Wall clock time and date at job start Tue Mar 31 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35682 * 120.48749 * 2 1 4 4 C 1.40178 * 119.27215 * 179.97438 * 3 2 1 5 5 N 1.31256 * 120.35512 * 359.97438 * 4 3 2 6 6 C 1.33980 * 120.88536 * 0.02562 * 5 4 3 7 7 N 1.32498 * 132.34615 * 180.31926 * 6 5 4 8 8 C 1.33477 * 109.75167 * 180.08403 * 7 6 5 9 9 C 1.48130 * 125.31799 * 179.87675 * 8 7 6 10 10 O 1.21523 * 119.99636 * 185.95175 * 9 8 7 11 11 N 1.34769 * 120.00182 * 5.96249 * 9 8 7 12 12 C 1.48220 * 119.96848 * 175.32402 * 11 9 8 13 13 C 1.47142 * 110.34084 * 102.46256 * 12 11 9 14 14 C 1.53797 * 111.83975 * 58.30185 * 13 12 11 15 15 N 1.43463 * 107.95623 * 281.66028 * 14 13 12 16 16 C 1.36931 * 118.94424 * 273.60966 * 15 14 13 17 17 H 1.08001 * 119.99759 * 22.42765 * 16 15 14 18 18 C 1.38813 * 120.00297 * 202.42581 * 16 15 14 19 19 N 1.31609 * 119.99969 * 35.21098 * 18 16 15 20 20 Si 1.86803 * 119.99750 * 215.21044 * 18 16 15 21 21 H 1.48503 * 109.47083 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47444 * 59.99830 * 20 18 16 23 23 H 1.48505 * 109.47218 * 299.99779 * 20 18 16 24 24 C 1.48866 * 122.11925 * 93.89251 * 15 14 13 25 25 C 1.43617 * 119.97173 * 355.29448 * 11 9 8 26 26 N 1.31985 * 109.35189 * 359.61772 * 8 7 6 27 27 N 1.36170 * 120.48734 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47272 * 270.02496 * 1 2 3 29 29 H 1.09006 * 109.47067 * 30.02520 * 1 2 3 30 30 H 1.09000 * 109.47126 * 150.02177 * 1 2 3 31 31 H 1.08000 * 120.36676 * 359.95684 * 3 2 1 32 32 H 1.08001 * 119.81817 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.32490 * 342.19701 * 12 11 9 34 34 H 1.09001 * 109.17981 * 222.64011 * 12 11 9 35 35 H 1.08994 * 109.01049 * 297.69340 * 13 12 11 36 36 H 1.08998 * 109.00108 * 178.90257 * 13 12 11 37 37 H 1.08992 * 109.76469 * 162.04910 * 14 13 12 38 38 H 1.09003 * 109.80852 * 41.29957 * 14 13 12 39 39 H 0.96999 * 120.00603 * 5.77543 * 19 18 16 40 40 H 1.09003 * 109.47916 * 80.34363 * 24 15 14 41 41 H 1.08999 * 109.47930 * 200.37736 * 24 15 14 42 42 H 1.08998 * 108.87208 * 31.47295 * 25 11 9 43 43 H 1.09005 * 108.87243 * 149.90787 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5968 1.1395 0.0005 5 7 4.2359 -0.0069 0.0016 6 6 3.5666 -1.1675 0.0016 7 7 3.9689 -2.4299 0.0079 8 6 2.9090 -3.2412 0.0028 9 6 2.9636 -4.7215 0.0047 10 8 1.9406 -5.3674 -0.1096 11 7 4.1478 -5.3520 0.1333 12 6 4.1921 -6.8297 0.2394 13 6 4.6002 -7.4227 -1.0439 14 6 5.9758 -6.9082 -1.5002 15 7 5.7956 -5.5986 -2.0576 16 6 5.4614 -5.4816 -3.3803 17 1 4.9909 -6.3074 -3.8934 18 6 5.7272 -4.3018 -4.0617 19 7 6.8098 -3.6087 -3.7798 20 14 4.5481 -3.6981 -5.3788 21 1 5.0550 -2.4250 -5.9511 22 1 3.2090 -3.4717 -4.7784 23 1 4.4427 -4.7173 -6.4538 24 6 5.9664 -4.3625 -1.2458 25 6 5.3656 -4.5915 0.1669 26 7 1.8048 -2.5182 0.0013 27 7 2.1978 -1.1734 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6693 2.1125 -0.0007 32 1 4.1536 2.0649 0.0001 33 1 3.2041 -7.2017 0.5107 34 1 4.9082 -7.1120 1.0112 35 1 3.8583 -7.1727 -1.8023 36 1 4.6444 -8.5064 -0.9360 37 1 6.3873 -7.5770 -2.2560 38 1 6.6522 -6.8557 -0.6469 39 1 7.4640 -3.9627 -3.1573 40 1 7.0274 -4.1280 -1.1595 41 1 5.4493 -3.5347 -1.7310 42 1 5.1643 -3.6236 0.6258 43 1 6.0967 -5.1232 0.7760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989603339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:25 Heat of formation + Delta-G solvation = 156.550250 kcal Electronic energy + Delta-G solvation = -29592.264476 eV Core-core repulsion = 25677.233640 eV Total energy + Delta-G solvation = -3915.030836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.99168 -39.96616 -38.63796 -37.03330 -35.41143 -34.40641 -32.98443 -31.67873 -30.99591 -30.70378 -28.76893 -27.65475 -25.97038 -24.64069 -24.29457 -23.50463 -22.35282 -21.32256 -19.69381 -19.24711 -18.56028 -17.81671 -17.30715 -16.84794 -16.55441 -15.91109 -15.73697 -14.94620 -14.54056 -14.37532 -14.13025 -13.87831 -13.65296 -13.57363 -13.37589 -13.06418 -12.90749 -12.77695 -12.73593 -12.45155 -12.22071 -11.92333 -11.64456 -11.28231 -10.95588 -10.64669 -10.28142 -10.21264 -10.19579 -10.14946 -10.02746 -9.94942 -9.80814 -9.53308 -9.37840 -8.83201 -8.14318 -8.09889 -6.79308 -6.02959 -3.02429 0.20490 0.53009 1.64351 1.88170 2.93258 3.14067 3.27845 3.53129 3.59374 3.60748 3.75412 3.83282 4.03975 4.43106 4.57775 4.70384 4.84280 4.93979 5.00010 5.03248 5.26771 5.37719 5.45134 5.58737 5.65983 5.70737 5.76383 5.85621 5.90347 5.92082 6.07177 6.17262 6.17673 6.41904 6.49677 6.65857 6.81195 6.83123 7.01675 7.23576 7.30507 7.35205 7.64729 7.84707 8.18089 8.39056 8.67403 9.26516 9.98367 10.38798 11.26265 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.005392 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.100328 B = 5191.750403 C = 6292.111635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.202 3.798 3 C -0.230 4.230 4 C 0.208 3.792 5 N -0.447 5.447 6 C 0.442 3.558 7 N -0.479 5.479 8 C 0.254 3.746 9 C 0.611 3.389 10 O -0.523 6.523 11 N -0.555 5.555 12 C 0.132 3.868 13 C -0.171 4.171 14 C 0.164 3.836 15 N -0.596 5.596 16 C -0.361 4.361 17 H 0.054 0.946 18 C -0.012 4.012 19 N -0.897 5.897 20 Si 1.039 2.961 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.291 1.291 24 C 0.149 3.851 25 C 0.066 3.934 26 N -0.274 5.274 27 N -0.328 5.328 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.173 0.827 32 H 0.192 0.808 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.268 0.732 40 H 0.030 0.970 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 10.310 12.478 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 C -0.255 4.255 4 C 0.021 3.979 5 N -0.161 5.161 6 C 0.083 3.917 7 N -0.213 5.213 8 C -0.029 4.029 9 C 0.392 3.608 10 O -0.397 6.397 11 N -0.286 5.286 12 C 0.011 3.989 13 C -0.212 4.212 14 C 0.036 3.964 15 N -0.319 5.319 16 C -0.490 4.490 17 H 0.072 0.928 18 C -0.216 4.216 19 N -0.536 5.536 20 Si 0.869 3.131 21 H -0.212 1.212 22 H -0.227 1.227 23 H -0.218 1.218 24 C 0.023 3.977 25 C -0.059 4.059 26 N -0.108 5.108 27 N -0.110 5.110 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.191 0.809 32 H 0.208 0.792 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.134 0.866 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.083 10.296 11.367 17.824 hybrid contribution -0.428 -0.868 0.731 1.213 sum -9.511 9.428 12.098 18.048 Atomic orbital electron populations 1.21071 0.86410 1.05686 1.04818 1.20918 0.96685 0.82068 0.91967 1.21797 0.95803 0.97775 1.10161 1.23614 0.91678 0.95870 0.86725 1.68084 1.36144 0.95029 1.16871 1.23086 0.78183 0.94010 0.96429 1.71199 1.26872 0.95911 1.27330 1.24247 0.85763 0.96855 0.96023 1.16324 0.84433 0.81917 0.78094 1.90776 1.34025 1.64853 1.50073 1.47173 1.05397 1.07395 1.68592 1.20715 1.02115 0.77658 0.98388 1.21859 1.03001 0.98620 0.97723 1.20251 0.92268 0.87920 0.95993 1.43834 1.81403 0.99382 1.07281 1.19800 1.38491 1.03544 0.87141 0.92827 1.25446 0.98598 0.96575 1.00996 1.70783 1.06007 1.43525 1.33289 0.83909 0.76486 0.76446 0.76216 1.21190 1.22689 1.21841 1.22017 0.97182 0.90055 0.88404 1.22695 0.84929 0.97647 1.00640 1.78826 1.19346 0.82875 1.29743 1.49096 1.09252 1.06290 1.46313 0.88625 0.88412 0.89032 0.80947 0.79173 0.90145 0.91349 0.91026 0.92278 0.93584 0.95016 0.92102 0.95201 0.90522 0.86579 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.13 36.00 0.36 -0.52 16 2 C 0.20 2.16 6.86 -81.58 -0.56 1.60 16 3 C -0.23 -1.66 9.72 -39.77 -0.39 -2.05 16 4 C 0.21 1.87 11.27 -17.07 -0.19 1.68 16 5 N -0.45 -6.76 10.48 -13.79 -0.14 -6.91 16 6 C 0.44 8.01 8.99 -323.05 -2.90 5.11 16 7 N -0.48 -9.89 6.79 -12.23 -0.08 -9.97 16 8 C 0.25 5.38 7.64 -156.78 -1.20 4.18 16 9 C 0.61 13.37 7.69 -12.20 -0.09 13.28 16 10 O -0.52 -12.28 16.54 5.35 0.09 -12.19 16 11 N -0.56 -11.17 2.46 -177.44 -0.44 -11.61 16 12 C 0.13 2.31 5.67 -5.91 -0.03 2.28 16 13 C -0.17 -3.25 5.64 -29.13 -0.16 -3.42 16 14 C 0.16 3.50 5.63 -5.23 -0.03 3.47 16 15 N -0.60 -15.27 2.43 -171.78 -0.42 -15.69 16 16 C -0.36 -10.50 9.06 -15.06 -0.14 -10.64 16 17 H 0.05 1.60 8.03 -52.49 -0.42 1.18 16 18 C -0.01 -0.37 4.35 -17.43 -0.08 -0.44 16 19 N -0.90 -27.61 12.62 55.49 0.70 -26.91 16 20 Si 1.04 27.18 30.04 -169.99 -5.11 22.07 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 22 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C 0.15 3.64 5.06 -1.56 -0.01 3.63 16 25 C 0.07 1.31 4.83 -4.40 -0.02 1.29 16 26 N -0.27 -5.35 12.68 32.02 0.41 -4.94 16 27 N -0.33 -5.33 3.91 -10.07 -0.04 -5.37 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 34 H 0.07 0.99 8.05 -51.93 -0.42 0.58 16 35 H 0.07 1.63 7.91 -51.93 -0.41 1.22 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 38 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 39 H 0.27 8.29 7.04 -40.82 -0.29 8.01 16 40 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 41 H 0.08 2.15 6.17 -51.93 -0.32 1.83 16 42 H 0.12 2.31 4.74 -52.32 -0.25 2.07 16 43 H 0.06 1.02 7.73 -51.93 -0.40 0.62 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -38.56 350.29 -10.59 -49.15 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.41 Total: -2.37 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: -5.44 Total: 19.46 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -0.01 Total: -81.39 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -5.11 Total: 22.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.56 -10.59 -49.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989603339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.701 kcal (2) G-P(sol) polarization free energy of solvation -38.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds