Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.69798 * 2 1 4 4 C 1.53190 * 109.58771 * 120.34720 * 2 1 3 5 5 H 1.09008 * 109.52523 * 54.45943 * 4 2 1 6 6 N 1.46505 * 109.50309 * 294.37598 * 4 2 1 7 7 C 1.34768 * 120.00131 * 155.15593 * 6 4 2 8 8 O 1.21569 * 120.00210 * 0.02562 * 7 6 4 9 9 C 1.47723 * 120.00088 * 180.02562 * 7 6 4 10 10 C 1.40122 * 120.35041 * 0.02562 * 9 7 6 11 11 N 1.31256 * 121.15170 * 180.25485 * 10 9 7 12 12 C 1.32714 * 121.80039 * 359.43440 * 11 10 9 13 13 N 1.37116 * 133.40667 * 180.24570 * 12 11 10 14 14 H 0.97000 * 126.59378 * 0.25294 * 13 12 11 15 15 N 1.40193 * 106.81732 * 180.28426 * 13 12 11 16 16 N 1.28665 * 109.51545 * 359.97438 * 15 13 12 17 17 C 1.35334 * 109.99656 * 359.97438 * 16 15 13 18 18 C 1.39429 * 120.35566 * 179.97438 * 9 7 6 19 19 C 1.53043 * 109.31670 * 174.42285 * 4 2 1 20 20 C 1.53043 * 109.53866 * 298.64276 * 19 4 2 21 21 C 1.53191 * 109.31623 * 61.35853 * 20 19 4 22 22 N 1.46925 * 108.77474 * 305.36826 * 21 20 19 23 23 C 1.36937 * 120.63256 * 233.61119 * 22 21 20 24 24 H 1.07998 * 120.00315 * 150.16087 * 23 22 21 25 25 C 1.38817 * 119.99780 * 330.15398 * 23 22 21 26 26 N 1.31619 * 119.99699 * 344.50641 * 25 23 22 27 27 Si 1.86797 * 119.99943 * 164.50152 * 25 23 22 28 28 H 1.48492 * 109.47349 * 60.00217 * 27 25 23 29 29 H 1.48501 * 109.46863 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47088 * 300.00023 * 27 25 23 31 31 H 1.09001 * 109.47058 * 299.64416 * 1 2 3 32 32 H 1.08994 * 109.47009 * 59.65413 * 1 2 3 33 33 H 1.09006 * 109.46675 * 179.65272 * 1 2 3 34 34 H 0.97003 * 119.99239 * 335.16602 * 6 4 2 35 35 H 1.08002 * 119.41983 * 359.97438 * 10 9 7 36 36 H 1.08002 * 120.94696 * 0.03888 * 18 9 7 37 37 H 1.09004 * 109.45817 * 58.65570 * 19 4 2 38 38 H 1.08999 * 109.46342 * 178.61244 * 19 4 2 39 39 H 1.08999 * 109.49692 * 181.31353 * 20 19 4 40 40 H 1.09007 * 109.49356 * 301.40807 * 20 19 4 41 41 H 1.08997 * 109.58270 * 65.15172 * 21 20 19 42 42 H 1.08996 * 109.58556 * 185.58200 * 21 20 19 43 43 H 0.97005 * 119.99539 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7292 1.2455 5 1 1.6031 -1.7252 1.2921 6 7 1.6706 0.0270 2.4436 7 6 1.5504 -0.6039 3.6284 8 8 1.7519 -1.8005 3.7031 9 6 1.1737 0.1584 4.8363 10 6 0.9392 1.5377 4.7586 11 7 0.6086 2.2313 5.8227 12 6 0.4705 1.6619 7.0135 13 7 0.1373 2.1412 8.2542 14 1 -0.0739 3.0603 8.4815 15 7 0.1615 1.0479 9.1314 16 7 0.4824 -0.0162 8.4832 17 6 0.6866 0.2805 7.1787 18 6 1.0468 -0.4869 6.0657 19 6 3.5676 -0.8478 1.1703 20 6 3.9570 -1.6656 -0.0633 21 6 3.4652 -0.9470 -1.3236 22 7 2.0227 -0.6996 -1.1944 23 6 1.1538 -1.1133 -2.1686 24 1 0.1399 -1.3805 -1.9099 25 6 1.5762 -1.1891 -3.4888 26 7 2.6869 -0.5882 -3.8598 27 14 0.5685 -2.1440 -4.7385 28 1 -0.7921 -1.5562 -4.8304 29 1 1.2298 -2.0726 -6.0662 30 1 0.4669 -3.5630 -4.3123 31 1 -0.3633 0.5083 0.8932 32 1 -0.3633 0.5192 -0.8868 33 1 -0.3633 -1.0277 -0.0062 34 1 1.5100 0.9818 2.3839 35 1 1.0366 2.0396 3.8072 36 1 1.2211 -1.5489 6.1561 37 1 4.0062 0.1476 1.0994 38 1 3.9379 -1.3445 2.0671 39 1 5.0413 -1.7694 -0.1034 40 1 3.4984 -2.6528 -0.0050 41 1 3.9904 0.0020 -1.4316 42 1 3.6520 -1.5719 -2.1969 43 1 2.9822 -0.6415 -4.7822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993424233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = 112.432019 kcal Electronic energy + Delta-G solvation = -27858.380027 eV Core-core repulsion = 23941.436082 eV Total energy + Delta-G solvation = -3916.943946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81071 -40.27774 -38.74763 -37.59502 -34.55305 -34.39276 -32.71620 -32.13237 -31.86417 -31.02103 -29.15977 -26.42859 -25.33132 -25.06910 -24.60499 -23.12995 -22.23830 -20.81164 -20.73449 -19.63171 -19.13581 -18.61079 -17.29865 -16.85774 -16.56145 -16.36163 -15.60602 -15.03293 -14.85237 -14.51359 -14.03884 -13.83175 -13.74695 -13.70553 -13.48572 -13.31135 -12.99166 -12.83263 -12.61017 -12.40226 -11.97071 -11.76369 -11.58620 -11.17031 -10.95287 -10.79312 -10.64459 -10.48364 -10.35924 -10.17175 -10.09065 -9.93811 -9.80335 -9.69727 -9.51946 -9.42280 -8.80031 -8.49191 -6.71345 -5.83470 -3.28420 -0.25336 0.20972 1.53613 1.60868 2.55401 2.95135 3.35829 3.36194 3.42024 3.42257 3.44670 3.78127 3.81913 4.17835 4.25539 4.45825 4.63172 4.85848 5.23066 5.25806 5.31590 5.40400 5.46109 5.53434 5.66441 5.72781 5.90802 6.00616 6.15128 6.18474 6.26981 6.34286 6.46620 6.52713 6.63835 6.70406 6.78528 6.93116 6.99082 7.00357 7.29524 7.35528 7.52728 7.62671 7.78062 8.17057 8.40968 9.16073 9.78553 10.34717 11.25204 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.002476 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.816280 B =11307.641702 C =11577.199172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.029 0.971 4 C 0.130 3.870 5 H 0.090 0.910 6 N -0.710 5.710 7 C 0.566 3.434 8 O -0.530 6.530 9 C -0.201 4.201 10 C 0.215 3.785 11 N -0.488 5.488 12 C 0.293 3.707 13 N -0.484 5.484 14 H 0.454 0.546 15 N 0.017 4.983 16 N -0.191 5.191 17 C -0.074 4.074 18 C 0.082 3.918 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.581 5.581 23 C -0.255 4.255 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.901 5.901 27 Si 0.902 3.098 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.395 0.605 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.087 0.913 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 6.750 19.073 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.059 3.941 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.108 0.892 6 N -0.360 5.360 7 C 0.350 3.650 8 O -0.407 6.407 9 C -0.210 4.210 10 C 0.041 3.959 11 N -0.202 5.202 12 C 0.048 3.952 13 N -0.209 5.209 14 H 0.302 0.698 15 N 0.034 4.966 16 N -0.072 5.072 17 C -0.200 4.200 18 C 0.051 3.949 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.044 3.956 22 N -0.304 5.304 23 C -0.384 4.384 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.545 5.545 27 Si 0.732 3.268 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.197 0.803 36 H 0.185 0.815 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.105 0.895 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.547 6.279 20.381 21.478 hybrid contribution -0.362 0.243 -1.408 1.474 sum -2.909 6.523 18.973 20.273 Atomic orbital electron populations 1.21833 0.95588 1.01836 1.00272 1.20568 0.93276 0.93598 0.86615 0.95360 1.21911 0.95338 0.96961 0.83298 0.89205 1.46058 1.69498 1.12197 1.08211 1.17654 0.77826 0.86944 0.82551 1.90820 1.50341 1.14214 1.85340 1.20915 1.09215 0.95475 0.95407 1.23140 0.87242 0.89737 0.95766 1.66700 1.18006 1.39312 0.96199 1.19601 0.96755 0.90692 0.88180 1.47538 1.56619 1.12679 1.04059 0.69769 1.81746 1.14577 0.87407 1.12852 1.74907 1.09964 1.19047 1.03279 1.20412 1.12660 0.93457 0.93440 1.21111 0.85271 1.01212 0.87258 1.21772 0.95131 1.00211 0.98497 1.22188 0.99312 0.99739 0.96788 1.20835 0.83088 0.97210 0.94468 1.44015 1.03140 1.65053 1.18207 1.19104 0.95214 1.38098 0.85985 0.91241 1.25086 0.97867 0.99362 0.96991 1.70015 1.24062 1.43544 1.16891 0.86385 0.79577 0.80298 0.80583 1.20868 1.21664 1.20948 0.94302 0.91673 0.92572 0.77028 0.80250 0.81528 0.92629 0.93041 0.92936 0.92442 0.96212 0.89474 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.84 37.16 0.29 -2.04 16 2 C 0.17 3.07 3.03 -67.60 -0.20 2.86 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.13 2.10 1.99 -67.81 -0.14 1.97 16 5 H 0.09 1.70 7.58 -51.92 -0.39 1.31 16 6 N -0.71 -8.63 4.53 -54.67 -0.25 -8.88 16 7 C 0.57 7.23 7.74 -12.39 -0.10 7.14 16 8 O -0.53 -8.81 16.06 5.30 0.09 -8.72 16 9 C -0.20 -2.02 5.88 -104.87 -0.62 -2.63 16 10 C 0.21 1.76 10.69 -17.09 -0.18 1.58 16 11 N -0.49 -4.53 10.37 -12.03 -0.12 -4.66 16 12 C 0.29 2.86 8.49 -155.93 -1.32 1.54 16 13 N -0.48 -3.82 7.53 31.15 0.23 -3.59 16 14 H 0.45 1.95 8.96 -182.53 -1.64 0.32 16 15 N 0.02 0.17 13.82 60.35 0.83 1.01 16 16 N -0.19 -2.17 12.40 32.17 0.40 -1.77 16 17 C -0.07 -0.80 7.27 -84.73 -0.62 -1.42 16 18 C 0.08 0.85 9.75 -38.52 -0.38 0.47 16 19 C -0.12 -1.92 5.46 -26.69 -0.15 -2.07 16 20 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 21 C 0.17 3.80 5.28 -3.71 -0.02 3.79 16 22 N -0.58 -13.37 2.99 -164.78 -0.49 -13.86 16 23 C -0.25 -6.49 8.58 -15.06 -0.13 -6.62 16 24 H 0.07 1.73 6.23 -52.49 -0.33 1.41 16 25 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 26 N -0.90 -25.00 11.23 55.49 0.62 -24.38 16 27 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.04 0.52 7.78 -51.93 -0.40 0.11 16 32 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 33 H 0.06 1.01 7.40 -51.93 -0.38 0.63 16 34 H 0.39 3.56 6.64 -40.82 -0.27 3.29 16 35 H 0.18 0.92 6.39 -52.49 -0.34 0.58 16 36 H 0.17 1.64 7.71 -52.49 -0.40 1.24 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 2.22 6.15 -51.93 -0.32 1.90 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -31.41 352.53 -8.75 -40.16 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.54 Total: 1.57 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -3.80 Total: 1.88 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 1.23 Total: -56.13 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.41 -8.75 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993424233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.591 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds