Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 119.99999 * 2 1 4 4 H 1.07996 * 119.99693 * 203.39724 * 3 2 1 5 5 C 1.38814 * 119.99692 * 23.39381 * 3 2 1 6 6 N 1.31615 * 120.00166 * 14.29846 * 5 3 2 7 7 Si 1.86805 * 119.99732 * 194.29467 * 5 3 2 8 8 H 1.48504 * 109.46916 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47211 * 120.00083 * 7 5 3 10 10 H 1.48504 * 109.46989 * 240.00283 * 7 5 3 11 11 C 1.46494 * 120.00169 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.89180 * 179.29648 * 11 2 1 13 13 C 1.55165 * 111.03534 * 55.39691 * 11 2 1 14 14 C 1.54320 * 102.94487 * 206.40694 * 13 11 2 15 15 N 1.47027 * 107.26847 * 22.19657 * 14 13 11 16 16 C 1.34777 * 125.64833 * 181.02463 * 15 14 13 17 17 O 1.21277 * 120.00029 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99929 * 0.03538 * 16 15 14 19 19 C 1.50692 * 109.47268 * 180.02562 * 18 16 15 20 20 N 1.32616 * 125.18526 * 269.69624 * 19 18 16 21 21 C 1.32824 * 109.75987 * 179.88299 * 20 19 18 22 22 N 1.33820 * 132.50745 * 180.11003 * 21 20 19 23 23 C 1.31346 * 120.86755 * 180.28952 * 22 21 20 24 24 C 1.40053 * 120.31089 * 359.97438 * 23 22 21 25 25 C 1.35779 * 119.23722 * 359.97438 * 24 23 22 26 26 N 1.35975 * 119.02621 * 0.02562 * 25 24 23 27 27 N 1.31182 * 125.19074 * 89.99755 * 19 18 16 28 28 C 1.47422 * 108.70550 * 1.05480 * 15 14 13 29 29 H 1.09001 * 109.47118 * 275.18510 * 1 2 3 30 30 H 1.09005 * 109.46709 * 35.18205 * 1 2 3 31 31 H 1.09001 * 109.46933 * 155.17911 * 1 2 3 32 32 H 0.97006 * 120.00094 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.71724 * 324.77559 * 13 11 2 34 34 H 1.09000 * 110.72087 * 88.04378 * 13 11 2 35 35 H 1.08994 * 109.88467 * 262.78146 * 14 13 11 36 36 H 1.08996 * 110.00899 * 141.67676 * 14 13 11 37 37 H 1.09001 * 109.46951 * 300.00528 * 18 16 15 38 38 H 1.09009 * 109.47076 * 60.00101 * 18 16 15 39 39 H 1.07998 * 119.84922 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.37892 * 179.97438 * 24 23 22 41 41 H 1.08006 * 120.48535 * 179.97438 * 25 24 23 42 42 H 1.09000 * 110.37147 * 217.03811 * 28 15 14 43 43 H 1.09003 * 110.36901 * 94.70981 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1631 1.2243 -0.3714 5 6 1.5412 2.3387 0.4773 6 7 0.4323 2.2543 1.1812 7 14 2.2962 4.0097 0.1207 8 1 3.5321 3.8329 -0.6836 9 1 1.3260 4.8396 -0.6377 10 1 2.6313 4.6847 1.4003 11 6 2.1975 -1.2687 0.0006 12 1 3.2738 -1.0961 -0.0120 13 6 1.7638 -2.1628 -1.1911 14 6 2.0568 -3.5884 -0.6782 15 7 2.0789 -3.5279 0.7907 16 6 2.3226 -4.5652 1.6160 17 8 2.3150 -4.3990 2.8173 18 6 2.6047 -5.9314 1.0460 19 6 2.8411 -6.9059 2.1709 20 7 4.0210 -7.1755 2.7131 21 6 3.8760 -8.0749 3.6797 22 7 4.7484 -8.6588 4.5097 23 6 4.3479 -9.5416 5.3959 24 6 2.9938 -9.8874 5.4872 25 6 2.1013 -9.2993 4.6499 26 7 2.5475 -8.3893 3.7435 27 7 1.9121 -7.6212 2.7593 28 6 1.7897 -2.1448 1.2112 29 1 -0.3633 0.0929 1.0235 30 1 -0.3633 0.8400 -0.5922 31 1 -0.3633 -0.9328 -0.4314 32 1 0.0068 3.0599 1.5145 33 1 0.7011 -2.0386 -1.3995 34 1 2.3599 -1.9413 -2.0764 35 1 3.0247 -3.9245 -1.0499 36 1 1.2750 -4.2719 -1.0092 37 1 1.7513 -6.2612 0.4534 38 1 3.4907 -5.8851 0.4127 39 1 5.0662 -10.0031 6.0574 40 1 2.6635 -10.6135 6.2153 41 1 1.0523 -9.5513 4.7026 42 1 2.3838 -1.8824 2.0866 43 1 0.7271 -2.0273 1.4237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980387887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = 143.567692 kcal Electronic energy + Delta-G solvation = -27234.501333 eV Core-core repulsion = 23318.907531 eV Total energy + Delta-G solvation = -3915.593802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.18335 -39.90909 -39.04187 -37.39874 -34.89835 -34.80522 -32.73664 -31.66328 -30.99588 -30.04854 -29.47561 -27.67203 -26.05344 -25.08805 -24.25244 -23.50441 -22.36976 -21.49920 -19.33191 -19.09217 -18.71907 -18.35879 -17.25668 -17.05631 -16.63314 -16.51526 -15.92194 -15.26511 -14.96866 -14.80149 -14.19818 -13.87837 -13.70090 -13.40438 -13.22831 -13.07849 -12.98265 -12.74709 -12.58619 -12.41038 -12.24549 -12.07889 -11.90498 -11.48631 -10.93073 -10.80184 -10.52785 -10.45381 -10.42460 -10.34500 -10.24971 -10.06196 -9.89378 -9.81674 -9.59946 -9.11738 -8.60572 -8.33091 -6.80951 -5.76894 -3.24758 0.04807 0.37410 1.56412 2.17630 2.77131 2.87778 3.08006 3.28792 3.37078 3.44501 3.46538 3.60405 3.87306 4.16202 4.40806 4.45912 4.60697 4.63906 4.88062 4.99196 5.07105 5.13197 5.27751 5.33098 5.43152 5.49852 5.61422 5.77744 5.80636 5.88227 5.92730 5.95361 6.01814 6.30551 6.38962 6.52526 6.63296 6.77838 6.88122 7.07929 7.30558 7.65904 7.68941 7.76255 7.78209 8.31065 8.35876 9.17801 9.80303 10.29108 11.27419 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.002164 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.791407 B =12938.255932 C =13244.147557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.172 3.828 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.534 3.466 17 O -0.537 6.537 18 C -0.049 4.049 19 C 0.304 3.696 20 N -0.510 5.510 21 C 0.442 3.558 22 N -0.453 5.453 23 C 0.204 3.796 24 C -0.228 4.228 25 C 0.175 3.825 26 N -0.326 5.326 27 N -0.321 5.321 28 C 0.088 3.912 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.004 0.996 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.190 0.810 40 H 0.174 0.826 41 H 0.183 0.817 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -27.397 2.923 27.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.320 3.680 17 O -0.413 6.413 18 C -0.092 4.092 19 C 0.022 3.978 20 N -0.241 5.241 21 C 0.081 3.919 22 N -0.167 5.167 23 C 0.017 3.983 24 C -0.253 4.253 25 C 0.036 3.964 26 N -0.105 5.105 27 N -0.152 5.152 28 C -0.036 4.036 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.207 0.793 40 H 0.192 0.808 41 H 0.200 0.800 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.908 -26.493 3.001 26.820 hybrid contribution -0.573 0.486 0.308 0.813 sum 2.335 -26.006 3.310 26.320 Atomic orbital electron populations 1.20830 0.82496 0.95678 0.99714 1.43878 1.01874 0.99893 1.84764 1.19258 0.98897 0.85147 1.35726 0.91109 1.25074 0.98020 0.98733 0.97641 1.70083 1.20420 1.27363 1.36790 0.86162 0.78521 0.84112 0.77591 1.20204 1.21567 1.21690 1.21480 0.96503 0.85772 0.90083 0.90276 1.23196 1.02927 0.92795 1.00396 1.22106 1.00941 0.99414 0.79856 1.48461 1.69208 1.09782 1.07140 1.19574 0.77515 0.84605 0.86329 1.90746 1.51712 1.84260 1.14627 1.20044 1.06180 0.89521 0.93416 1.23547 0.85446 0.93683 0.95107 1.70688 1.25127 1.17032 1.11296 1.22725 0.79741 0.94342 0.95071 1.68006 1.33021 1.10349 1.05329 1.23588 0.94938 0.88445 0.91291 1.21949 0.94050 1.05833 1.03445 1.22177 1.02209 0.86057 0.85909 1.48779 1.10121 1.27576 1.24059 1.78539 1.17820 1.13439 1.05427 1.23160 1.01240 0.78502 1.00711 0.94881 0.93950 0.97748 0.93663 0.90349 0.90414 0.91514 0.91818 0.85959 0.85421 0.79279 0.80819 0.80038 0.90892 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 7.73 59.85 0.46 4.21 16 2 N -0.58 -14.17 2.96 -171.02 -0.51 -14.68 16 3 C -0.26 -7.02 9.60 -15.06 -0.14 -7.17 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16 6 N -0.90 -26.17 10.81 55.49 0.60 -25.57 16 7 Si 0.91 21.70 29.58 -169.99 -5.03 16.67 16 8 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.17 3.41 3.54 -65.78 -0.23 3.17 16 12 H 0.08 1.59 7.95 -51.93 -0.41 1.17 16 13 C -0.15 -2.32 6.49 -24.89 -0.16 -2.49 16 14 C 0.10 1.26 6.49 -3.06 -0.02 1.24 16 15 N -0.61 -10.00 3.33 -170.52 -0.57 -10.56 16 16 C 0.53 9.13 7.84 -10.98 -0.09 9.04 16 17 O -0.54 -11.72 16.29 5.56 0.09 -11.63 16 18 C -0.05 -0.63 5.52 -29.04 -0.16 -0.79 16 19 C 0.30 4.73 6.59 -157.01 -1.03 3.70 16 20 N -0.51 -8.64 11.25 -11.80 -0.13 -8.77 16 21 C 0.44 6.50 8.99 -323.13 -2.91 3.59 16 22 N -0.45 -5.35 10.48 -13.82 -0.14 -5.49 16 23 C 0.20 1.19 11.27 -17.08 -0.19 1.00 16 24 C -0.23 -0.89 10.07 -39.78 -0.40 -1.29 16 25 C 0.17 1.22 11.32 -16.60 -0.19 1.04 16 26 N -0.33 -4.16 3.91 -13.84 -0.05 -4.22 16 27 N -0.32 -4.84 12.78 32.39 0.41 -4.43 16 28 C 0.09 1.74 6.49 -2.53 -0.02 1.72 16 29 H 0.03 0.87 7.32 -51.93 -0.38 0.49 16 30 H 0.04 1.08 7.41 -51.93 -0.38 0.70 16 31 H 0.00 0.08 6.17 -51.93 -0.32 -0.24 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 33 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.13 1.31 8.14 -51.92 -0.42 0.89 16 39 H 0.19 0.23 8.06 -52.49 -0.42 -0.20 16 40 H 0.17 -0.11 8.06 -52.49 -0.42 -0.54 16 41 H 0.18 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.07 1.61 8.04 -51.93 -0.42 1.19 16 43 H 0.07 1.44 7.20 -51.93 -0.37 1.07 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -39.05 360.99 -10.60 -49.64 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.54 Total: -3.42 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: -5.17 Total: 17.01 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -0.39 Total: -73.72 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.05 -10.60 -49.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980387887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.211 kcal (2) G-P(sol) polarization free energy of solvation -39.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds