Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36941 * 119.99583 * 2 1 4 4 H 1.07997 * 119.99732 * 202.69299 * 3 2 1 5 5 C 1.38810 * 120.00251 * 22.70196 * 3 2 1 6 6 N 1.31621 * 120.00057 * 13.49226 * 5 3 2 7 7 Si 1.86798 * 120.00038 * 193.48899 * 5 3 2 8 8 H 1.48509 * 109.46711 * 89.99933 * 7 5 3 9 9 H 1.48491 * 109.47281 * 209.99790 * 7 5 3 10 10 H 1.48498 * 109.47234 * 330.00174 * 7 5 3 11 11 C 1.46498 * 120.00186 * 180.02562 * 2 1 3 12 12 C 1.53045 * 109.45374 * 299.99912 * 11 2 1 13 13 C 1.53192 * 109.30795 * 181.37337 * 12 11 2 14 14 N 1.46928 * 108.77743 * 305.35930 * 13 12 11 15 15 C 1.34773 * 120.63346 * 233.58717 * 14 13 12 16 16 O 1.21618 * 119.99923 * 5.45807 * 15 14 13 17 17 C 1.47314 * 119.99812 * 185.45452 * 15 14 13 18 18 C 1.39003 * 120.90879 * 48.92686 * 17 15 14 19 19 C 1.39715 * 119.29576 * 180.02562 * 18 17 15 20 20 C 1.35258 * 121.07636 * 359.97438 * 19 18 17 21 21 N 1.35710 * 121.57610 * 0.04159 * 20 19 18 22 22 N 1.40208 * 134.08711 * 179.97438 * 21 20 19 23 23 N 1.29022 * 106.96069 * 179.97438 * 22 21 20 24 24 N 1.28594 * 110.78702 * 0.02562 * 23 22 21 25 25 C 1.32047 * 110.21147 * 359.97438 * 24 23 22 26 26 C 1.46931 * 118.73344 * 53.86540 * 14 13 12 27 27 C 1.53044 * 109.44871 * 60.05483 * 11 2 1 28 28 H 1.08997 * 109.47224 * 267.89332 * 1 2 3 29 29 H 1.08997 * 109.47086 * 27.89270 * 1 2 3 30 30 H 1.08998 * 109.47328 * 147.89355 * 1 2 3 31 31 H 0.96992 * 120.00189 * 180.02562 * 6 5 3 32 32 H 1.08995 * 109.45988 * 180.02562 * 11 2 1 33 33 H 1.09000 * 109.49917 * 61.42460 * 12 11 2 34 34 H 1.08994 * 109.52378 * 301.33660 * 12 11 2 35 35 H 1.09003 * 109.58351 * 185.57653 * 13 12 11 36 36 H 1.08995 * 109.70697 * 65.22295 * 13 12 11 37 37 H 1.07999 * 120.35028 * 359.97438 * 18 17 15 38 38 H 1.08002 * 119.46168 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.21208 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.59080 * 65.92888 * 26 14 13 41 41 H 1.09001 * 109.58288 * 186.35516 * 26 14 13 42 42 H 1.08997 * 109.49845 * 298.57799 * 27 11 2 43 43 H 1.09004 * 109.49451 * 58.67615 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1669 1.2222 -0.3608 5 6 1.5362 2.3415 0.4639 6 7 0.4116 2.2624 1.1431 7 14 2.3069 4.0089 0.1244 8 1 1.7841 4.5438 -1.1586 9 1 1.9670 4.9449 1.2260 10 1 3.7821 3.8636 0.0357 11 6 2.1976 -1.2687 -0.0006 12 6 1.8276 -2.0714 1.2488 13 6 2.6210 -3.3818 1.2623 14 7 2.3844 -4.0910 -0.0025 15 6 1.9580 -5.3695 -0.0036 16 8 1.6704 -5.9155 1.0444 17 6 1.8403 -6.1056 -1.2743 18 6 2.8823 -6.1133 -2.1942 19 6 2.7342 -6.8221 -3.3890 20 6 1.5957 -7.4992 -3.6626 21 7 0.5539 -7.5182 -2.7932 22 7 -0.7150 -8.1146 -2.8041 23 7 -1.2927 -7.7907 -1.6968 24 7 -0.5239 -7.0490 -0.9810 25 6 0.6237 -6.8478 -1.6024 26 6 2.6274 -3.3818 -1.2662 27 6 1.8285 -2.0696 -1.2514 28 1 -0.3633 -0.0378 1.0269 29 1 -0.3633 0.9082 -0.4807 30 1 -0.3634 -0.8705 -0.5462 31 1 -0.0173 3.0698 1.4670 32 1 3.2691 -1.0693 0.0000 33 1 0.7603 -2.2925 1.2364 34 1 2.0687 -1.4910 2.1393 35 1 2.2896 -4.0010 2.0959 36 1 3.6843 -3.1666 1.3672 37 1 3.7963 -5.5763 -1.9879 38 1 3.5423 -6.8303 -4.1055 39 1 1.5138 -8.0375 -4.5954 40 1 3.6909 -3.1643 -1.3646 41 1 2.3001 -4.0010 -2.1014 42 1 0.7612 -2.2906 -1.2401 43 1 2.0707 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985446685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = 155.004249 kcal Electronic energy + Delta-G solvation = -28402.017778 eV Core-core repulsion = 24486.919902 eV Total energy + Delta-G solvation = -3915.097875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.66916 -40.42133 -38.79627 -37.57341 -35.19838 -34.38343 -32.42624 -32.30052 -31.33747 -30.45127 -29.68291 -26.18306 -25.99270 -24.87686 -24.63831 -23.66234 -22.86026 -22.07770 -20.39654 -19.31534 -18.64870 -18.03643 -17.29418 -17.06325 -16.78966 -16.31687 -16.13038 -15.07469 -15.05869 -14.34747 -14.12188 -13.95717 -13.73837 -13.56046 -13.47824 -13.24022 -13.02985 -12.80459 -12.70763 -12.49278 -12.34051 -11.85024 -11.65089 -11.52294 -11.28525 -11.02798 -10.91647 -10.83226 -10.62314 -10.39782 -10.28209 -10.21279 -10.03166 -9.88813 -9.64533 -9.01972 -8.66109 -8.52371 -6.78542 -5.76377 -3.20974 -0.36876 0.09030 1.24180 1.81730 2.20492 2.58276 2.93560 3.18766 3.35384 3.41442 3.43502 3.54147 3.92359 4.01389 4.26065 4.45083 4.61648 4.84219 4.87975 4.94028 5.06133 5.14511 5.19511 5.28573 5.31562 5.41560 5.44595 5.50188 5.70782 5.79258 5.87526 5.92935 6.08337 6.17172 6.28465 6.47710 6.52690 6.78931 6.92809 6.97181 7.27387 7.37896 7.68845 7.78134 7.97347 8.06163 8.37740 9.20586 9.84343 10.34050 11.29758 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.002852 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.476749 B = 9816.147640 C = 9881.636317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.595 5.595 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.180 3.820 12 C -0.146 4.146 13 C 0.116 3.884 14 N -0.594 5.594 15 C 0.566 3.434 16 O -0.513 6.513 17 C -0.086 4.086 18 C -0.025 4.025 19 C -0.140 4.140 20 C 0.122 3.878 21 N -0.307 5.307 22 N -0.107 5.107 23 N -0.005 5.005 24 N -0.300 5.300 25 C 0.270 3.730 26 C 0.102 3.898 27 C -0.148 4.148 28 H 0.019 0.981 29 H 0.052 0.948 30 H -0.005 1.005 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.167 0.833 38 H 0.176 0.824 39 H 0.184 0.816 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -18.224 -11.890 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.316 5.316 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.186 4.186 13 C -0.006 4.006 14 N -0.327 5.327 15 C 0.351 3.649 16 O -0.389 6.389 17 C -0.095 4.095 18 C -0.051 4.051 19 C -0.163 4.163 20 C -0.005 4.005 21 N -0.087 5.087 22 N -0.090 5.090 23 N 0.002 4.998 24 N -0.157 5.157 25 C 0.012 3.988 26 C -0.021 4.021 27 C -0.189 4.189 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.185 0.815 38 H 0.193 0.807 39 H 0.201 0.799 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.463 -18.956 -11.043 23.173 hybrid contribution 1.052 1.234 -0.550 1.713 sum 8.516 -17.722 -11.593 22.825 Atomic orbital electron populations 1.20727 0.82746 0.96622 0.98048 1.43952 1.01773 1.00142 1.85744 1.19220 0.98197 0.85411 1.35854 0.91395 1.25016 0.97975 0.98514 0.98121 1.70078 1.19474 1.27196 1.38213 0.86268 0.78673 0.84231 0.77414 1.21553 1.21789 1.20510 1.20279 0.96020 0.86132 0.90479 1.22514 1.00248 0.94206 1.01666 1.21799 1.00032 0.93918 0.84884 1.48070 1.65200 1.10652 1.08818 1.17430 0.78326 0.81927 0.87231 1.90868 1.48132 1.67904 1.31964 1.20272 0.90520 1.00885 0.97829 1.22030 0.98123 0.94205 0.90722 1.21025 0.97613 0.98656 0.99024 1.21773 0.84521 0.99154 0.95100 1.48962 1.13309 1.31938 1.14462 1.82813 0.87243 1.21002 1.17968 1.78036 1.20579 1.04476 0.96721 1.75220 0.99551 1.17206 1.23737 1.23609 0.95933 0.94903 0.84400 1.22135 1.00651 0.94489 0.84836 1.22563 1.00211 0.94425 1.01656 0.96260 0.92917 0.98679 0.93700 0.91783 0.92012 0.90324 0.89269 0.91148 0.81534 0.80682 0.79861 0.90642 0.90688 0.91849 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.09 59.85 0.48 4.45 16 2 N -0.59 -14.08 2.81 -173.44 -0.49 -14.57 16 3 C -0.26 -6.73 9.59 -15.06 -0.14 -6.88 16 4 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 5 C 0.00 0.06 5.04 -17.43 -0.09 -0.02 16 6 N -0.90 -25.98 10.77 55.49 0.60 -25.38 16 7 Si 0.90 21.23 29.57 -169.99 -5.03 16.20 16 8 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.18 3.29 2.56 -67.89 -0.17 3.12 16 12 C -0.15 -2.54 5.34 -26.61 -0.14 -2.68 16 13 C 0.12 1.61 6.44 -3.71 -0.02 1.59 16 14 N -0.59 -7.64 2.97 -173.81 -0.52 -8.15 16 15 C 0.57 7.98 7.27 -12.57 -0.09 7.89 16 16 O -0.51 -9.27 16.48 5.26 0.09 -9.19 16 17 C -0.09 -0.95 4.98 -102.71 -0.51 -1.46 16 18 C -0.03 -0.14 7.67 -38.75 -0.30 -0.44 16 19 C -0.14 -0.42 9.92 -40.09 -0.40 -0.82 16 20 C 0.12 0.63 11.15 -16.90 -0.19 0.44 16 21 N -0.31 -3.31 3.94 -10.99 -0.04 -3.35 16 22 N -0.11 -1.44 13.99 60.35 0.84 -0.60 16 23 N -0.01 -0.08 13.36 60.35 0.81 0.72 16 24 N -0.30 -5.06 12.24 32.20 0.39 -4.67 16 25 C 0.27 3.64 8.01 -154.52 -1.24 2.41 16 26 C 0.10 1.07 5.35 -3.48 -0.02 1.06 16 27 C -0.15 -2.21 5.32 -26.38 -0.14 -2.35 16 28 H 0.02 0.51 7.75 -51.93 -0.40 0.10 16 29 H 0.05 1.40 6.84 -51.93 -0.36 1.04 16 30 H -0.01 -0.11 6.46 -51.93 -0.34 -0.45 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.15 7.86 -51.93 -0.41 0.74 16 33 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.17 0.49 7.39 -52.49 -0.39 0.10 16 38 H 0.18 -0.23 8.06 -52.49 -0.42 -0.65 16 39 H 0.18 0.26 8.06 -52.48 -0.42 -0.17 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.63 5.13 -51.93 -0.27 0.36 16 42 H 0.06 1.06 6.73 -51.93 -0.35 0.71 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -35.97 351.89 -6.36 -42.34 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -5.35 Total: -4.95 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -2.97 Total: 6.30 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 1.60 Total: -56.00 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.97 -6.36 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985446685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.340 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds