Wall clock time and date at job start Tue Mar 31 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40171 * 120.36726 * 2 1 4 4 N 1.31262 * 120.35762 * 180.02562 * 3 2 1 5 5 C 1.33984 * 120.88244 * 359.97438 * 4 3 2 6 6 N 1.32500 * 132.34485 * 180.35156 * 5 4 3 7 7 C 1.33470 * 109.75339 * 180.02562 * 6 5 4 8 8 C 1.48129 * 125.32525 * 179.85540 * 7 6 5 9 9 O 1.21520 * 120.00106 * 172.21464 * 8 7 6 10 10 N 1.34776 * 119.99753 * 352.21804 * 8 7 6 11 11 C 1.46932 * 120.63089 * 353.94443 * 10 8 7 12 12 C 1.53189 * 108.77909 * 126.41307 * 11 10 8 13 13 C 1.53046 * 109.31000 * 54.62965 * 12 11 10 14 14 C 1.53040 * 109.54171 * 298.63861 * 13 12 11 15 15 H 1.09001 * 109.49463 * 301.37906 * 14 13 12 16 16 N 1.46501 * 109.49610 * 181.32025 * 14 13 12 17 17 C 1.36933 * 119.99836 * 155.00349 * 16 14 13 18 18 H 1.08002 * 120.00152 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99801 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00056 * 359.72561 * 19 17 16 21 21 Si 1.86798 * 119.99989 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47255 * 59.99927 * 21 19 17 23 23 H 1.48505 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47280 * 300.00018 * 21 19 17 25 25 C 1.46928 * 120.63096 * 173.96390 * 10 8 7 26 26 N 1.31986 * 109.35094 * 359.59287 * 7 6 5 27 27 N 1.36873 * 120.22260 * 359.97438 * 5 4 3 28 28 C 1.35681 * 120.36351 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46946 * 89.99977 * 1 2 3 30 30 H 1.08994 * 109.47269 * 210.00221 * 1 2 3 31 31 H 1.09001 * 109.46786 * 330.00267 * 1 2 3 32 32 H 1.07995 * 119.81985 * 0.02562 * 3 2 1 33 33 H 1.08994 * 109.58582 * 6.62169 * 11 10 8 34 34 H 1.09000 * 109.58399 * 246.19968 * 11 10 8 35 35 H 1.09000 * 109.49827 * 294.68422 * 12 11 10 36 36 H 1.08994 * 109.49903 * 174.58198 * 12 11 10 37 37 H 1.09001 * 109.45527 * 178.61219 * 13 12 11 38 38 H 1.09000 * 109.44843 * 58.65598 * 13 12 11 39 39 H 0.96996 * 119.99749 * 334.99395 * 16 14 13 40 40 H 0.97007 * 120.00028 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.58249 * 113.79988 * 25 10 8 42 42 H 1.08996 * 109.58310 * 353.37470 * 25 10 8 43 43 H 1.08008 * 120.48351 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2092 -0.0005 5 6 4.2157 0.0592 -0.0005 6 7 5.5142 -0.2044 0.0050 7 6 5.7065 -1.5251 0.0016 8 6 7.0258 -2.1986 0.0028 9 8 7.0926 -3.4040 0.1419 10 7 8.1522 -1.4745 -0.1503 11 6 8.0835 -0.0380 -0.4512 12 6 8.9218 0.7227 0.5809 13 6 10.3416 0.1515 0.5999 14 6 10.2948 -1.3229 1.0074 15 1 9.8327 -1.4141 1.9904 16 7 11.6569 -1.8602 1.0558 17 6 11.9398 -2.9381 1.8516 18 1 11.1589 -3.3918 2.4440 19 6 13.2302 -3.4475 1.8971 20 7 14.1806 -2.8980 1.1711 21 14 13.6163 -4.9174 2.9832 22 1 12.7880 -6.0756 2.5617 23 1 15.0546 -5.2639 2.8544 24 1 13.3135 -4.5810 4.3976 25 6 9.4721 -2.1067 -0.0199 26 7 4.5372 -2.1373 0.0025 27 7 3.5541 -1.1390 0.0005 28 6 2.1928 -1.1707 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6787 2.1464 0.0004 33 1 7.0477 0.2971 -0.3992 34 1 8.4793 0.1454 -1.4501 35 1 8.4721 0.6121 1.5677 36 1 8.9580 1.7786 0.3133 37 1 10.9470 0.7073 1.3159 38 1 10.7816 0.2399 -0.3935 39 1 12.3582 -1.4526 0.5240 40 1 15.0825 -3.2538 1.2031 41 1 9.9810 -2.0919 -0.9836 42 1 9.3523 -3.1364 0.3168 43 1 1.6667 -2.1140 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999464846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:50 Heat of formation + Delta-G solvation = 111.583641 kcal Electronic energy + Delta-G solvation = -27688.826568 eV Core-core repulsion = 23771.845834 eV Total energy + Delta-G solvation = -3916.980734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.23513 -41.44621 -39.96242 -38.80230 -36.38021 -35.83250 -34.33901 -33.77972 -32.78772 -32.14788 -30.29522 -28.55159 -27.08466 -26.08614 -25.89626 -24.42113 -23.99123 -23.27485 -21.75730 -20.58648 -19.63222 -19.27353 -19.12011 -18.24562 -17.95953 -17.31152 -16.74590 -16.64271 -16.33453 -15.71812 -15.56332 -15.25664 -15.18421 -15.03848 -14.68187 -14.49056 -14.06937 -14.02540 -13.79889 -13.62536 -13.59300 -13.11223 -13.04524 -12.91351 -12.88970 -12.53199 -12.35892 -12.23604 -11.92910 -11.83581 -11.73069 -11.38117 -11.17678 -11.10964 -10.89172 -10.64628 -9.94543 -9.86906 -9.05885 -7.98851 -5.28634 -0.80301 -0.57301 0.47807 0.50322 1.43326 1.46069 1.48664 1.53512 1.82182 2.05533 2.23215 2.52673 2.73003 3.09102 3.33477 3.34041 3.71308 3.76698 3.88367 3.95727 4.05809 4.10903 4.22805 4.31963 4.35213 4.39937 4.55982 4.68400 4.74533 4.82049 4.82532 4.95085 4.96661 5.02753 5.06789 5.11722 5.19855 5.34324 5.42635 5.43834 5.47121 5.60666 6.04749 6.22515 6.22986 6.43902 6.75840 7.30055 8.00476 8.27678 9.23374 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.002516 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.192649 B =11127.911144 C =11847.679127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.147 4.147 3 C 0.227 3.773 4 N -0.472 5.472 5 C 0.422 3.578 6 N -0.511 5.511 7 C 0.237 3.763 8 C 0.596 3.404 9 O -0.555 6.555 10 N -0.571 5.571 11 C 0.058 3.942 12 C -0.111 4.111 13 C -0.118 4.118 14 C 0.169 3.831 15 H 0.034 0.966 16 N -0.726 5.726 17 C -0.249 4.249 18 H 0.066 0.934 19 C -0.067 4.067 20 N -0.962 5.962 21 Si 0.970 3.030 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.106 3.894 26 N -0.298 5.298 27 N -0.324 5.324 28 C 0.134 3.866 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.246 0.754 33 H 0.156 0.844 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.379 0.621 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.339 14.564 -5.122 38.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C 0.043 3.957 4 N -0.188 5.188 5 C 0.064 3.936 6 N -0.248 5.248 7 C -0.046 4.046 8 C 0.379 3.621 9 O -0.432 6.432 10 N -0.303 5.303 11 C -0.063 4.063 12 C -0.149 4.149 13 C -0.156 4.156 14 C 0.059 3.941 15 H 0.052 0.948 16 N -0.366 5.366 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.260 4.260 20 N -0.612 5.612 21 Si 0.798 3.202 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.019 4.019 26 N -0.133 5.133 27 N -0.104 5.104 28 C 0.000 4.000 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.261 0.739 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.212 0.788 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -34.258 13.870 -4.911 37.284 hybrid contribution 0.715 -1.836 0.357 2.003 sum -33.543 12.033 -4.554 35.926 Atomic orbital electron populations 1.20870 0.83299 1.06202 1.05171 1.21252 1.01355 0.90382 1.02394 1.24727 0.86630 1.01508 0.82831 1.68277 1.10899 1.20706 1.18877 1.23170 0.89430 0.83931 0.97106 1.70327 1.11562 1.12498 1.30388 1.23725 0.94158 0.88289 0.98456 1.16780 0.81800 0.85355 0.78195 1.90808 1.86268 1.14591 1.51497 1.48096 1.04283 1.11606 1.66297 1.23269 1.07500 0.76647 0.98891 1.21736 0.93318 1.00728 0.99134 1.21773 0.97975 0.93813 1.02049 1.20617 0.84988 0.93219 0.95300 0.94823 1.42475 1.05515 1.35763 1.52818 1.19494 0.94039 1.06254 1.18249 0.91613 1.25505 0.95938 1.02523 1.02037 1.69789 1.01588 1.44588 1.45226 0.85280 0.76567 0.79516 0.78810 1.20940 1.21457 1.20393 1.22523 0.80680 0.97810 1.00854 1.78791 0.95590 1.08783 1.30156 1.48992 1.08235 1.07612 1.45514 1.22941 0.77417 1.04374 0.95278 0.88253 0.89471 0.87320 0.73853 0.82817 0.90390 0.92549 0.87441 0.91584 0.91192 0.78809 0.93769 0.91146 0.92394 0.77310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.62 10.03 71.23 0.71 1.33 16 2 C -0.15 -0.37 5.87 -19.99 -0.12 -0.49 16 3 C 0.23 1.05 10.96 85.25 0.93 1.98 16 4 N -0.47 -8.02 10.48 -197.54 -2.07 -10.09 16 5 C 0.42 10.44 8.99 261.57 2.35 12.79 16 6 N -0.51 -15.59 7.56 -192.62 -1.46 -17.05 16 7 C 0.24 8.29 7.68 137.40 1.05 9.34 16 8 C 0.60 24.06 7.71 86.87 0.67 24.73 16 9 O -0.56 -26.40 16.52 -3.78 -0.06 -26.46 16 10 N -0.57 -21.26 2.97 -822.00 -2.44 -23.70 16 11 C 0.06 1.70 6.31 86.36 0.55 2.25 16 12 C -0.11 -3.08 6.08 30.67 0.19 -2.89 16 13 C -0.12 -4.00 5.35 30.62 0.16 -3.84 16 14 C 0.17 7.34 2.92 45.07 0.13 7.47 16 15 H 0.03 1.58 8.08 -2.39 -0.02 1.56 16 16 N -0.73 -38.43 5.12 -322.58 -1.65 -40.08 16 17 C -0.25 -14.64 9.93 84.03 0.83 -13.81 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 20 N -0.96 -59.99 13.06 21.65 0.28 -59.71 16 21 Si 0.97 48.48 29.55 68.60 2.03 50.51 16 22 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 25 C 0.11 4.52 6.00 86.36 0.52 5.04 16 26 N -0.30 -9.69 12.78 -52.60 -0.67 -10.36 16 27 N -0.32 -7.41 3.91 -197.57 -0.77 -8.19 16 28 C 0.13 1.37 10.97 83.43 0.92 2.29 16 29 H 0.10 -0.78 8.14 -2.39 -0.02 -0.79 16 30 H 0.09 -0.59 8.09 -2.39 -0.02 -0.60 16 31 H 0.11 -1.08 8.10 -2.39 -0.02 -1.10 16 32 H 0.25 -1.58 8.06 -2.91 -0.02 -1.61 16 33 H 0.16 4.53 3.67 -56.63 -0.21 4.32 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.38 20.91 7.80 -92.71 -0.72 20.18 16 40 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 41 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.06 2.85 7.04 -2.39 -0.02 2.83 16 43 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -87.29 359.61 2.69 -84.61 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.14 Total: 17.88 kcal Atomic # 6 Polarization: 33.27 SS G_CDS: 9.37 Total: 42.64 kcal Atomic # 7 Polarization: -160.40 SS G_CDS: -8.79 Total: -169.18 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.06 Total: -26.46 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -87.29 2.69 -84.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999464846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.191 kcal (2) G-P(sol) polarization free energy of solvation -87.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds