Wall clock time and date at job start Tue Mar 31 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 119.99999 * 2 1 4 4 H 1.07996 * 119.99693 * 203.39724 * 3 2 1 5 5 C 1.38814 * 119.99692 * 23.39381 * 3 2 1 6 6 N 1.31615 * 120.00166 * 14.29846 * 5 3 2 7 7 Si 1.86805 * 119.99732 * 194.29467 * 5 3 2 8 8 H 1.48504 * 109.46916 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47211 * 120.00083 * 7 5 3 10 10 H 1.48504 * 109.46989 * 240.00283 * 7 5 3 11 11 C 1.46494 * 120.00169 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.89180 * 179.29648 * 11 2 1 13 13 C 1.55165 * 111.03534 * 55.39691 * 11 2 1 14 14 C 1.54320 * 102.94487 * 206.40694 * 13 11 2 15 15 N 1.47027 * 107.26847 * 22.19657 * 14 13 11 16 16 C 1.34777 * 125.64833 * 181.02463 * 15 14 13 17 17 O 1.21277 * 120.00029 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99929 * 0.03538 * 16 15 14 19 19 C 1.50692 * 109.47268 * 180.02562 * 18 16 15 20 20 N 1.32616 * 125.18526 * 269.69624 * 19 18 16 21 21 C 1.32824 * 109.75987 * 179.88299 * 20 19 18 22 22 N 1.33820 * 132.50745 * 180.11003 * 21 20 19 23 23 C 1.31346 * 120.86755 * 180.28952 * 22 21 20 24 24 C 1.40053 * 120.31089 * 359.97438 * 23 22 21 25 25 C 1.35779 * 119.23722 * 359.97438 * 24 23 22 26 26 N 1.35975 * 119.02621 * 0.02562 * 25 24 23 27 27 N 1.31182 * 125.19074 * 89.99755 * 19 18 16 28 28 C 1.47422 * 108.70550 * 1.05480 * 15 14 13 29 29 H 1.09001 * 109.47118 * 275.18510 * 1 2 3 30 30 H 1.09005 * 109.46709 * 35.18205 * 1 2 3 31 31 H 1.09001 * 109.46933 * 155.17911 * 1 2 3 32 32 H 0.97006 * 120.00094 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.71724 * 324.77559 * 13 11 2 34 34 H 1.09000 * 110.72087 * 88.04378 * 13 11 2 35 35 H 1.08994 * 109.88467 * 262.78146 * 14 13 11 36 36 H 1.08996 * 110.00899 * 141.67676 * 14 13 11 37 37 H 1.09001 * 109.46951 * 300.00528 * 18 16 15 38 38 H 1.09009 * 109.47076 * 60.00101 * 18 16 15 39 39 H 1.07998 * 119.84922 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.37892 * 179.97438 * 24 23 22 41 41 H 1.08006 * 120.48535 * 179.97438 * 25 24 23 42 42 H 1.09000 * 110.37147 * 217.03811 * 28 15 14 43 43 H 1.09003 * 110.36901 * 94.70981 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1631 1.2243 -0.3714 5 6 1.5412 2.3387 0.4773 6 7 0.4323 2.2543 1.1812 7 14 2.2962 4.0097 0.1207 8 1 3.5321 3.8329 -0.6836 9 1 1.3260 4.8396 -0.6377 10 1 2.6313 4.6847 1.4003 11 6 2.1975 -1.2687 0.0006 12 1 3.2738 -1.0961 -0.0120 13 6 1.7638 -2.1628 -1.1911 14 6 2.0568 -3.5884 -0.6782 15 7 2.0789 -3.5279 0.7907 16 6 2.3226 -4.5652 1.6160 17 8 2.3150 -4.3990 2.8173 18 6 2.6047 -5.9314 1.0460 19 6 2.8411 -6.9059 2.1709 20 7 4.0210 -7.1755 2.7131 21 6 3.8760 -8.0749 3.6797 22 7 4.7484 -8.6588 4.5097 23 6 4.3479 -9.5416 5.3959 24 6 2.9938 -9.8874 5.4872 25 6 2.1013 -9.2993 4.6499 26 7 2.5475 -8.3893 3.7435 27 7 1.9121 -7.6212 2.7593 28 6 1.7897 -2.1448 1.2112 29 1 -0.3633 0.0929 1.0235 30 1 -0.3633 0.8400 -0.5922 31 1 -0.3633 -0.9328 -0.4314 32 1 0.0068 3.0599 1.5145 33 1 0.7011 -2.0386 -1.3995 34 1 2.3599 -1.9413 -2.0764 35 1 3.0247 -3.9245 -1.0499 36 1 1.2750 -4.2719 -1.0092 37 1 1.7513 -6.2612 0.4534 38 1 3.4907 -5.8851 0.4127 39 1 5.0662 -10.0031 6.0574 40 1 2.6635 -10.6135 6.2153 41 1 1.0523 -9.5513 4.7026 42 1 2.3838 -1.8824 2.0866 43 1 0.7271 -2.0273 1.4237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980387887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:33 Heat of formation + Delta-G solvation = 116.621233 kcal Electronic energy + Delta-G solvation = -27235.669819 eV Core-core repulsion = 23318.907531 eV Total energy + Delta-G solvation = -3916.762288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.01012 -41.19740 -39.87238 -38.87926 -36.57329 -35.65331 -33.82814 -33.25150 -31.83069 -31.45846 -30.57754 -29.10536 -28.06099 -25.84529 -25.35352 -24.71752 -23.85409 -22.48737 -20.96174 -20.27978 -19.49076 -19.12175 -18.95678 -18.42618 -17.58978 -17.48123 -17.13246 -16.57592 -16.45428 -15.77835 -15.48201 -15.17835 -14.89481 -14.66477 -14.39389 -14.29206 -14.13958 -13.97732 -13.76296 -13.67140 -13.47627 -13.18825 -13.12808 -13.07011 -12.81118 -12.49724 -12.41313 -12.15248 -12.03474 -11.81462 -11.39920 -11.37898 -11.18387 -11.02812 -10.67348 -10.65963 -9.92850 -9.71223 -8.80657 -7.85259 -5.35578 -0.50993 -0.35053 0.84914 1.25177 1.45975 1.47308 1.48996 1.58061 1.93874 2.25824 2.38900 2.50651 2.78277 3.26168 3.34188 3.48275 3.51900 3.57946 3.90884 3.96112 4.07042 4.13212 4.20855 4.26821 4.36811 4.40123 4.47514 4.53228 4.71945 4.79865 4.83795 4.89023 5.01290 5.03658 5.06335 5.18851 5.22175 5.32910 5.36636 5.44825 5.64519 5.69835 6.30379 6.37138 6.47927 6.77421 7.01311 7.11976 7.82667 8.26629 9.17382 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.002164 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.791407 B =12938.255932 C =13244.147557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.600 5.600 3 C -0.265 4.265 4 H 0.076 0.924 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.263 1.263 9 H -0.289 1.289 10 H -0.297 1.297 11 C 0.164 3.836 12 H 0.074 0.926 13 C -0.138 4.138 14 C 0.100 3.900 15 N -0.609 5.609 16 C 0.530 3.470 17 O -0.595 6.595 18 C -0.036 4.036 19 C 0.284 3.716 20 N -0.562 5.562 21 C 0.419 3.581 22 N -0.497 5.497 23 C 0.212 3.788 24 C -0.188 4.188 25 C 0.143 3.857 26 N -0.333 5.333 27 N -0.348 5.348 28 C 0.099 3.901 29 H -0.002 1.002 30 H 0.018 0.982 31 H 0.041 0.959 32 H 0.248 0.752 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.240 0.760 40 H 0.234 0.766 41 H 0.214 0.786 42 H 0.035 0.965 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -30.934 2.323 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.321 5.321 3 C -0.395 4.395 4 H 0.093 0.907 5 C -0.250 4.250 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.187 1.187 9 H -0.216 1.216 10 H -0.224 1.224 11 C 0.055 3.945 12 H 0.092 0.908 13 C -0.178 4.178 14 C -0.021 4.021 15 N -0.342 5.342 16 C 0.319 3.681 17 O -0.477 6.477 18 C -0.078 4.078 19 C 0.002 3.998 20 N -0.295 5.295 21 C 0.059 3.941 22 N -0.214 5.214 23 C 0.030 3.970 24 C -0.212 4.212 25 C 0.007 3.993 26 N -0.112 5.112 27 N -0.180 5.180 28 C -0.027 4.027 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.256 0.744 40 H 0.250 0.750 41 H 0.230 0.770 42 H 0.053 0.947 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.542 -30.120 2.384 30.421 hybrid contribution -0.708 1.328 0.732 1.674 sum 2.833 -28.792 3.116 29.098 Atomic orbital electron populations 1.20529 0.82635 0.96423 0.97406 1.44072 1.02106 1.00903 1.85052 1.19624 0.99084 0.86361 1.34458 0.90667 1.25870 0.98807 1.02183 0.98097 1.70258 1.21998 1.27712 1.38441 0.85151 0.78130 0.79821 0.77007 1.18675 1.21569 1.22417 1.21653 0.95878 0.84744 0.92212 0.90815 1.23062 1.02972 0.92928 0.98797 1.22420 1.04426 0.98413 0.76850 1.48479 1.68668 1.08022 1.09016 1.20374 0.76092 0.86039 0.85620 1.90713 1.54215 1.85315 1.17407 1.20119 1.08770 0.85855 0.93023 1.23899 0.85375 0.94475 0.96002 1.70539 1.26489 1.19192 1.13300 1.22922 0.80958 0.94708 0.95503 1.68111 1.33393 1.12835 1.07075 1.24672 0.97195 0.85822 0.89355 1.22693 0.92427 1.04179 1.01921 1.23172 1.04754 0.85671 0.85667 1.48851 1.09597 1.28282 1.24521 1.78324 1.18680 1.14425 1.06616 1.22708 0.99208 0.81286 0.99510 0.98410 0.96333 0.94096 0.94274 0.90640 0.88235 0.87950 0.87978 0.82396 0.82704 0.74377 0.74964 0.76972 0.94677 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.56 7.73 127.77 0.99 9.55 16 2 N -0.60 -29.68 2.96 -694.99 -2.05 -31.74 16 3 C -0.27 -14.51 9.60 84.03 0.81 -13.71 16 4 H 0.08 3.96 7.86 -2.91 -0.02 3.94 16 5 C -0.05 -3.07 5.07 84.86 0.43 -2.64 16 6 N -0.94 -56.59 10.81 21.65 0.23 -56.36 16 7 Si 0.97 45.53 29.58 68.60 2.03 47.56 16 8 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 11 C 0.16 6.48 3.54 46.39 0.16 6.65 16 12 H 0.07 2.97 7.95 -2.39 -0.02 2.95 16 13 C -0.14 -3.82 6.49 31.78 0.21 -3.61 16 14 C 0.10 2.14 6.49 86.73 0.56 2.71 16 15 N -0.61 -19.46 3.33 -811.80 -2.70 -22.16 16 16 C 0.53 18.23 7.84 87.66 0.69 18.92 16 17 O -0.60 -27.41 16.29 -3.02 -0.05 -27.46 16 18 C -0.04 -0.88 5.52 29.10 0.16 -0.72 16 19 C 0.28 9.01 6.59 138.68 0.91 9.93 16 20 N -0.56 -19.76 11.25 -191.25 -2.15 -21.91 16 21 C 0.42 12.56 8.99 261.60 2.35 14.91 16 22 N -0.50 -11.40 10.48 -197.63 -2.07 -13.47 16 23 C 0.21 1.76 11.27 85.21 0.96 2.72 16 24 C -0.19 -0.63 10.07 22.14 0.22 -0.41 16 25 C 0.14 1.66 11.32 83.48 0.94 2.61 16 26 N -0.33 -8.43 3.91 -197.70 -0.77 -9.21 16 27 N -0.35 -10.65 12.78 -51.45 -0.66 -11.30 16 28 C 0.10 4.04 6.49 86.86 0.56 4.61 16 29 H 0.00 -0.14 7.32 -2.39 -0.02 -0.15 16 30 H 0.02 0.96 7.41 -2.38 -0.02 0.94 16 31 H 0.04 1.66 6.17 -2.39 -0.01 1.65 16 32 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 33 H 0.08 2.16 6.17 -2.39 -0.01 2.14 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.16 2.58 8.14 -2.39 -0.02 2.57 16 38 H 0.16 2.82 8.14 -2.38 -0.02 2.80 16 39 H 0.24 -0.67 8.06 -2.91 -0.02 -0.69 16 40 H 0.23 -1.99 8.06 -2.91 -0.02 -2.01 16 41 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.03 1.66 8.04 -2.39 -0.02 1.64 16 43 H 0.05 2.16 7.20 -2.39 -0.02 2.15 16 Total: -1.00 -96.36 360.99 2.81 -93.55 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.04 Total: 0.98 kcal Atomic # 6 Polarization: 41.55 SS G_CDS: 9.96 Total: 51.51 kcal Atomic # 7 Polarization: -155.97 SS G_CDS: -10.17 Total: -166.14 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -96.36 2.81 -93.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980387887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.170 kcal (2) G-P(sol) polarization free energy of solvation -96.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds