Wall clock time and date at job start Tue Mar 31 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00312 * 2 1 4 4 H 1.48499 * 109.47423 * 270.00130 * 3 2 1 5 5 H 1.48503 * 109.47042 * 30.00145 * 3 2 1 6 6 H 1.48501 * 109.47093 * 149.99958 * 3 2 1 7 7 C 1.38822 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99947 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99550 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99564 * 180.02562 * 9 7 2 11 11 C 1.53050 * 109.45973 * 154.99890 * 10 9 7 12 12 C 1.53192 * 109.31241 * 181.38674 * 11 10 9 13 13 N 1.46924 * 108.77339 * 305.36268 * 12 11 10 14 14 C 1.34772 * 120.63318 * 233.58496 * 13 12 11 15 15 O 1.21281 * 120.00612 * 185.20191 * 14 13 12 16 16 C 1.50711 * 119.99717 * 5.20706 * 14 13 12 17 17 H 1.08997 * 109.63127 * 35.68774 * 16 14 13 18 18 C 1.53309 * 109.80087 * 156.19529 * 16 14 13 19 19 C 1.52814 * 108.50823 * 189.59630 * 18 16 14 20 20 C 1.50441 * 110.44694 * 308.96402 * 19 18 16 21 21 N 1.32898 * 118.53741 * 197.76433 * 20 19 18 22 22 C 1.31597 * 121.06485 * 180.61162 * 21 20 19 23 23 N 1.31812 * 121.67005 * 359.42470 * 22 21 20 24 24 C 1.32191 * 120.64118 * 0.16398 * 23 22 21 25 25 C 1.37768 * 122.58198 * 17.67094 * 20 19 18 26 26 C 1.50338 * 122.80418 * 359.44931 * 25 20 19 27 27 C 1.46929 * 118.73849 * 53.86297 * 13 12 11 28 28 C 1.53040 * 109.45892 * 275.06398 * 10 9 7 29 29 H 0.97003 * 120.00280 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00238 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.45180 * 35.03320 * 10 9 7 32 32 H 1.08995 * 109.49439 * 61.43280 * 11 10 9 33 33 H 1.08999 * 109.51852 * 301.35434 * 11 10 9 34 34 H 1.08997 * 109.58487 * 185.57988 * 12 11 10 35 35 H 1.09004 * 109.70437 * 65.22106 * 12 11 10 36 36 H 1.08997 * 109.63277 * 309.30321 * 18 16 14 37 37 H 1.08995 * 109.63178 * 69.88751 * 18 16 14 38 38 H 1.09000 * 109.30784 * 69.27008 * 19 18 16 39 39 H 1.09001 * 109.30165 * 188.66667 * 19 18 16 40 40 H 1.08003 * 119.16630 * 179.70926 * 22 21 20 41 41 H 1.08004 * 120.36242 * 180.10857 * 24 23 22 42 42 H 1.08996 * 109.31118 * 137.79433 * 26 25 20 43 43 H 1.09001 * 109.31037 * 257.20416 * 26 25 20 44 44 H 1.09005 * 109.58665 * 65.92512 * 27 13 12 45 45 H 1.08999 * 109.58754 * 186.34834 * 27 13 12 46 46 H 1.08999 * 109.49940 * 298.56780 * 28 10 9 47 47 H 1.08997 * 109.49650 * 58.67197 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 6 5.4998 -2.2580 -0.6103 12 6 6.2497 -3.5935 -0.6416 13 7 6.2662 -4.1584 0.7146 14 6 7.4281 -4.5207 1.2935 15 8 7.4215 -5.0722 2.3737 16 6 8.7357 -4.2404 0.5986 17 1 8.6716 -3.2914 0.0664 18 6 9.8687 -4.1774 1.6296 19 6 11.1276 -3.6589 0.9358 20 6 11.3996 -4.4465 -0.3168 21 7 12.6148 -4.3888 -0.8517 22 6 12.9038 -5.0482 -1.9533 23 7 12.0099 -5.7993 -2.5650 24 6 10.7827 -5.9109 -2.0864 25 6 10.4401 -5.2242 -0.9272 26 6 9.0428 -5.3643 -0.3905 27 6 4.9913 -4.3266 1.4254 28 6 4.2560 -2.9778 1.4357 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3622 0.0004 31 1 3.5648 -3.2055 -0.5922 32 1 6.0565 -1.5422 -0.0055 33 1 5.3970 -1.8745 -1.6254 34 1 7.2723 -3.4304 -0.9819 35 1 5.7448 -4.2827 -1.3185 36 1 9.5910 -3.5010 2.4379 37 1 10.0552 -5.1738 2.0301 38 1 10.9908 -2.6086 0.6786 39 1 11.9769 -3.7535 1.6125 40 1 13.9000 -4.9757 -2.3641 41 1 10.0543 -6.5290 -2.5903 42 1 8.3333 -5.3209 -1.2168 43 1 8.9452 -6.3254 0.1144 44 1 4.3837 -5.0733 0.9141 45 1 5.1834 -4.6475 2.4492 46 1 4.8245 -2.2552 2.0211 47 1 3.2676 -3.1071 1.8766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996662841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:54 Heat of formation + Delta-G solvation = 17.046267 kcal Electronic energy + Delta-G solvation = -28318.633290 eV Core-core repulsion = 24501.093452 eV Total energy + Delta-G solvation = -3817.539839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80444 -40.38079 -37.91636 -36.82517 -34.75546 -34.43232 -32.18992 -31.87883 -31.29917 -30.42460 -29.69965 -25.98125 -25.11383 -24.48099 -23.44133 -23.03789 -22.42121 -21.16555 -19.99459 -19.07187 -18.09764 -17.70128 -17.42063 -17.04362 -16.17092 -15.45177 -15.41798 -14.91501 -14.78388 -14.43408 -14.35810 -14.19450 -14.15361 -13.86929 -13.59040 -13.39557 -13.28889 -12.94262 -12.59197 -12.54376 -12.34752 -12.23764 -11.81792 -11.50540 -11.34059 -11.24728 -11.07445 -11.06327 -10.95067 -10.75920 -10.58539 -10.33855 -10.05411 -9.71627 -9.64911 -9.61395 -9.55951 -8.98917 -8.64295 -7.34772 -5.83124 -3.19411 0.49728 0.65059 2.48370 2.90577 3.32308 3.34586 3.34802 3.40868 3.59780 3.80751 3.97590 4.10984 4.19652 4.30655 4.52211 4.53159 4.68094 4.83302 4.88065 4.93560 4.95582 5.01065 5.11628 5.15760 5.20699 5.26168 5.34979 5.41612 5.45907 5.49043 5.59834 5.65268 5.68277 5.73328 5.81183 5.84882 6.03007 6.04065 6.04856 6.15766 6.38177 6.42301 6.58899 6.76181 6.87867 7.36331 7.69700 7.92114 8.08618 8.35726 9.13657 9.86279 10.05489 11.35030 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002575 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.636120 B =10869.850433 C =11311.450703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.184 3.816 11 C -0.145 4.145 12 C 0.108 3.892 13 N -0.605 5.605 14 C 0.521 3.479 15 O -0.543 6.543 16 C -0.111 4.111 17 H 0.100 0.900 18 C -0.099 4.099 19 C -0.074 4.074 20 C 0.183 3.817 21 N -0.521 5.521 22 C 0.289 3.711 23 N -0.522 5.522 24 C 0.152 3.848 25 C -0.177 4.177 26 C -0.062 4.062 27 C 0.112 3.888 28 C -0.150 4.150 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.195 0.805 41 H 0.169 0.831 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.147 -11.241 -2.558 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.184 4.184 12 C -0.015 4.015 13 N -0.337 5.337 14 C 0.308 3.692 15 O -0.420 6.420 16 C -0.132 4.132 17 H 0.118 0.882 18 C -0.137 4.137 19 C -0.112 4.112 20 C 0.038 3.962 21 N -0.235 5.235 22 C 0.001 3.999 23 N -0.236 5.236 24 C -0.015 4.015 25 C -0.182 4.182 26 C -0.101 4.101 27 C -0.010 4.010 28 C -0.191 4.191 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.212 0.788 41 H 0.186 0.814 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.797 -11.512 -2.374 27.442 hybrid contribution -0.331 1.303 0.166 1.354 sum 24.466 -10.210 -2.208 26.603 Atomic orbital electron populations 1.69697 1.05117 1.25891 1.57293 1.24684 0.95226 0.97238 1.01932 0.86554 0.79191 0.85022 0.77735 1.21089 1.21754 1.20392 1.19056 0.80510 0.94693 1.43258 0.89168 1.42790 1.04042 1.01924 1.90263 1.20138 0.89975 0.89430 0.93044 1.22265 0.97646 0.96187 1.02305 1.21841 1.01240 0.95521 0.82945 1.48207 1.06782 1.61912 1.16828 1.20349 0.84931 0.78334 0.85570 1.90690 1.87191 1.42349 1.21786 1.21390 0.93426 1.00703 0.97668 0.88221 1.21428 0.91755 1.03483 0.97033 1.20486 0.99322 0.99093 0.92290 1.21380 0.87950 0.91844 0.94977 1.68410 1.20361 1.22280 1.12456 1.24916 0.99230 0.88009 0.87727 1.68430 1.02742 1.18947 1.33455 1.23305 0.93257 0.93685 0.91240 1.21088 0.98235 1.00608 0.98223 1.20272 0.91863 0.99318 0.98606 1.21816 0.82988 0.98384 0.97859 1.22710 1.00553 0.94904 1.00901 0.93009 0.80679 0.92483 0.91819 0.90353 0.90021 0.90812 0.89732 0.90252 0.88824 0.88595 0.78799 0.81354 0.89298 0.89090 0.91520 0.89545 0.92380 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.51 27.74 -169.99 -4.71 16.80 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.60 10.41 -15.06 -0.16 -6.76 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -16.55 4.93 -53.38 -0.26 -16.82 16 10 C 0.18 3.14 2.73 -67.88 -0.19 2.95 16 11 C -0.15 -1.88 5.55 -26.61 -0.15 -2.03 16 12 C 0.11 1.06 5.92 -3.71 -0.02 1.04 16 13 N -0.60 -7.07 2.97 -172.49 -0.51 -7.59 16 14 C 0.52 6.14 6.80 -10.98 -0.07 6.07 16 15 O -0.54 -8.29 15.70 5.56 0.09 -8.20 16 16 C -0.11 -0.92 1.66 -91.69 -0.15 -1.07 16 17 H 0.10 0.74 6.51 -51.93 -0.34 0.40 16 18 C -0.10 -0.80 4.68 -26.67 -0.12 -0.93 16 19 C -0.07 -0.54 5.95 -28.10 -0.17 -0.71 16 20 C 0.18 1.60 6.62 -82.43 -0.55 1.05 16 21 N -0.52 -4.99 10.32 -11.00 -0.11 -5.11 16 22 C 0.29 2.48 12.29 -92.31 -1.13 1.34 16 23 N -0.52 -4.78 10.44 -14.54 -0.15 -4.93 16 24 C 0.15 1.17 10.94 -17.11 -0.19 0.98 16 25 C -0.18 -1.38 5.73 -104.68 -0.60 -1.98 16 26 C -0.06 -0.43 4.87 -28.15 -0.14 -0.57 16 27 C 0.11 1.50 6.45 -3.48 -0.02 1.48 16 28 C -0.15 -2.41 5.67 -26.39 -0.15 -2.56 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.36 7.92 5.66 -40.82 -0.23 7.69 16 31 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.60 4.98 -51.93 -0.26 0.34 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.20 1.07 8.06 -52.48 -0.42 0.64 16 41 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 42 H 0.09 0.49 7.26 -51.93 -0.38 0.11 16 43 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.23 7.04 -51.93 -0.37 0.87 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -33.79 370.02 -10.29 -44.08 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.07 Total: 5.68 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.90 Total: -1.64 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.26 Total: -62.29 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.79 -10.29 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996662841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.126 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds