Wall clock time and date at job start Tue Mar 31 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28782 * 125.87245 * 2 1 4 4 N 1.28691 * 111.75879 * 179.85456 * 3 2 1 5 5 C 1.34387 * 109.15368 * 0.42130 * 4 3 2 6 6 C 1.37213 * 125.86972 * 180.32154 * 2 1 3 7 7 N 1.32213 * 134.67242 * 359.94795 * 6 2 1 8 8 C 1.31583 * 121.86769 * 179.97438 * 7 6 2 9 9 C 1.38616 * 121.63536 * 0.04239 * 8 7 6 10 10 C 1.39448 * 119.37782 * 359.97438 * 9 8 7 11 11 C 1.47868 * 121.11681 * 179.97438 * 10 9 8 12 12 O 1.21548 * 120.00316 * 204.61884 * 11 10 9 13 13 N 1.34776 * 120.00100 * 24.61244 * 11 10 9 14 14 C 1.48216 * 119.96877 * 173.50487 * 13 11 10 15 15 C 1.47720 * 110.06507 * 102.59807 * 14 13 11 16 16 C 1.53788 * 111.83890 * 58.36643 * 15 14 13 17 17 N 1.43466 * 107.95774 * 281.59753 * 16 15 14 18 18 C 1.36934 * 118.94169 * 273.62944 * 17 16 15 19 19 H 1.07999 * 119.99676 * 24.75612 * 18 17 16 20 20 C 1.38809 * 120.00359 * 204.75409 * 18 17 16 21 21 N 1.31620 * 119.99789 * 17.17267 * 20 18 17 22 22 Si 1.86797 * 120.00117 * 197.17226 * 20 18 17 23 23 H 1.48497 * 109.47304 * 60.00162 * 22 20 18 24 24 H 1.48507 * 109.47130 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47187 * 300.00060 * 22 20 18 26 26 C 1.48861 * 122.11747 * 93.65670 * 17 16 15 27 27 C 1.43620 * 119.96979 * 353.78296 * 13 11 10 28 28 H 1.09004 * 109.47185 * 269.68556 * 1 2 3 29 29 H 1.08999 * 109.47570 * 29.67703 * 1 2 3 30 30 H 1.08997 * 109.47581 * 149.68369 * 1 2 3 31 31 H 1.08001 * 119.17919 * 180.02562 * 8 7 6 32 32 H 1.07999 * 120.30807 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.32433 * 222.77994 * 14 13 11 34 34 H 1.09002 * 109.32715 * 342.24614 * 14 13 11 35 35 H 1.08998 * 109.06211 * 297.71984 * 15 14 13 36 36 H 1.09004 * 108.88688 * 178.89628 * 15 14 13 37 37 H 1.08997 * 109.76858 * 161.98159 * 16 15 14 38 38 H 1.08998 * 109.80742 * 41.23855 * 16 15 14 39 39 H 0.97003 * 120.00031 * 179.97438 * 21 20 18 40 40 H 1.09011 * 109.47437 * 200.61578 * 26 17 16 41 41 H 1.08994 * 109.49220 * 80.58816 * 26 17 16 42 42 H 1.09004 * 108.87359 * 31.41966 * 27 13 11 43 43 H 1.09000 * 108.87618 * 149.95944 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2196 1.0436 0.0000 4 7 3.4676 0.7297 0.0030 5 6 3.5857 -0.6089 -0.0041 6 6 2.2689 -1.1119 -0.0062 7 7 2.0517 -2.4160 -0.0127 8 6 3.0398 -3.2849 -0.0183 9 6 4.3651 -2.8787 -0.0169 10 6 4.6631 -1.5165 -0.0099 11 6 6.0631 -1.0405 -0.0076 12 8 6.3306 0.0589 0.4366 13 7 7.0427 -1.8257 -0.4979 14 6 8.4206 -1.2957 -0.6288 15 6 9.2672 -1.8088 0.4677 16 6 9.3144 -3.3459 0.4827 17 7 8.0984 -3.8201 1.0782 18 6 8.0310 -3.9411 2.4406 19 1 8.6733 -3.3413 3.0683 20 6 7.1373 -4.8346 3.0147 21 7 6.6052 -5.7929 2.2860 22 14 6.6897 -4.6770 4.8214 23 1 6.0741 -3.3477 5.0647 24 1 5.7242 -5.7445 5.1871 25 1 7.9152 -4.8139 5.6488 26 6 6.9077 -4.1853 0.2629 27 6 6.7490 -3.1732 -0.8987 28 1 -0.3634 -0.0056 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3634 -0.8871 -0.5187 31 1 2.8126 -4.3407 -0.0239 32 1 5.1594 -3.6105 -0.0212 33 1 8.8383 -1.6091 -1.5856 34 1 8.3936 -0.2068 -0.5893 35 1 8.8693 -1.4566 1.4193 36 1 10.2792 -1.4237 0.3420 37 1 10.1684 -3.6828 1.0703 38 1 9.3970 -3.7229 -0.5367 39 1 5.9809 -6.4175 2.6873 40 1 6.0165 -4.1614 0.8901 41 1 7.0391 -5.1878 -0.1440 42 1 5.7237 -3.2163 -1.2663 43 1 7.4247 -3.4562 -1.7058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981830273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:05 Heat of formation + Delta-G solvation = 182.148737 kcal Electronic energy + Delta-G solvation = -29661.196547 eV Core-core repulsion = 25747.275745 eV Total energy + Delta-G solvation = -3913.920802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.29359 -40.35751 -38.52892 -37.08601 -35.03013 -34.42336 -33.62494 -31.61089 -31.03464 -30.51760 -28.09535 -28.02985 -25.95010 -24.88195 -23.98762 -23.55062 -22.85970 -21.15926 -19.85433 -19.26199 -18.75617 -17.46702 -17.10341 -16.95153 -16.61539 -15.96912 -15.50919 -15.26017 -14.80351 -14.35748 -13.98136 -13.90450 -13.69476 -13.46250 -13.24798 -13.00462 -12.93737 -12.65277 -12.39358 -12.25232 -12.17273 -11.74562 -11.50414 -11.22504 -11.12094 -10.87859 -10.76404 -10.58699 -10.36631 -10.24531 -10.01043 -9.87942 -9.78570 -9.18873 -9.04769 -8.80917 -8.54079 -8.13286 -6.80872 -5.90336 -3.29392 0.20044 1.00640 1.89883 2.27505 3.07961 3.27963 3.34644 3.39630 3.45328 3.66831 3.76340 4.26658 4.37884 4.44185 4.59419 4.66902 4.80453 5.03979 5.07907 5.10927 5.27296 5.36420 5.49838 5.56595 5.61301 5.65963 5.71275 5.86938 5.90396 5.95381 5.98710 6.20798 6.23399 6.39003 6.44594 6.47860 6.76007 6.77822 6.96755 7.14481 7.25058 7.56047 7.74174 7.81150 8.26706 8.33640 8.53904 9.10542 9.77741 10.22313 11.18491 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.005038 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.624360 B = 5556.075764 C = 6659.447130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.314 5.314 3 N -0.016 5.016 4 N -0.220 5.220 5 C 0.001 3.999 6 C 0.205 3.795 7 N -0.465 5.465 8 C 0.161 3.839 9 C -0.179 4.179 10 C -0.008 4.008 11 C 0.559 3.441 12 O -0.519 6.519 13 N -0.574 5.574 14 C 0.132 3.868 15 C -0.171 4.171 16 C 0.162 3.838 17 N -0.586 5.586 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.909 5.909 22 Si 0.894 3.106 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.146 3.854 27 C 0.046 3.954 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.183 0.817 32 H 0.213 0.787 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.255 0.745 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.351 3.617 -9.822 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.117 5.117 3 N 0.003 4.997 4 N -0.095 5.095 5 C -0.128 4.128 6 C -0.037 4.037 7 N -0.179 5.179 8 C -0.011 4.011 9 C -0.201 4.201 10 C -0.024 4.024 11 C 0.346 3.654 12 O -0.395 6.395 13 N -0.306 5.306 14 C 0.011 3.989 15 C -0.212 4.212 16 C 0.034 3.966 17 N -0.308 5.308 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.554 5.554 22 Si 0.724 3.276 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.208 1.208 26 C 0.020 3.980 27 C -0.079 4.079 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.200 0.800 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.239 5.438 -9.549 14.357 hybrid contribution 0.181 -0.865 1.190 1.483 sum -9.058 4.572 -8.358 13.146 Atomic orbital electron populations 1.22210 0.71759 1.05772 1.04946 1.46905 1.08865 1.02113 1.53773 1.78178 0.97181 1.11171 1.13173 1.75448 1.06526 1.11047 1.16439 1.20097 0.93418 0.92142 1.07131 1.19754 0.88363 0.89522 1.06013 1.66259 1.38092 0.98927 1.14640 1.22972 0.87098 0.98887 0.92174 1.24559 1.01289 0.96825 0.97380 1.19603 0.92747 0.91900 0.98181 1.17807 0.83951 0.84831 0.78791 1.90788 1.82975 1.20997 1.44696 1.47209 1.08695 1.12340 1.62328 1.20736 0.80310 0.99342 0.98540 1.21982 0.98057 1.01237 0.99916 1.20313 0.89740 0.90385 0.96152 1.43542 1.07650 1.76359 1.03231 1.19160 1.20536 1.16438 0.82030 0.91632 1.24884 1.01309 0.95371 0.97600 1.69986 1.33755 1.16040 1.35666 0.86479 0.78333 0.77298 0.85468 1.21114 1.21474 1.20784 1.22226 0.92070 0.93325 0.90362 1.22994 1.01804 0.83161 0.99945 0.89326 0.88055 0.88083 0.80040 0.77154 0.91699 0.90258 0.91061 0.92420 0.93316 0.94636 0.93478 0.89137 0.92943 0.89598 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.41 59.84 0.68 1.43 16 2 N -0.31 -4.46 3.79 -67.23 -0.26 -4.72 16 3 N -0.02 -0.26 13.07 60.35 0.79 0.53 16 4 N -0.22 -4.35 12.17 32.23 0.39 -3.96 16 5 C 0.00 0.02 6.97 -84.72 -0.59 -0.57 16 6 C 0.21 3.36 8.08 -156.20 -1.26 2.09 16 7 N -0.47 -6.90 10.35 -12.38 -0.13 -7.03 16 8 C 0.16 2.19 11.14 -17.52 -0.20 2.00 16 9 C -0.18 -2.83 7.30 -38.99 -0.28 -3.11 16 10 C -0.01 -0.15 5.67 -104.51 -0.59 -0.74 16 11 C 0.56 11.40 7.54 -12.32 -0.09 11.30 16 12 O -0.52 -12.18 16.08 5.32 0.09 -12.10 16 13 N -0.57 -10.24 2.45 -177.45 -0.43 -10.67 16 14 C 0.13 2.14 5.70 -5.65 -0.03 2.11 16 15 C -0.17 -2.97 5.65 -28.87 -0.16 -3.14 16 16 C 0.16 3.07 5.63 -5.24 -0.03 3.04 16 17 N -0.59 -13.13 2.54 -172.00 -0.44 -13.57 16 18 C -0.25 -6.51 9.26 -15.06 -0.14 -6.65 16 19 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 20 C 0.01 0.16 4.88 -17.43 -0.09 0.08 16 21 N -0.91 -23.63 11.05 55.49 0.61 -23.01 16 22 Si 0.89 21.31 29.59 -169.99 -5.03 16.28 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.15 2.88 4.42 -1.75 -0.01 2.87 16 27 C 0.05 0.73 4.71 -4.58 -0.02 0.71 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.18 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.21 3.37 1.70 -52.49 -0.09 3.28 16 33 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.08 1.34 7.20 -51.93 -0.37 0.96 16 35 H 0.07 1.51 7.91 -51.93 -0.41 1.09 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 38 H 0.04 0.60 7.59 -51.93 -0.39 0.21 16 39 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 40 H 0.09 1.96 4.29 -51.92 -0.22 1.74 16 41 H 0.05 1.08 8.00 -51.93 -0.42 0.67 16 42 H 0.09 1.19 4.54 -51.93 -0.24 0.96 16 43 H 0.07 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -33.61 342.64 -7.09 -40.70 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.04 Total: 0.95 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -2.81 Total: 11.44 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.54 Total: -62.44 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.61 -7.09 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981830273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.850 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds