Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48503 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47063 * 60.00135 * 3 2 1 6 6 H 1.48498 * 109.47083 * 299.99854 * 3 2 1 7 7 C 1.38818 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99931 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00260 * 179.97438 * 9 7 2 11 11 H 1.09009 * 109.49440 * 325.00690 * 10 9 7 12 12 C 1.53043 * 109.49542 * 85.06670 * 10 9 7 13 13 C 1.53043 * 109.53575 * 181.32127 * 12 10 9 14 14 C 1.53191 * 109.30905 * 298.63245 * 13 12 10 15 15 N 1.46927 * 108.77653 * 54.63992 * 14 13 12 16 16 C 1.34773 * 120.62835 * 126.38587 * 15 14 13 17 17 O 1.21282 * 120.00317 * 355.58275 * 16 15 14 18 18 C 1.50705 * 119.99722 * 175.58377 * 16 15 14 19 19 H 1.08995 * 109.63140 * 37.63349 * 18 16 15 20 20 C 1.53314 * 109.63570 * 158.03400 * 18 16 15 21 21 C 1.52808 * 108.51760 * 189.48033 * 20 18 16 22 22 C 1.50437 * 110.45486 * 308.96871 * 21 20 18 23 23 N 1.32885 * 118.54142 * 197.67426 * 22 21 20 24 24 C 1.31607 * 121.06811 * 180.22576 * 23 22 21 25 25 N 1.31815 * 121.66549 * 0.03209 * 24 23 22 26 26 C 1.32191 * 120.64566 * 359.87740 * 25 24 23 27 27 C 1.37777 * 122.57704 * 17.71739 * 22 21 20 28 28 C 1.50339 * 122.80272 * 359.35657 * 27 22 21 29 29 C 1.46932 * 118.76256 * 306.40929 * 15 14 13 30 30 H 0.97003 * 119.99652 * 180.02562 * 1 2 3 31 31 H 0.97004 * 119.99702 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.45735 * 301.33685 * 12 10 9 33 33 H 1.08996 * 109.45873 * 61.29829 * 12 10 9 34 34 H 1.08995 * 109.49884 * 58.58545 * 13 12 10 35 35 H 1.09004 * 109.49082 * 178.68665 * 13 12 10 36 36 H 1.09000 * 109.58471 * 174.42514 * 14 13 12 37 37 H 1.08994 * 109.58950 * 294.70622 * 14 13 12 38 38 H 1.08998 * 109.62922 * 309.19141 * 20 18 16 39 39 H 1.08998 * 109.62902 * 69.77027 * 20 18 16 40 40 H 1.09003 * 109.30697 * 69.27113 * 21 20 18 41 41 H 1.09000 * 109.30280 * 188.66449 * 21 20 18 42 42 H 1.07993 * 119.16410 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.36297 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.30014 * 257.28570 * 28 27 22 45 45 H 1.08996 * 109.31624 * 137.87909 * 28 27 22 46 46 H 1.08998 * 109.56343 * 293.78463 * 29 15 14 47 47 H 1.09009 * 109.61286 * 173.35657 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9686 -3.5513 -0.5885 12 6 2.4220 -4.0365 1.4388 13 6 3.2158 -5.3450 1.4371 14 6 2.3498 -6.4620 0.8465 15 7 1.8758 -6.0421 -0.4794 16 6 2.0765 -6.8230 -1.5593 17 8 2.7224 -7.8445 -1.4575 18 6 1.4984 -6.4268 -2.8935 19 1 1.5618 -5.3453 -3.0135 20 6 2.2789 -7.1166 -4.0185 21 6 1.8340 -6.5211 -5.3536 22 6 0.3339 -6.5408 -5.4643 23 7 -0.2160 -6.4026 -6.6661 24 6 -1.5230 -6.4081 -6.8197 25 7 -2.3396 -6.5496 -5.7947 26 6 -1.8645 -6.6939 -4.5696 27 6 -0.4888 -6.6955 -4.3699 28 6 0.0385 -6.8720 -2.9731 29 6 1.1794 -4.7546 -0.6061 30 1 -0.4850 -0.8401 0.0004 31 1 0.3556 -2.3881 0.0016 32 1 3.0273 -3.2452 1.8812 33 1 1.5104 -4.1655 2.0222 34 1 4.1152 -5.2241 0.8335 35 1 3.4947 -5.6025 2.4590 36 1 2.9422 -7.3721 0.7514 37 1 1.4973 -6.6476 1.4997 38 1 3.3468 -6.9480 -3.8800 39 1 2.0697 -8.1862 -4.0068 40 1 2.1871 -5.4923 -5.4249 41 1 2.2633 -7.1035 -6.1688 42 1 -1.9370 -6.2938 -7.8106 43 1 -2.5377 -6.8099 -3.7331 44 1 -0.0339 -7.9223 -2.6907 45 1 -0.5586 -6.2745 -2.2842 46 1 0.2297 -4.7993 -0.0730 47 1 0.9998 -4.5378 -1.6592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999350437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = 13.146145 kcal Electronic energy + Delta-G solvation = -28765.460003 eV Core-core repulsion = 24947.751042 eV Total energy + Delta-G solvation = -3817.708961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63671 -40.31513 -37.84851 -36.72102 -34.65507 -34.31198 -32.65188 -31.75617 -31.43374 -30.34931 -28.12177 -26.03719 -25.09596 -24.23250 -23.67357 -23.26489 -22.26982 -21.00019 -19.99449 -18.91803 -17.92762 -17.45668 -17.34302 -16.93346 -16.19885 -15.40682 -15.34211 -14.98251 -14.54283 -14.22540 -14.17668 -14.07356 -14.05631 -13.79475 -13.69855 -13.46916 -13.35405 -13.08041 -12.76535 -12.48727 -12.22160 -12.05500 -11.43441 -11.29418 -11.19861 -11.10208 -10.97028 -10.83608 -10.61247 -10.56118 -10.49198 -10.39990 -10.10254 -9.69958 -9.45129 -9.39945 -9.31255 -9.01015 -8.55464 -7.16990 -6.20245 -3.22270 0.67341 0.82653 2.54206 2.94522 3.46671 3.52017 3.52269 3.61709 3.76258 3.97675 4.12435 4.26620 4.35336 4.44610 4.58925 4.67705 4.85284 5.00036 5.04103 5.09195 5.13805 5.15316 5.19557 5.28245 5.29286 5.34594 5.46080 5.50051 5.52208 5.58034 5.63587 5.67705 5.76370 5.82493 5.85943 5.96839 5.98390 6.14785 6.20137 6.24120 6.27949 6.56684 6.68334 6.75980 6.85270 7.40064 7.72116 7.86734 8.13280 8.64868 9.09150 9.95605 10.08648 11.27762 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009910 B = 0.003717 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.882525 B = 7530.790569 C = 9377.668638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.041 4.041 3 Si 1.083 2.917 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.333 4.333 8 H 0.066 0.934 9 N -0.733 5.733 10 C 0.172 3.828 11 H 0.052 0.948 12 C -0.136 4.136 13 C -0.132 4.132 14 C 0.112 3.888 15 N -0.602 5.602 16 C 0.524 3.476 17 O -0.547 6.547 18 C -0.113 4.113 19 H 0.104 0.896 20 C -0.097 4.097 21 C -0.075 4.075 22 C 0.183 3.817 23 N -0.521 5.521 24 C 0.289 3.711 25 N -0.522 5.522 26 C 0.153 3.847 27 C -0.177 4.177 28 C -0.059 4.059 29 C 0.097 3.903 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.195 0.805 43 H 0.169 0.831 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 -16.375 -6.628 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.239 4.239 3 Si 0.914 3.086 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.464 4.464 8 H 0.084 0.916 9 N -0.376 5.376 10 C 0.062 3.938 11 H 0.070 0.930 12 C -0.177 4.177 13 C -0.171 4.171 14 C -0.011 4.011 15 N -0.335 5.335 16 C 0.312 3.688 17 O -0.425 6.425 18 C -0.134 4.134 19 H 0.122 0.878 20 C -0.135 4.135 21 C -0.112 4.112 22 C 0.039 3.961 23 N -0.235 5.235 24 C 0.001 3.999 25 N -0.236 5.236 26 C -0.014 4.014 27 C -0.181 4.181 28 C -0.098 4.098 29 C -0.027 4.027 30 H 0.067 0.933 31 H 0.200 0.800 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.212 0.788 43 H 0.186 0.814 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.674 -15.110 -7.517 16.890 hybrid contribution 0.042 -1.508 0.938 1.776 sum 0.716 -16.617 -6.579 17.887 Atomic orbital electron populations 1.70839 1.06072 1.28468 1.53333 1.25759 0.96999 1.00979 1.00143 0.83176 0.73612 0.75072 0.76709 1.22071 1.21938 1.21939 1.20060 0.92044 0.85458 1.48831 0.91605 1.42337 1.04752 1.00520 1.89960 1.20422 0.94436 0.85288 0.93686 0.92956 1.22252 0.99662 0.95583 1.00202 1.21921 0.98867 0.95718 1.00600 1.21616 0.98353 0.98372 0.82712 1.48118 1.57225 1.20197 1.07921 1.20377 0.79798 0.83334 0.85277 1.90666 1.40618 1.25839 1.85331 1.21422 0.95789 1.03018 0.93202 0.87796 1.21419 1.00465 1.00505 0.91141 1.20486 0.88155 1.03589 0.99007 1.21358 0.97247 0.89838 0.87648 1.68394 1.14853 1.14614 1.25656 1.24902 0.85274 0.91205 0.98520 1.68418 1.41118 1.13897 1.00134 1.23286 0.92759 0.90294 0.95054 1.21068 0.95686 1.03879 0.97437 1.20210 0.94163 1.03109 0.92313 1.22243 0.95835 0.82248 1.02361 0.93332 0.79996 0.91494 0.92626 0.91868 0.91322 0.89352 0.91676 0.89787 0.90391 0.88681 0.88643 0.78813 0.81402 0.89305 0.89301 0.91383 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.90 13.70 55.49 0.76 -27.14 16 2 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 3 Si 1.08 25.18 29.92 -169.99 -5.09 20.09 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.33 -8.83 9.93 -15.06 -0.15 -8.97 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.73 -16.77 5.12 -53.31 -0.27 -17.04 16 10 C 0.17 3.10 2.92 -67.81 -0.20 2.90 16 11 H 0.05 1.02 8.08 -51.92 -0.42 0.60 16 12 C -0.14 -2.24 5.47 -26.69 -0.15 -2.38 16 13 C -0.13 -1.74 6.08 -26.61 -0.16 -1.91 16 14 C 0.11 1.41 6.44 -3.71 -0.02 1.38 16 15 N -0.60 -7.97 2.97 -172.77 -0.51 -8.49 16 16 C 0.52 6.98 6.81 -10.98 -0.07 6.90 16 17 O -0.55 -8.68 15.65 5.56 0.09 -8.59 16 18 C -0.11 -1.23 1.71 -91.69 -0.16 -1.39 16 19 H 0.10 1.18 6.17 -51.93 -0.32 0.86 16 20 C -0.10 -0.97 4.64 -26.67 -0.12 -1.09 16 21 C -0.07 -0.71 5.96 -28.11 -0.17 -0.88 16 22 C 0.18 2.06 6.62 -82.43 -0.55 1.51 16 23 N -0.52 -6.21 10.32 -11.00 -0.11 -6.33 16 24 C 0.29 3.15 12.29 -92.30 -1.13 2.01 16 25 N -0.52 -6.05 10.44 -14.55 -0.15 -6.20 16 26 C 0.15 1.58 10.94 -17.11 -0.19 1.40 16 27 C -0.18 -1.85 5.73 -104.68 -0.60 -2.45 16 28 C -0.06 -0.57 5.01 -28.14 -0.14 -0.71 16 29 C 0.10 1.37 5.58 -3.71 -0.02 1.35 16 30 H 0.26 7.38 6.77 -40.82 -0.28 7.10 16 31 H 0.37 8.60 6.63 -40.82 -0.27 8.33 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 45 H 0.09 0.79 7.93 -51.93 -0.41 0.38 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.09 1.18 5.43 -51.92 -0.28 0.90 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -32.56 372.50 -10.65 -43.21 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.04 Total: 8.41 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.93 Total: -3.54 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -0.29 Total: -65.20 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.56 -10.65 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999350437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.355 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds