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.002412 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.259931 B =11605.778272 C =12170.186151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.168 3.832 3 C -0.186 4.186 4 C 0.224 3.776 5 N -0.488 5.488 6 C 0.428 3.572 7 N -0.521 5.521 8 C 0.231 3.769 9 C 0.618 3.382 10 O -0.549 6.549 11 N -0.585 5.585 12 C 0.129 3.871 13 C -0.141 4.141 14 C 0.170 3.830 15 H 0.074 0.926 16 N -0.602 5.602 17 C 0.143 3.857 18 C -0.367 4.367 19 H 0.054 0.946 20 C -0.066 4.066 21 N -0.935 5.935 22 Si 1.110 2.890 23 H -0.292 1.292 24 H -0.283 1.283 25 H -0.276 1.276 26 C 0.100 3.900 27 N -0.295 5.295 28 N -0.329 5.329 29 H 0.106 0.894 30 H 0.142 0.858 31 H 0.063 0.937 32 H 0.237 0.763 33 H 0.247 0.753 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.005 0.995 39 H 0.045 0.955 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.068 0.932 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 31.435 0.785 34.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.209 4.209 4 C 0.042 3.958 5 N -0.206 5.206 6 C 0.068 3.932 7 N -0.257 5.257 8 C -0.052 4.052 9 C 0.401 3.599 10 O -0.425 6.425 11 N -0.317 5.317 12 C 0.006 3.994 13 C -0.181 4.181 14 C 0.061 3.939 15 H 0.092 0.908 16 N -0.324 5.324 17 C -0.002 4.002 18 C -0.497 4.497 19 H 0.072 0.928 20 C -0.264 4.264 21 N -0.576 5.576 22 Si 0.935 3.065 23 H -0.218 1.218 24 H -0.210 1.210 25 H -0.202 1.202 26 C -0.024 4.024 27 N -0.131 5.131 28 N -0.111 5.111 29 H 0.124 0.876 30 H 0.160 0.840 31 H 0.082 0.918 32 H 0.253 0.747 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.862 28.753 0.759 31.929 hybrid contribution -1.216 1.247 0.112 1.746 sum -15.078 30.001 0.871 33.588 Atomic orbital electron populations 1.21221 0.84232 1.06425 1.05838 1.21967 0.98605 0.81141 0.93087 1.22638 0.95208 0.98638 1.04462 1.24775 0.93096 0.95688 0.82271 1.68240 1.36943 0.95367 1.20007 1.23027 0.79001 0.94085 0.97070 1.70870 1.28278 0.97477 1.29075 1.23610 0.86805 0.95761 0.99071 1.16086 0.82928 0.82784 0.78065 1.90802 1.33824 1.65957 1.51870 1.48159 1.05767 1.08466 1.69287 1.22078 0.79344 0.94520 1.03417 1.23123 0.97789 0.94769 1.02403 1.21495 0.89784 0.85365 0.97272 0.90812 1.43983 1.71772 1.14479 1.02125 1.20832 0.96945 0.98500 0.83876 1.20165 1.20657 1.10656 0.98177 0.92816 1.27030 0.91343 1.07280 1.00780 1.70899 1.29330 1.23092 1.34281 0.82930 0.75826 0.72452 0.75340 1.21760 1.20952 1.20195 1.22814 0.99702 0.78057 1.01808 1.78692 1.19465 0.84847 1.30075 1.49132 1.09419 1.06238 1.46301 0.87579 0.84012 0.91769 0.74697 0.73703 0.90133 0.90167 0.91029 0.89729 0.97673 0.93622 0.95336 0.93072 0.91302 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.13 71.24 0.72 0.07 16 2 C 0.17 1.88 6.86 41.29 0.28 2.16 16 3 C -0.19 -0.29 9.72 22.15 0.22 -0.07 16 4 C 0.22 1.15 11.27 85.25 0.96 2.11 16 5 N -0.49 -9.33 10.48 -197.54 -2.07 -11.40 16 6 C 0.43 11.46 8.99 261.57 2.35 13.81 16 7 N -0.52 -17.08 8.61 -192.63 -1.66 -18.74 16 8 C 0.23 8.16 7.78 137.40 1.07 9.23 16 9 C 0.62 24.06 7.87 86.87 0.68 24.74 16 10 O -0.55 -24.19 17.33 -3.77 -0.07 -24.26 16 11 N -0.58 -21.51 3.33 -814.88 -2.71 -24.22 16 12 C 0.13 4.22 5.52 86.73 0.48 4.69 16 13 C -0.14 -5.04 6.51 31.78 0.21 -4.84 16 14 C 0.17 7.12 3.55 46.39 0.16 7.28 16 15 H 0.07 3.20 7.95 -2.39 -0.02 3.18 16 16 N -0.60 -30.10 2.84 -695.02 -1.97 -32.08 16 17 C 0.14 6.86 7.72 127.77 0.99 7.85 16 18 C -0.37 -20.57 9.43 84.03 0.79 -19.78 16 19 H 0.05 3.02 7.97 -2.91 -0.02 3.00 16 20 C -0.07 -3.78 4.63 84.86 0.39 -3.39 16 21 N -0.94 -56.51 12.70 21.65 0.28 -56.23 16 22 Si 1.11 51.40 30.01 68.60 2.06 53.46 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 26 C 0.10 3.94 6.49 86.86 0.56 4.50 16 27 N -0.30 -9.58 12.67 -52.61 -0.67 -10.24 16 28 N -0.33 -7.86 3.91 -185.77 -0.73 -8.59 16 29 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.14 -0.49 8.09 -2.39 -0.02 -0.51 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.24 -2.48 8.06 -2.92 -0.02 -2.50 16 33 H 0.25 -1.54 8.06 -2.92 -0.02 -1.56 16 34 H 0.08 2.59 7.61 -2.39 -0.02 2.57 16 35 H 0.08 2.55 7.72 -2.39 -0.02 2.53 16 36 H 0.07 2.62 6.99 -2.39 -0.02 2.61 16 37 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.01 0.26 6.68 -2.39 -0.02 0.24 16 39 H 0.05 1.90 6.28 -2.39 -0.01 1.88 16 40 H 0.03 1.48 7.25 -2.39 -0.02 1.46 16 41 H 0.26 15.80 6.31 -92.71 -0.58 15.21 16 42 H 0.07 2.83 8.04 -2.39 -0.02 2.81 16 43 H 0.07 2.85 6.26 -2.39 -0.01 2.83 16 Total: -1.00 -85.77 357.32 3.57 -82.21 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 1.23 Total: 1.73 kcal Atomic # 6 Polarization: 38.51 SS G_CDS: 9.87 Total: 48.38 kcal Atomic # 7 Polarization: -151.98 SS G_CDS: -9.53 Total: -161.51 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.26 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.06 Total: 53.46 kcal Total: -85.77 3.57 -82.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980316421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.415 kcal (2) G-P(sol) polarization free energy of solvation -85.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds